Joshua S. Kaminker, Ph.D. - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Srinivasan K, Friedman BA, Larson JL, Lauffer BE, Goldstein LD, Appling LL, Borneo J, Poon C, Ho T, Cai F, Steiner P, van der Brug MP, Modrusan Z, Kaminker JS, Hansen DV. Untangling the brain's neuroinflammatory and neurodegenerative transcriptional responses. Nature Communications. 7: 11295. PMID 27097852 DOI: 10.1038/ncomms11295  0.36
2016 Huntley MA, Lou M, Goldstein LD, Lawrence M, Dijkgraaf GJ, Kaminker JS, Gentleman R. Complex regulation of ADAR-mediated RNA-editing across tissues. Bmc Genomics. 17: 61. PMID 26768488 DOI: 10.1186/s12864-015-2291-9  0.36
2015 Yu M, Selvaraj SK, Liang-Chu MM, Aghajani S, Busse M, Yuan J, Lee G, Peale F, Klijn C, Bourgon R, Kaminker JS, Neve RM. A resource for cell line authentication, annotation and quality control. Nature. 520: 307-11. PMID 25877200 DOI: 10.1038/nature14397  0.36
2014 Chen Y, Wang Y, Modrusan Z, Sheng M, Kaminker JS. Regulation of neuronal gene expression and survival by basal NMDA receptor activity: a role for histone deacetylase 4. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 15327-39. PMID 25392500 DOI: 10.1523/JNEUROSCI.0569-14.2014  0.36
2013 Huntley MA, Larson JL, Chaivorapol C, Becker G, Lawrence M, Hackney JA, Kaminker JS. ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses. Bioinformatics (Oxford, England). 29: 3220-1. PMID 24078713 DOI: 10.1093/bioinformatics/btt551  0.36
2013 Lauffer BE, Mintzer R, Fong R, Mukund S, Tam C, Zilberleyb I, Flicke B, Ritscher A, Fedorowicz G, Vallero R, Ortwine DF, Gunzner J, Modrusan Z, Neumann L, Koth CM, ... ... Kaminker JS, et al. Histone deacetylase (HDAC) inhibitor kinetic rate constants correlate with cellular histone acetylation but not transcription and cell viability. The Journal of Biological Chemistry. 288: 26926-43. PMID 23897821 DOI: 10.1074/jbc.M113.490706  0.36
2013 Brauer MJ, Zhuang G, Schmidt M, Yao J, Wu X, Kaminker JS, Jurinka SS, Kolumam G, Chung AS, Jubb A, Modrusan Z, Ozawa T, James CD, Phillips H, Haley B, et al. Identification and analysis of in vivo VEGF downstream markers link VEGF pathway activity with efficacy of anti-VEGF therapies. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 19: 3681-92. PMID 23685835 DOI: 10.1158/1078-0432.CCR-12-3635  0.36
2013 Watkins TA, Wang B, Huntwork-Rodriguez S, Yang J, Jiang Z, Eastham-Anderson J, Modrusan Z, Kaminker JS, Tessier-Lavigne M, Lewcock JW. DLK initiates a transcriptional program that couples apoptotic and regenerative responses to axonal injury. Proceedings of the National Academy of Sciences of the United States of America. 110: 4039-44. PMID 23431164 DOI: 10.1073/pnas.1211074110  0.36
2012 Chen M, Maloney JA, Kallop DY, Atwal JK, Tam SJ, Baer K, Kissel H, Kaminker JS, Lewcock JW, Weimer RM, Watts RJ. Spatially coordinated kinase signaling regulates local axon degeneration. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 13439-53. PMID 23015435 DOI: 10.1523/JNEUROSCI.2039-12.2012  0.36
2012 Tam SJ, Richmond DL, Kaminker JS, Modrusan Z, Martin-McNulty B, Cao TC, Weimer RM, Carano RA, van Bruggen N, Watts RJ. Death receptors DR6 and TROY regulate brain vascular development. Developmental Cell. 22: 403-17. PMID 22340501 DOI: 10.1016/j.devcel.2011.11.018  0.36
2011 Wertz IE, Kusam S, Lam C, Okamoto T, Sandoval W, Anderson DJ, Helgason E, Ernst JA, Eby M, Liu J, Belmont LD, Kaminker JS, O'Rourke KM, Pujara K, Kohli PB, et al. Sensitivity to antitubulin chemotherapeutics is regulated by MCL1 and FBW7. Nature. 471: 110-4. PMID 21368834 DOI: 10.1038/nature09779  0.36
2010 Kowanetz M, Wu X, Lee J, Tan M, Hagenbeek T, Qu X, Yu L, Ross J, Korsisaari N, Cao T, Bou-Reslan H, Kallop D, Weimer R, Ludlam MJ, Kaminker JS, et al. Granulocyte-colony stimulating factor promotes lung metastasis through mobilization of Ly6G+Ly6C+ granulocytes. Proceedings of the National Academy of Sciences of the United States of America. 107: 21248-55. PMID 21081700 DOI: 10.1073/pnas.1015855107  0.36
2010 del Toro R, Prahst C, Mathivet T, Siegfried G, Kaminker JS, Larrivee B, Breant C, Duarte A, Takakura N, Fukamizu A, Penninger J, Eichmann A. Identification and functional analysis of endothelial tip cell-enriched genes. Blood. 116: 4025-33. PMID 20705756 DOI: 10.1182/blood-2010-02-270819  0.36
2010 Kan Z, Jaiswal BS, Stinson J, Janakiraman V, Bhatt D, Stern HM, Yue P, Haverty PM, Bourgon R, Zheng J, Moorhead M, Chaudhuri S, Tomsho LP, Peters BA, Pujara K, ... ... Kaminker JS, et al. Diverse somatic mutation patterns and pathway alterations in human cancers. Nature. 466: 869-73. PMID 20668451 DOI: 10.1038/nature09208  0.36
2010 Strasser GA, Kaminker JS, Tessier-Lavigne M. Microarray analysis of retinal endothelial tip cells identifies CXCR4 as a mediator of tip cell morphology and branching. Blood. 115: 5102-10. PMID 20154215 DOI: 10.1182/blood-2009-07-230284  0.36
2010 Yue P, Forrest WF, Kaminker JS, Lohr S, Zhang Z, Cavet G. Inferring the functional effects of mutation through clusters of mutations in homologous proteins. Human Mutation. 31: 264-71. PMID 20052764 DOI: 10.1002/humu.21194  0.36
2009 Jaiswal BS, Janakiraman V, Kljavin NM, Chaudhuri S, Stern HM, Wang W, Kan Z, Dbouk HA, Peters BA, Waring P, Dela Vega T, Kenski DM, Bowman KK, Lorenzo M, Li H, ... ... Kaminker JS, et al. Somatic mutations in p85alpha promote tumorigenesis through class IA PI3K activation. Cancer Cell. 16: 463-74. PMID 19962665 DOI: 10.1016/j.ccr.2009.10.016  0.36
2009 Haverty PM, Hon LS, Kaminker JS, Chant J, Zhang Z. High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors. Bmc Medical Genomics. 2: 21. PMID 19419571 DOI: 10.1186/1755-8794-2-21  0.36
2009 Hon LS, Zhang Y, Kaminker JS, Zhang Z. Computational prediction of the functional effects of amino acid substitutions in signal peptides using a model-based approach. Human Mutation. 30: 99-106. PMID 18570327 DOI: 10.1002/humu.20798  0.36
2008 Hon LS, Kaminker JS, Zhang Z. Computational approaches for predicting causal missense mutations in cancer genome projects Current Bioinformatics. 3: 46-55. DOI: 10.2174/157489308783329841  0.36
2007 Wood LD, Parsons DW, Jones S, Lin J, Sjöblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, ... ... Kaminker JS, et al. The genomic landscapes of human breast and colorectal cancers. Science (New York, N.Y.). 318: 1108-13. PMID 17932254 DOI: 10.1126/science.1145720  0.36
2007 Kaminker JS, Zhang Y, Watanabe C, Zhang Z. CanPredict: a computational tool for predicting cancer-associated missense mutations. Nucleic Acids Research. 35: W595-8. PMID 17537827 DOI: 10.1093/nar/gkm405  0.36
2007 Kaminker JS, Zhang Y, Waugh A, Haverty PM, Peters B, Sebisanovic D, Stinson J, Forrest WF, Bazan JF, Seshagiri S, Zhang Z. Distinguishing cancer-associated missense mutations from common polymorphisms. Cancer Research. 67: 465-73. PMID 17234753 DOI: 10.1158/0008-5472.CAN-06-1736  0.36
2002 Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, et al. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biology. 3: RESEARCH0085. PMID 12537574  0.36
2002 Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE. The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biology. 3: RESEARCH0084. PMID 12537573  0.36
2002 Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, et al. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biology. 3: RESEARCH0083. PMID 12537572  0.36
2002 Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, et al. Apollo: a sequence annotation editor. Genome Biology. 3: RESEARCH0082. PMID 12537571  0.36
2002 Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, et al. An integrated computational pipeline and database to support whole-genome sequence annotation. Genome Biology. 3: RESEARCH0081. PMID 12537570  0.36
2002 Kaminker JS, Canon J, Salecker I, Banerjee U. Control of photoreceptor axon target choice by transcriptional repression of Runt. Nature Neuroscience. 5: 746-50. PMID 12118258 DOI: 10.1038/nn889  0.36
2001 Kaminker JS, Singh R, Lebestky T, Yan H, Banerjee U. Redundant function of Runt Domain binding partners, Big brother and Brother, during Drosophila development. Development (Cambridge, England). 128: 2639-48. PMID 11526071  0.36
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