Amy E. Wang, Ph.D. - Related publications

University of California, Los Angeles, Los Angeles, CA 
Chromosomal Structures and Gene Activity
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Li K, Han J, Wang Z. Histone modifications centric-regulation in osteogenic differentiation. Cell Death Discovery. 7: 91. PMID 33941771 DOI: 10.1038/s41420-021-00472-6   
2021 Tran TQ, MacAlpine HK, Tripuraneni V, Mitra S, MacAlpine DM, Hartemink AJ. Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Research. PMID 33893157 DOI: 10.1101/gr.267237.120   
2021 Bragantini B, Charron C, Bourguet M, Paul A, Tiotiu D, Rothé B, Marty H, Terral G, Hessmann S, Decourty L, Chagot ME, Strub JM, Massenet S, Bertrand E, Quinternet M, et al. The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity. Nature Communications. 12: 1859. PMID 33767140 DOI: 10.1038/s41467-021-22077-4   
2021 Talbert PB, Henikoff S. The Yin and Yang of Histone Marks in Transcription. Annual Review of Genomics and Human Genetics. PMID 33781079 DOI: 10.1146/annurev-genom-120220-085159   
2021 Soo VWC, Warnecke T. Slaying the last unicorn: discovery of histones in the microalga . Royal Society Open Science. 8: 202023. PMID 33972876 DOI: 10.1098/rsos.202023   
2021 Nevil M, Duronio RJ. The awesome power of histone genetics. Molecular Cell. 81: 1593-1595. PMID 33861947 DOI: 10.1016/j.molcel.2021.03.023   
2021 Smith AR, Smith RG, Macdonald R, Marzi SJ, Burrage J, Troakes C, Al-Sarraj S, Mill J, Lunnon K. The histone modification H3K4me3 is altered at the locus in Alzheimer's disease brain. Future Science Oa. 7: FSO665. PMID 33815817 DOI: 10.2144/fsoa-2020-0161   
2021 Jarome TJ, Perez GA, Webb WM, Hatch KM, Navabpour S, Musaus M, Farrell K, Hauser RM, McFadden T, Martin K, Butler AA, Wang J, Lubin FD. Ubiquitination of Histone H2B by Proteasome Subunit RPT6 Controls Histone Methylation Chromatin Dynamics During Memory Formation. Biological Psychiatry. PMID 33934885 DOI: 10.1016/j.biopsych.2020.12.029   
2021 Rossmann MP, Zon LI. 'Enhancing' red cell fate through epigenetic mechanisms. Current Opinion in Hematology. PMID 33741760 DOI: 10.1097/MOH.0000000000000654   
2021 Kupp R, Ruff L, Terranova S, Nathan E, Ballereau S, Stark R, Sekhar Reddy Chilamakuri C, Hoffmann N, Wickham-Rahrmann K, Widdess M, Arabzade A, Zhao Y, Varadharajan S, Zheng T, Murugesan MK, et al. ZFTA-translocations constitute ependymoma chromatin remodeling and transcription factors. Cancer Discovery. PMID 33741711 DOI: 10.1158/2159-8290.CD-20-1052   
2021 Zappacosta F, Wagner CD, Della Pietra A, Gerhart SV, Keenan K, Korenchuck S, Quinn CJ, Barbash O, McCabe MT, Annan RS. A Chemical Acetylation based Mass Spectrometry Platform for Histone Methylation Profiling. Molecular & Cellular Proteomics : McP. 100067. PMID 33775892 DOI: 10.1016/j.mcpro.2021.100067   
2021 Shi J, Ma Y, Hua H, Liu Y, Li W, Yu H, Liu C. Dynamic Histone H3 Modifications Regulate Meiosis Initiation via Respiration. Frontiers in Cell and Developmental Biology. 9: 646214. PMID 33869198 DOI: 10.3389/fcell.2021.646214   
2021 Pinter S, Knodel F, Choudalakis M, Schnee P, Kroll C, Fuchs M, Broehm A, Weirich S, Roth M, Eisler SA, Zuber J, Jeltsch A, Rathert P. A functional LSD1 coregulator screen reveals a novel transcriptional regulatory cascade connecting R-loop homeostasis with epigenetic regulation. Nucleic Acids Research. PMID 33823549 DOI: 10.1093/nar/gkab180   
2021 Tomikawa J, Miyamoto K. Structural alteration of the nucleus for the reprogramming of gene expression. The Febs Journal. PMID 33891358 DOI: 10.1111/febs.15894   
2021 Hammond CM, Bao H, Hendriks IA, Carraro M, García-Nieto A, Liu Y, Reverón-Gómez N, Spanos C, Chen L, Rappsilber J, Nielsen ML, Patel DJ, Huang H, Groth A. DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Molecular Cell. PMID 33857403 DOI: 10.1016/j.molcel.2021.03.041   
2021 Kemp JP, Yang XC, Dominski Z, Marzluff WF, Duronio RJ. Super resolution light microscopy of the Histone Locus Body reveals a core-shell organization associated with expression of replication dependent histone genes. Molecular Biology of the Cell. mbcE20100645. PMID 33788585 DOI: 10.1091/mbc.E20-10-0645   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Li Y, Chen X, Lu C. The interplay between DNA and histone methylation: molecular mechanisms and disease implications. Embo Reports. e51803. PMID 33844406 DOI: 10.15252/embr.202051803   
2021 Zhou S, Zeng H, Huang J, Lei L, Tong X, Li S, Zhou Y, Guo H, Khan M, Luo L, Xiao R, Chen J, Zeng Q. Epigenetic Regulation of Melanogenesis. Ageing Research Reviews. 101349. PMID 33984527 DOI: 10.1016/j.arr.2021.101349   
2021 Marchione AD, Thompson Z, Kathrein KL. DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development. Briefings in Functional Genomics. PMID 33782688 DOI: 10.1093/bfgp/elab022   
2021 Min J, Liu K. Structures of chromatin modulators in complex with nucleosome. Current Opinion in Chemical Biology. 63: 105-114. PMID 33823458 DOI: 10.1016/j.cbpa.2021.02.018   
2021 Marinov GK, Trevino AE, Xiang T, Kundaje A, Grossman AR, Greenleaf WJ. Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum. Nature Genetics. PMID 33927397 DOI: 10.1038/s41588-021-00848-5   
2021 Wolff MR, Schmid A, Korber P, Gerland U. Effective dynamics of nucleosome configurations at the yeast promoter. Elife. 10. PMID 33666171 DOI: 10.7554/eLife.58394   
2021 Talbert PB, Henikoff S. Histone variants at a glance. Journal of Cell Science. 134. PMID 33771851 DOI: 10.1242/jcs.244749   
2021 Gimeno-Valiente F, Riffo-Campos ÁL, Torres L, Tarazona N, Gambardella V, Cervantes A, López-Rodas G, Franco L, Castillo J. Epigenetic Mechanisms Are Involved in the Oncogenic Properties of in Colorectal Cancer. Cancers. 13. PMID 33801071 DOI: 10.3390/cancers13061433   
2021 Liscovitch-Brauer N, Montalbano A, Deng J, Méndez-Mancilla A, Wessels HH, Moss NG, Kung CY, Sookdeo A, Guo X, Geller E, Jaini S, Smibert P, Sanjana NE. Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens. Nature Biotechnology. PMID 33927415 DOI: 10.1038/s41587-021-00902-x   
2021 Cole L, Kurscheid S, Nekrasov M, Domaschenz R, Vera DL, Dennis JH, Tremethick DJ. Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells. Nature Communications. 12: 2524. PMID 33953180 DOI: 10.1038/s41467-021-22688-x   
2021 Jiang J, Zhu J, Liu Q, Zhang T, Wen J, Xia J, Deng Y. Role of DNA methylation-related chromatin remodeling in aryl hydrocarbon receptor-dependent regulation of T-2 toxin highly inducible Cytochrome P450 1A4 gene. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21469. PMID 33788981 DOI: 10.1096/fj.202002570RR   
2021 Fortuny A, Chansard A, Caron P, Chevallier O, Leroy O, Renaud O, Polo SE. Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance. Nature Communications. 12: 2428. PMID 33893291 DOI: 10.1038/s41467-021-22575-5   
2021 Gan L, Wei Z, Yang Z, Li F, Wang Z. Updated Mechanisms of GCN5-The Monkey King of the Plant Kingdom in Plant Development and Resistance to Abiotic Stresses. Cells. 10. PMID 33922251 DOI: 10.3390/cells10050979   
2021 Xu H, Wu M, Ma X, Huang W, Xu Y. Function and Mechanism of Novel Histone Posttranslational Modifications in Health and Disease. Biomed Research International. 2021: 6635225. PMID 33763479 DOI: 10.1155/2021/6635225   
2021 Datta M, Staszewski O. Hdac1 and Hdac2 are essential for physiological maturation of a Cx3cr1 expressing subset of T-lymphocytes. Bmc Research Notes. 14: 135. PMID 33849645 DOI: 10.1186/s13104-021-05551-6   
2021 Piunti A, Shilatifard A. The roles of Polycomb repressive complexes in mammalian development and cancer. Nature Reviews. Molecular Cell Biology. PMID 33723438 DOI: 10.1038/s41580-021-00341-1   
2021 Morrison EA, Baweja L, Poirier MG, Wereszczynski J, Musselman CA. Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility. Nucleic Acids Research. PMID 33856458 DOI: 10.1093/nar/gkab246   
2021 Morita K, Hatanaka Y, Ihashi S, Asano M, Miyamoto K, Matsumoto K. Symmetrically dimethylated histone H3R2 promotes global transcription during minor zygotic genome activation in mouse pronuclei. Scientific Reports. 11: 10146. PMID 33980975 DOI: 10.1038/s41598-021-89334-w   
2021 Yamamoto-Fukuda T, Akiyama N, Kojima H. Super-enhancer Acquisition Drives FOXC2 Expression in Middle Ear Cholesteatoma. Journal of the Association For Research in Otolaryngology : Jaro. PMID 33861394 DOI: 10.1007/s10162-021-00801-7   
2021 Butel N, Yu A, Le Masson I, Borges F, Elmayan T, Taochy C, Gursanscky NR, Cao J, Bi S, Sawyer A, Carroll BJ, Vaucheret H. Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis. Nature Communications. 12: 2787. PMID 33986281 DOI: 10.1038/s41467-021-22995-3   
2021 Lu YX, Regan JC, Eßer J, Drews LF, Weinseis T, Stinn J, Hahn O, Miller RA, Grönke S, Partridge L. A TORC1-histone axis regulates chromatin organisation and non-canonical induction of autophagy to ameliorate ageing. Elife. 10. PMID 33988501 DOI: 10.7554/eLife.62233   
2021 Fan H, Guo Y, Tsai YH, Storey AJ, Kim A, Gong W, Edmondson RD, Mackintosh SG, Li H, Byrum SD, Tackett AJ, Cai L, Wang GG. A conserved BAH module within mammalian BAHD1 connects H3K27me3 to Polycomb gene silencing. Nucleic Acids Research. PMID 33823544 DOI: 10.1093/nar/gkab210   
2021 Cruz-Becerra G, Kadonaga JT. Reconstitution of Chromatin by Stepwise Salt Dialysis. Bio-Protocol. 11: e3977. PMID 33889671 DOI: 10.21769/BioProtoc.3977   
2021 Salim D, Bradford WD, Rubinstein B, Gerton JL. DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats. G3 (Bethesda, Md.). PMID 33729510 DOI: 10.1093/g3journal/jkab082   
2021 Valencia-Sánchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ. The structure of a virus-encoded nucleosome. Nature Structural & Molecular Biology. PMID 33927388 DOI: 10.1038/s41594-021-00585-7   
2021 Lu C, Coradin M, Janssen KA, Sidoli S, Garcia BA. Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases. Journal of the American Society For Mass Spectrometry. PMID 33818074 DOI: 10.1021/jasms.0c00451   
2021 Cai Q, Tian L, Xie JT, Huang QY, Feng MG, Keyhani NO. A fungal sirtuin modulates development and virulence in the insect pathogen, Beauveria bassiana. Environmental Microbiology. PMID 33817929 DOI: 10.1111/1462-2920.15497   
2021 Cui X, Zheng Y, Lu Y, Issakidis-Bourguet E, Zhou DX. Metabolic control of histone demethylase activity involved in plant response to high temperature. Plant Physiology. PMID 33793949 DOI: 10.1093/plphys/kiab020   
2021 Zhou D, Park JG, Wu Z, Huang H, Fiches GN, Biswas A, Li TW, Ma Q, Martinez-Sobrido L, Santoso N, Zhu J. FACT subunit SUPT16H associates with BRD4 and contributes to silencing of antiviral interferon signaling. Biorxiv : the Preprint Server For Biology. PMID 33907746 DOI: 10.1101/2021.04.21.440833   
2021 Liu Y, Zhang Y, Xue H, Cao M, Bai G, Mu Z, Yao Y, Sun S, Fang D, Huang J. Cryo-EM structure of SETD2/Set2 methyltransferase bound to a nucleosome containing oncohistone mutations. Cell Discovery. 7: 32. PMID 33972509 DOI: 10.1038/s41421-021-00261-6   
2021 Chen P, Li W, Li G. Structures and Functions of Chromatin Fibers. Annual Review of Biophysics. 50: 95-116. PMID 33957053 DOI: 10.1146/annurev-biophys-062920-063639   
2021 de Almeida RF, Fernandes M, de Godoy LMF. An updated map of Trypanosoma cruzi histone post-translational modifications. Scientific Data. 8: 93. PMID 33767201 DOI: 10.1038/s41597-021-00818-w