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Yali Dou, Ph.D. - Publications

Institution:
University of Rochester, Rochester, NY
Area:
the histone genes and tubulin genes of the ciliated protozoan Tetrahymena thermophila
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang D, Li H, Chandel NS, Dou Y, Yi R. MOF-mediated histone H4 Lysine 16 acetylation governs mitochondrial and ciliary functions by controlling gene promoters. Nature Communications. 14: 4404. PMID 37479688 DOI: 10.1038/s41467-023-40108-0  0.327
2022 Kalra P, Zahid H, Ayoub A, Dou Y, Pomerantz WCK. Alternative Mechanisms for DNA Engagement by BET Bromodomain-Containing Proteins. Biochemistry. PMID 35748495 DOI: 10.1021/acs.biochem.2c00157  0.3
2022 Dou Y. Rotational dynamics of the MLL complex on nucleosome and its implication in heterogeneity of the epigenetic landscape. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 35553474 DOI: 10.1096/fasebj.2022.36.S1.R4841  0.315
2021 Li Q, Huang Y, Xu J, Mao F, Zhou B, Sun L, Basinski BW, Aksu M, Liu J, Dou Y, Rao RC. p53 inactivation unmasks histone methylation-independent WDR5 functions that drive self-renewal and differentiation of pluripotent stem cells. Stem Cell Reports. PMID 34715053 DOI: 10.1016/j.stemcr.2021.10.002  0.3
2020 Healton SE, Pinto HD, Mishra LN, Hamilton GA, Wheat JC, Swist-Rosowska K, Shukeir N, Dou Y, Steidl U, Jenuwein T, Gamble MJ, Skoultchi AI. H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction. Proceedings of the National Academy of Sciences of the United States of America. PMID 32513732 DOI: 10.1073/Pnas.1920725117  0.403
2020 Sha L, Ayoub A, Cho US, Dou Y. Insights on the regulation of the MLL/SET1 family histone methyltransferases. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194561. PMID 32304759 DOI: 10.1016/j.bbagrm.2020.194561  0.303
2019 Park SH, Ayoub A, Lee YT, Xu J, Kim H, Zheng W, Zhang B, Sha L, An S, Zhang Y, Cianfrocco MA, Su M, Dou Y, Cho US. Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nature Communications. 10: 5540. PMID 31804488 DOI: 10.1038/S41467-019-13550-2  0.336
2019 Zhang Y, Jang Y, Lee JE, Ahn J, Xu L, Holden MR, Cornett EM, Krajewski K, Klein BJ, Wang SP, Dou Y, Roeder RG, Strahl BD, Rothbart SB, Shi X, et al. Selective binding of the PHD6 finger of MLL4 to histone H4K16ac links MLL4 and MOF. Nature Communications. 10: 2314. PMID 31127101 DOI: 10.1038/S41467-019-10324-8  0.305
2018 Liu Y, Dou Y. Re-SET for Transcription. Molecular Cell. 70: 985-986. PMID 29932907 DOI: 10.1016/j.molcel.2018.06.010  0.434
2015 Lee YT, Gibbons G, Lee SY, Nikolovska-Coleska Z, Dou Y. One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer. Protein Expression and Purification. 110: 89-94. PMID 25687285 DOI: 10.1016/j.pep.2015.02.007  0.309
2014 Zheng J, Ma LT, Ren QY, Li L, Zhang Y, Shi HJ, Liu Y, Li CH, Dou YQ, Li SD, Zhang H, Yang MH. The influence of astragalus polysaccharide and β-elemene on LX-2 cell growth, apoptosis and activation. Bmc Gastroenterology. 14: 224. PMID 25551689 DOI: 10.1186/s12876-014-0224-8  0.372
2014 Su X, Zhu G, Ding X, Lee SY, Dou Y, Zhu B, Wu W, Li H. Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1. Genes & Development. 28: 622-36. PMID 24589551 DOI: 10.1101/Gad.233239.113  0.343
2013 Jiang H, Lu X, Shimada M, Dou Y, Tang Z, Roeder RG. Regulation of transcription by the MLL2 complex and MLL complex-associated AKAP95. Nature Structural & Molecular Biology. 20: 1156-63. PMID 23995757 DOI: 10.1038/nsmb.2656  0.37
2013 Wu L, Lee SY, Zhou B, Nguyen UT, Muir TW, Tan S, Dou Y. ASH2L regulates ubiquitylation signaling to MLL: trans-regulation of H3 K4 methylation in higher eukaryotes. Molecular Cell. 49: 1108-20. PMID 23453805 DOI: 10.1016/J.Molcel.2013.01.033  0.38
2011 Katoh H, Qin ZS, Liu R, Wang L, Li W, Li X, Wu L, Du Z, Lyons R, Liu CG, Liu X, Dou Y, Zheng P, Liu Y. FOXP3 orchestrates H4K16 acetylation and H3K4 trimethylation for activation of multiple genes by recruiting MOF and causing displacement of PLU-1. Molecular Cell. 44: 770-84. PMID 22152480 DOI: 10.1016/j.molcel.2011.10.012  0.304
2011 Wu L, Zee BM, Wang Y, Garcia BA, Dou Y. The RING finger protein MSL2 in the MOF complex is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation. Molecular Cell. 43: 132-44. PMID 21726816 DOI: 10.1016/J.Molcel.2011.05.015  0.327
2011 Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD. Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions. Cell. 145: 692-706. PMID 21596426 DOI: 10.1016/J.Cell.2011.03.053  0.515
2010 Cao F, Chen Y, Cierpicki T, Liu Y, Basrur V, Lei M, Dou Y. An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain. Plos One. 5: e14102. PMID 21124902 DOI: 10.1371/Journal.Pone.0014102  0.516
2010 Li X, Dou Y. New perspectives for the regulation of acetyltransferase MOF. Epigenetics. 5: 185-8. PMID 20305383 DOI: 10.4161/epi.5.3.11372  0.372
2009 Li X, Wu L, Corsa CA, Kunkel S, Dou Y. Two mammalian MOF complexes regulate transcription activation by distinct mechanisms. Molecular Cell. 36: 290-301. PMID 19854137 DOI: 10.1016/j.molcel.2009.07.031  0.368
2009 Cao F, Li X, Hiew S, Brady H, Liu Y, Dou Y. Dicer independent small RNAs associate with telomeric heterochromatin. Rna (New York, N.Y.). 15: 1274-81. PMID 19460867 DOI: 10.1261/Rna.1423309  0.438
2008 Dou Y, Hess JL. Mechanisms of transcriptional regulation by MLL and its disruption in acute leukemia. International Journal of Hematology. 87: 10-8. PMID 18224408 DOI: 10.1007/s12185-007-0009-8  0.358
2007 Hyllus D, Stein C, Schnabel K, Schiltz E, Imhof A, Dou Y, Hsieh J, Bauer UM. PRMT6-mediated methylation of R2 in histone H3 antagonizes H3 K4 trimethylation. Genes & Development. 21: 3369-80. PMID 18079182 DOI: 10.1101/Gad.447007  0.431
2006 Lee S, Lee DK, Dou Y, Lee J, Lee B, Kwak E, Kong YY, Lee SK, Roeder RG, Lee JW. Coactivator as a target gene specificity determinant for histone H3 lysine 4 methyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 103: 15392-7. PMID 17021013 DOI: 10.1073/pnas.0607313103  0.317
2006 Dou Y, Milne TA, Ruthenburg AJ, Lee S, Lee JW, Verdine GL, Allis CD, Roeder RG. Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nature Structural & Molecular Biology. 13: 713-9. PMID 16878130 DOI: 10.1038/Nsmb1128  0.528
2005 Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, Wysocka J, Allis CD, Chait BT, Hess JL, Roeder RG. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell. 121: 873-85. PMID 15960975 DOI: 10.1016/J.Cell.2005.04.031  0.567
2005 Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, Allis CD. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell. 121: 859-72. PMID 15960974 DOI: 10.1016/J.Cell.2005.03.036  0.567
2005 Dou Y, Song X, Liu Y, Gorovsky MA. The H1 phosphorylation state regulates expression of CDC2 and other genes in response to starvation in Tetrahymena thermophila Molecular and Cellular Biology. 25: 3914-3922. PMID 15870266 DOI: 10.1128/Mcb.25.10.3914-3922.2005  0.704
2005 Milne TA, Hughes CM, Lloyd R, Yang Z, Rozenblatt-Rosen O, Dou Y, Schnepp RW, Krankel C, Livolsi VA, Gibbs D, Hua X, Roeder RG, Meyerson M, Hess JL. Menin and MLL cooperatively regulate expression of cyclin-dependent kinase inhibitors. Proceedings of the National Academy of Sciences of the United States of America. 102: 749-54. PMID 15640349 DOI: 10.1073/Pnas.0408836102  0.301
2004 Wang Y, Wysocka J, Sayegh J, Lee YH, Perlin JR, Leonelli L, Sonbuchner LS, McDonald CH, Cook RG, Dou Y, Roeder RG, Clarke S, Stallcup MR, Allis CD, Coonrod SA. Human PAD4 regulates histone arginine methylation levels via demethylimination. Science (New York, N.Y.). 306: 279-83. PMID 15345777 DOI: 10.1126/Science.1101400  0.573
2002 Dou Y, Bowen J, Liu Y, Gorovsky MA. Phosphorylation and an ATP-dependent process increase the dynamic exchange of H1 in chromatin Journal of Cell Biology. 158: 1161-1170. PMID 12356861 DOI: 10.1083/Jcb.200202131  0.712
2002 Dou Y, Gorovsky MA. Regulation of transcription by H1 phosphorylation in Tetrahymena is position independent and requires clustered sites Proceedings of the National Academy of Sciences of the United States of America. 99: 6142-6146. PMID 11972045 DOI: 10.1073/Pnas.092029599  0.664
2000 Dou Y, Gorovsky MA. Phosphorylation of linker histone H1 regulates gene expression in vivo by creating a charge patch Molecular Cell. 6: 225-231. PMID 10983971 DOI: 10.1016/S1097-2765(00)00024-1  0.677
1999 Dou Y, Mizzen CA, Abrams M, Allis CD, Gorovsky MA. Phosphorylation of linker histone H1 regulates gene expression in vivo by mimicking H1 removal. Molecular Cell. 4: 641-7. PMID 10549296 DOI: 10.1016/S1097-2765(00)80215-4  0.705
1999 Mizzen CA, Dou Y, Liu Y, Cook RG, Gorovsky MA, Allis CD. Identification and mutation of phosphorylation sites in a linker histone. Phosphorylation of macronuclear H1 is not essential for viability in tetrahymena. The Journal of Biological Chemistry. 274: 14533-6. PMID 10329641 DOI: 10.1074/jbc.274.21.14533  0.671
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