Wei Xie, Ph.D. - Publications

2013- School of Life Sciences Tsinghua University, Beijing, China, Beijing, Beijing Shi, China 
Chromosomal Structures and Gene Activity in Early Animal Development

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Year Citation  Score
2024 Li L, Lai F, Liu L, Lu X, Hu X, Liu B, Lin Z, Fan Q, Kong F, Xu Q, Xie W. Lineage regulators TFAP2C and NR5A2 function as bipotency activators in totipotent embryos. Nature Structural & Molecular Biology. PMID 38243114 DOI: 10.1038/s41594-023-01199-x  0.306
2024 Huang X, Balmer S, Lyu C, Xiang Y, Malik V, Wang H, Zhang Y, Cai B, Xie W, Hadjantonakis AK, Zhou H, Wang J. ZFP281 controls transcriptional and epigenetic changes promoting mouse pluripotent state transitions via DNMT3 and TET1. Developmental Cell. PMID 38237590 DOI: 10.1016/j.devcel.2023.12.018  0.384
2023 Qin D, Gu Y, Zhang Y, Wang S, Jiang T, Wang Y, Wang C, Chen C, Zhang T, Xu W, Wang H, Zhang K, Hu L, Li L, Xie W, et al. Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility. Nature Communications. 14: 8209. PMID 38081819 DOI: 10.1038/s41467-023-43480-z  0.32
2023 Ji S, Chen F, Stein P, Wang J, Zhou Z, Wang L, Zhao Q, Lin Z, Liu B, Xu K, Lai F, Xiong Z, Hu X, Kong T, Kong F, ... ... Xie W, et al. OBOX regulates murine zygotic genome activation and early development. Nature. PMID 37459895 DOI: 10.1038/s41586-023-06428-3  0.317
2023 Sun Y, Xu X, Zhao W, Zhang Y, Chen K, Li Y, Wang X, Zhang M, Xue B, Yu W, Hou Y, Wang C, Xie W, Li C, Kong D, et al. RAD21 is the core subunit of the cohesin complex involved in directing genome organization. Genome Biology. 24: 155. PMID 37381036 DOI: 10.1186/s13059-023-02982-1  0.311
2023 Wu X, Wu X, Xie W. Activation, decommissioning, and dememorization: enhancers in a life cycle. Trends in Biochemical Sciences. PMID 37221124 DOI: 10.1016/j.tibs.2023.04.005  0.337
2023 Huang X, Balmer S, Lyu C, Xiang Y, Malik V, Wang H, Zhang Y, Xie W, Hadjantonakis AK, Zhou H, Wang J. ZFP281 coordinates DNMT3 and TET1 for transcriptional and epigenetic control in pluripotent state transitions. Biorxiv : the Preprint Server For Biology. PMID 36993548 DOI: 10.1101/2023.03.24.534143  0.379
2023 Xu M, Li X, Xie W, Lin C, Wang Q, Tao Z. ETHYLENE INSENSITIVE3/EIN3-LIKE1 modulate FLOWERING LOCUS C expression via histone demethylase interaction. Plant Physiology. PMID 36852894 DOI: 10.1093/plphys/kiad131  0.335
2022 Liu Y, Xu Z, Shi J, Zhang Y, Yang S, Chen Q, Song C, Geng S, Li Q, Li J, Xu GL, Xie W, Lin H, Li X. DNA methyltransferases are complementary in maintaining DNA methylation in embryonic stem cells. Iscience. 25: 105003. PMID 36117996 DOI: 10.1016/j.isci.2022.105003  0.309
2022 Zou Z, Zhang C, Wang Q, Hou Z, Xiong Z, Kong F, Wang Q, Song J, Liu B, Liu B, Wang L, Lai F, Fan Q, Tao W, Zhao S, ... ... Xie W, et al. Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation. Science (New York, N.Y.). eabo7923. PMID 36074823 DOI: 10.1126/science.abo7923  0.373
2022 Meng TG, Lei WL, Lu X, Liu XY, Ma XS, Nie XQ, Zhao ZH, Li QN, Huang L, Hou Y, Ouyang YC, Li L, Tang TS, Schatten H, Xie W, et al. Maternal EHMT2 is essential for homologous chromosome segregation by regulating transcription in oocyte meiosis. International Journal of Biological Sciences. 18: 4513-4531. PMID 35864958 DOI: 10.7150/ijbs.75298  0.323
2022 Li L, Xie W. LncRNA HDAC11-AS1 Suppresses Atherosclerosis by Inhibiting HDAC11-Mediated Adropin Histone Deacetylation. Journal of Cardiovascular Translational Research. PMID 35505157 DOI: 10.1007/s12265-022-10248-7  0.328
2021 Zhang Y, Xie W. Building the genome architecture during the maternal to zygotic transition. Current Opinion in Genetics & Development. 72: 91-100. PMID 34896808 DOI: 10.1016/j.gde.2021.11.002  0.33
2021 Quan H, Tian H, Liu S, Xue Y, Zhang Y, Xie W, Gao YQ. Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes. Cells. 10. PMID 34685501 DOI: 10.3390/cells10102521  0.354
2021 Zhang X, Liu X, Du Z, Wei L, Fang H, Dong Q, Niu J, Li Y, Gao J, Zhang MQ, Xie W, Wang X. The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence. Genome Research. PMID 34140314 DOI: 10.1101/gr.275235.121  0.363
2021 Jiang W, Shi J, Zhao J, Wang Q, Cong D, Chen F, Zhang Y, Liu Y, Zhao J, Chen Q, Gu L, Zhou W, Wang C, Fang Z, Geng S, ... Xie W, et al. ZFP57 dictates allelic expression switch of target imprinted genes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33500348 DOI: 10.1073/pnas.2005377118  0.322
2021 Jiang TX, Ma S, Han X, Luo ZY, Zhu QQ, Chiba T, Xie W, Lin K, Qiu XB. Proteasome activator PA200 maintains stability of histone marks during transcription and aging. Theranostics. 11: 1458-1472. PMID 33391545 DOI: 10.7150/thno.48744  0.358
2021 Zhang B, Peng X, Xu F, Xie W. Tracking Histone Modifications in Embryos and Low-Input Samples Using Ultrasensitive STAR ChIP-Seq. Methods in Molecular Biology (Clifton, N.J.). 2214: 241-252. PMID 32944914 DOI: 10.1007/978-1-0716-0958-3_16  0.418
2020 Feng Y, Wang Y, Wang X, He X, Yang C, Naseri A, Pederson T, Zheng J, Zhang S, Xiao X, Xie W, Ma H. Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription. Genome Biology. 21: 296. PMID 33292531 DOI: 10.1186/s13059-020-02201-1  0.348
2020 Wang Q, Yu G, Ming X, Xia W, Xu X, Zhang Y, Zhang W, Li Y, Huang C, Xie H, Zhu B, Xie W. Imprecise DNMT1 activity coupled with neighbor-guided correction enables robust yet flexible epigenetic inheritance. Nature Genetics. PMID 32690947 DOI: 10.1038/S41588-020-0661-Y  0.415
2020 Yan P, Liu Z, Song M, Wu Z, Xu W, Li K, Ji Q, Wang S, Liu X, Yan K, Esteban CR, Ci W, Belmonte JCI, Xie W, Ren J, et al. Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming. Cell Reports. 32: 107870. PMID 32640235 DOI: 10.1016/j.celrep.2020.107870  0.322
2020 Zhang K, Wu DY, Zheng H, Wang Y, Sun QR, Liu X, Wang LY, Xiong WJ, Wang Q, Rhodes JDP, Xu K, Li L, Lin Z, Yu G, Xia W, ... ... Xie W, et al. Analysis of Genome Architecture during SCNT Reveals a Role of Cohesin in Impeding Minor ZGA. Molecular Cell. PMID 32579944 DOI: 10.1016/J.Molcel.2020.06.001  0.444
2020 Ye M, Yang ZY, Zhang Y, Xing YX, Xie QG, Zhou JH, Wang L, Xie W, Kee K, Chian RC. Single-cell multiomic analysis of in vivo and in vitro matured human oocytes. Human Reproduction (Oxford, England). PMID 32325493 DOI: 10.1093/Humrep/Deaa044  0.303
2020 Zhang H, Wu Z, Lu JY, Huang B, Zhou H, Xie W, Wang J, Shen X. DEAD-Box Helicase 18 Counteracts PRC2 to Safeguard Ribosomal DNA in Pluripotency Regulation. Cell Reports. 30: 81-97.e7. PMID 31914400 DOI: 10.1016/J.Celrep.2019.12.021  0.439
2019 Xiang Y, Zhang Y, Xu Q, Zhou C, Liu B, Du Z, Zhang K, Zhang B, Wang X, Gayen S, Liu L, Wang Y, Li Y, Wang Q, Kalantry S, ... ... Xie W, et al. Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency. Nature Genetics. PMID 31844322 DOI: 10.1038/S41588-019-0545-1  0.466
2019 Du Z, Zheng H, Kawamura YK, Zhang K, Gassler J, Powell S, Xu Q, Lin Z, Xu K, Zhou Q, Ozonov EA, Véron N, Huang B, Li L, Yu G, ... ... Xie W, et al. Polycomb Group Proteins Regulate Chromatin Architecture in Mouse Oocytes and Early Embryos. Molecular Cell. PMID 31837995 DOI: 10.1016/J.Molcel.2019.11.011  0.447
2019 Argelaguet R, Clark SJ, Mohammed H, Stapel LC, Krueger C, Kapourani CA, Imaz-Rosshandler I, Lohoff T, Xiang Y, Hanna CW, Smallwood S, Ibarra-Soria X, Buettner F, Sanguinetti G, Xie W, et al. Multi-omics profiling of mouse gastrulation at single-cell resolution. Nature. PMID 31827285 DOI: 10.1038/S41586-019-1825-8  0.454
2019 Gao XL, Tian WJ, Liu B, Wu J, Xie W, Shen Q. High mobility group nucleosomal binding domain 2 protects against microcephaly by maintaining global chromatin accessibility during corticogenesis. The Journal of Biological Chemistry. PMID 31699896 DOI: 10.1074/Jbc.Ra119.010616  0.39
2019 Luo M, Bai J, Liu B, Yan P, Zuo F, Sun H, Sun Y, Xu X, Song Z, Yang Y, Massagué J, Lan X, Lu Z, Chen YG, Deng H, ... Xie W, et al. H3K18ac Primes Mesendodermal Differentiation upon Nodal Signaling. Stem Cell Reports. PMID 31564646 DOI: 10.1016/J.Stemcr.2019.08.016  0.396
2019 Xia W, Xu J, Yu G, Yao G, Xu K, Ma X, Zhang N, Liu B, Li T, Lin Z, Chen X, Li L, Wang Q, Shi D, Shi S, ... ... Xie W, et al. Resetting histone modifications during human parental-to-zygotic transition. Science (New York, N.Y.). PMID 31273069 DOI: 10.1126/Science.Aaw5118  0.5
2019 Zheng H, Xie W. The role of 3D genome organization in development and cell differentiation. Nature Reviews. Molecular Cell Biology. PMID 31197269 DOI: 10.1038/S41580-019-0132-4  0.453
2019 Xu Q, Xiang Y, Wang Q, Wang L, Brind'Amour J, Bogutz AB, Zhang Y, Zhang B, Yu G, Xia W, Du Z, Huang C, Ma J, Zheng H, Li Y, ... ... Xie W, et al. SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development. Nature Genetics. PMID 31040401 DOI: 10.1038/S41588-019-0398-7  0.439
2019 Harris C, Cloutier M, Trotter M, Hinten M, Gayen S, Du Z, Xie W, Kalantry S. Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2. Elife. 8. PMID 30938678 DOI: 10.7554/Elife.44258  0.307
2019 Wang Y, Wang H, Zhang Y, Du Z, Si W, Fan S, Qin D, Wang M, Duan Y, Li L, Jiao Y, Li Y, Wang Q, Shi Q, Wu X, ... Xie W, et al. Reprogramming of Meiotic Chromatin Architecture during Spermatogenesis. Molecular Cell. 73: 547-561.e6. PMID 30735655 DOI: 10.1016/J.Molcel.2018.11.019  0.451
2018 Zhang Y, Wang C, Liu X, Yang Q, Ji H, Yang M, Xu M, Zhou Y, Xie W, Luo Z, Lin C. AFF3-DNA methylation interplay in maintaining the mono-allelic expression pattern of XIST in terminally differentiated cells. Journal of Molecular Cell Biology. PMID 30535390 DOI: 10.1093/jmcb/mjy074  0.371
2018 Towers AJ, Tremblay MW, Chung L, Li XL, Bey AL, Zhang W, Cao X, Wang X, Wang P, Duffney LJ, Siecinski SK, Xu S, Kim Y, Kong X, Gregory S, ... Xie W, et al. Epigenetic dysregulation of Oxtr in Tet1-deficient mice has implications for neuropsychiatric disorders. Jci Insight. 3. PMID 30518695 DOI: 10.1172/Jci.Insight.120592  0.35
2018 Zhang B, Wu X, Zhang W, Shen W, Sun Q, Liu K, Zhang Y, Wang Q, Li Y, Meng A, Xie W. Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition. Molecular Cell. 72: 673-686.e6. PMID 30444999 DOI: 10.1016/J.Molcel.2018.10.017  0.398
2018 Xu X, Wang L, Liu B, Xie W, Chen YG. Activin/Smad2 and Wnt/β-catenin upregulate HAS2 and ALDH3A2 to facilitate mesendoderm differentiation of human ESCs. The Journal of Biological Chemistry. PMID 30282636 DOI: 10.1074/Jbc.Ra118.003688  0.421
2018 Yu Z, Jiang K, Xu Z, Huang H, Qian N, Lu Z, Chen D, Di R, Yuan T, Du Z, Xie W, Lu X, Li H, Chai R, Yang Y, et al. Hoxc-Dependent Mesenchymal Niche Heterogeneity Drives Regional Hair Follicle Regeneration. Cell Stem Cell. PMID 30122476 DOI: 10.1016/J.Stem.2018.07.016  0.394
2018 Wu J, Xu J, Liu B, Yao G, Wang P, Lin Z, Huang B, Wang X, Li T, Shi S, Zhang N, Duan F, Ming J, Zhang X, Niu W, ... ... Xie W, et al. Publisher Correction: Chromatin analysis in human early development reveals epigenetic transition during ZGA. Nature. PMID 29925957 DOI: 10.1038/S41586-018-0267-Z  0.321
2018 Wu J, Xu J, Liu B, Yao G, Wang P, Lin Z, Huang B, Wang X, Li T, Shi S, Zhang N, Duan F, Ming J, Zhang X, Niu W, ... ... Xie W, et al. Chromatin analysis in human early development reveals epigenetic transition during ZGA. Nature. PMID 29720659 DOI: 10.1038/S41586-018-0080-8  0.507
2018 Li Y, Zheng H, Wang Q, Zhou C, Wei L, Liu X, Zhang W, Zhang Y, Du Z, Wang X, Xie W. Genome-wide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valleys. Genome Biology. 19: 18. PMID 29422066 DOI: 10.1186/S13059-018-1390-8  0.419
2017 Xu Q, Xie W. Epigenome in Early Mammalian Development: Inheritance, Reprogramming and Establishment. Trends in Cell Biology. PMID 29217127 DOI: 10.1016/J.Tcb.2017.10.008  0.467
2017 Zhang Y, Xiang Y, Yin Q, Du Z, Peng X, Wang Q, Fidalgo M, Xia W, Li Y, Zhao ZA, Zhang W, Ma J, Xu F, Wang J, Li L, ... Xie W, et al. Dynamic epigenomic landscapes during early lineage specification in mouse embryos. Nature Genetics. PMID 29203909 DOI: 10.1038/S41588-017-0003-X  0.449
2017 Ke Y, Xu Y, Chen X, Feng S, Liu Z, Sun Y, Yao X, Li F, Zhu W, Gao L, Chen H, Du Z, Xie W, Xu X, Huang X, et al. 3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis. Cell. 170: 367-381.e20. PMID 28709003 DOI: 10.1016/J.Cell.2017.06.029  0.451
2017 Du Z, Zheng H, Huang B, Ma R, Wu J, Zhang X, He J, Xiang Y, Wang Q, Li Y, Ma J, Zhang X, Zhang K, Wang Y, Zhang MQ, ... ... Xie W, et al. Allelic reprogramming of 3D chromatin architecture during early mammalian development. Nature. 547: 232-235. PMID 28703188 DOI: 10.1038/Nature23263  0.701
2017 Li W, Wang P, Zhang B, Zhang J, Ming J, Xie W, Na J. Differential regulation of H3S10 phosphorylation, mitosis progression and cell fate by Aurora Kinase B and C in mouse preimplantation embryos. Protein & Cell. PMID 28434146 DOI: 10.1007/S13238-017-0407-5  0.351
2017 Wang Y, Shen Y, Dai Q, Yang Q, Zhang Y, Wang X, Xie W, Luo Z, Lin C. A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron. Nucleic Acids Research. 45: 1177-1185. PMID 28180295 DOI: 10.1093/Nar/Gkw1051  0.372
2017 Qi Z, Li Y, Zhao B, Xu C, Liu Y, Li H, Zhang B, Wang X, Yang X, Xie W, Li B, Han JJ, Chen YG. BMP restricts stemness of intestinal Lgr5(+) stem cells by directly suppressing their signature genes. Nature Communications. 8: 13824. PMID 28059064 DOI: 10.1038/Ncomms13824  0.366
2016 Brunmeir R, Wu J, Peng X, Kim SY, Julien SG, Zhang Q, Xie W, Xu F. Comparative Transcriptomic and Epigenomic Analyses Reveal New Regulators of Murine Brown Adipogenesis. Plos Genetics. 12: e1006474. PMID 27923061 DOI: 10.1371/Journal.Pgen.1006474  0.439
2016 Zhang W, Xia W, Wang Q, Towers AJ, Chen J, Gao R, Zhang Y, Yen CA, Lee AY, Li Y, Zhou C, Liu K, Zhang J, Gu TP, Chen X, ... ... Xie W, et al. Isoform Switch of TET1 Regulates DNA Demethylation and Mouse Development. Molecular Cell. PMID 27916660 DOI: 10.1016/J.Molcel.2016.10.030  0.417
2016 Wang Y, Shen Y, Dai Q, Yang Q, Zhang Y, Wang X, Xie W, Luo Z, Lin C. A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron. Nucleic Acids Research. PMID 27899651 DOI: 10.1093/nar/gkw1051  0.372
2016 Xiong X, Panchenko T, Yang S, Zhao S, Yan P, Zhang W, Xie W, Li Y, Zhao Y, Allis CD, Li H. Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2. Nature Chemical Biology. PMID 27775714 DOI: 10.1038/Nchembio.2218  0.44
2016 Zheng H, Huang B, Zhang B, Xiang Y, Du Z, Xu Q, Li Y, Wang Q, Ma J, Peng X, Xu F, Xie W. Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals. Molecular Cell. 63: 1066-1079. PMID 27635762 DOI: 10.1016/J.Molcel.2016.08.032  0.463
2016 Zhang B, Zheng H, Huang B, Li W, Xiang Y, Peng X, Ming J, Wu X, Zhang Y, Xu Q, Liu W, Kou X, Zhao Y, He W, Li C, ... ... Xie W, et al. Allelic reprogramming of the histone modification H3K4me3 in early mammalian development. Nature. PMID 27626382 DOI: 10.1038/Nature19361  0.497
2016 Wu J, Huang B, Chen H, Yin Q, Liu Y, Xiang Y, Zhang B, Liu B, Wang Q, Xia W, Li W, Li Y, Ma J, Peng X, Zheng H, ... ... Xie W, et al. The landscape of accessible chromatin in mammalian preimplantation embryos. Nature. PMID 27309802 DOI: 10.1038/Nature18606  0.489
2016 Lv YC, Tang YY, Zhang P, Wan W, Yao F, He PP, Xie W, Mo ZC, Shi JF, Wu JF, Peng J, Liu D, Cayabyab FS, Zheng XL, Tang XY, et al. Histone Methyltransferase Enhancer of Zeste Homolog 2-Mediated ABCA1 Promoter DNA Methylation Contributes to the Progression of Atherosclerosis. Plos One. 11: e0157265. PMID 27295295 DOI: 10.1371/journal.pone.0157265  0.337
2015 Pan L, Xie W, Li KL, Yang Z, Xu J, Zhang W, Liu LP, Ren X, He Z, Wu J, Sun J, Wei HM, Wang D, Xie W, Li W, et al. Heterochromatin remodeling by CDK12 contributes to learning in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. PMID 26508632 DOI: 10.1073/Pnas.1502943112  0.398
2015 Xia B, Han D, Lu X, Sun Z, Zhou A, Yin Q, Zeng H, Liu M, Jiang X, Xie W, He C, Yi C. Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale. Nature Methods. PMID 26344045 DOI: 10.1038/Nmeth.3569  0.333
2015 Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4. PMID 25693566 DOI: 10.1038/Nature14217  0.663
2015 Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, Diao Y, Liang J, Zhao H, Lobanenkov VV, Ecker JR, et al. Chromatin architecture reorganization during stem cell differentiation. Nature. 518: 331-6. PMID 25693564 DOI: 10.1038/Nature14222  0.73
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Xie W, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.732
2015 Lin J, Chen H, Luo L, Lai Y, Xie W, Kee K. Creating a monomeric endonuclease TALE-I-SceI with high specificity and low genotoxicity in human cells. Nucleic Acids Research. 43: 1112-22. PMID 25541197 DOI: 10.1093/Nar/Gku1339  0.372
2015 Peng X, Wu J, Brunmeir R, Kim SY, Zhang Q, Ding C, Han W, Xie W, Xu F. TELP, a sensitive and versatile library construction method for next-generation sequencing. Nucleic Acids Research. 43: e35. PMID 25223787 DOI: 10.1093/Nar/Gku818  0.363
2014 Leung D, Du T, Wagner U, Xie W, Lee AY, Goyal P, Li Y, Szulwach KE, Jin P, Lorincz MC, Ren B. Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1. Proceedings of the National Academy of Sciences of the United States of America. 111: 6690-5. PMID 24757056 DOI: 10.1073/Pnas.1322273111  0.576
2013 Xie W, Ren B. Developmental biology. Enhancing pluripotency and lineage specification. Science (New York, N.Y.). 341: 245-7. PMID 23869010 DOI: 10.1126/Science.1236254  0.531
2013 Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022  0.689
2013 Rajagopal N, Xie W, Li Y, Wagner U, Wang W, Stamatoyannopoulos J, Ernst J, Kellis M, Ren B. RFECS: a random-forest based algorithm for enhancer identification from chromatin state. Plos Computational Biology. 9: e1002968. PMID 23526891 DOI: 10.1371/Journal.Pcbi.1002968  0.637
2013 Xie W, Qu L, Meng L, Liu C, Wu J, Shou C. PES1 regulates sensitivity of colorectal cancer cells to anticancer drugs. Biochemical and Biophysical Research Communications. 431: 460-5. PMID 23333390 DOI: 10.1016/J.Bbrc.2012.12.145  0.367
2012 Xie W, Feng Q, Su Y, Dong B, Wu J, Meng L, Qu L, Shou C. Transcriptional regulation of PES1 expression by c-Jun in colon cancer. Plos One. 7: e42253. PMID 22860098 DOI: 10.1371/Journal.Pone.0042253  0.317
2012 Xie W, Barr CL, Kim A, Yue F, Lee AY, Eubanks J, Dempster EL, Ren B. Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell. 148: 816-31. PMID 22341451 DOI: 10.1016/J.Cell.2011.12.035  0.665
2011 Kitada T, Schleker T, Sperling AS, Xie W, Gasser SM, Grunstein M. γH2A is a component of yeast heterochromatin required for telomere elongation. Cell Cycle (Georgetown, Tex.). 10: 293-300. PMID 21212735 DOI: 10.4161/Cc.10.2.14536  0.735
2010 Wu H, Coskun V, Tao J, Xie W, Ge W, Yoshikawa K, Li E, Zhang Y, Sun YE. Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes. Science (New York, N.Y.). 329: 444-8. PMID 20651149 DOI: 10.1126/Science.1190485  0.456
2009 Chin MH, Mason MJ, Xie W, Volinia S, Singer M, Peterson C, Ambartsumyan G, Aimiuwu O, Richter L, Zhang J, Khvorostov I, Ott V, Grunstein M, Lavon N, Benvenisty N, et al. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell. 5: 111-23. PMID 19570518 DOI: 10.1016/J.Stem.2009.06.008  0.605
2009 Sun W, Xie W, Xu F, Grunstein M, Li KC. Dissecting nucleosome free regions by a segmental semi-Markov model. Plos One. 4: e4721. PMID 19266098 DOI: 10.1371/Journal.Pone.0004721  0.647
2009 Xie W, Song C, Young NL, Sperling AS, Xu F, Sridharan R, Conway AE, Garcia BA, Plath K, Clark AT, Grunstein M. Histone h3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Molecular Cell. 33: 417-27. PMID 19250903 DOI: 10.1016/J.Molcel.2009.02.004  0.761
2008 Ferrari R, Pellegrini M, Horwitz GA, Xie W, Berk AJ, Kurdistani SK. Epigenetic reprogramming by adenovirus e1a. Science (New York, N.Y.). 321: 1086-8. PMID 18719284 DOI: 10.1126/Science.1155546  0.422
2007 Maherali N, Sridharan R, Xie W, Utikal J, Eminli S, Arnold K, Stadtfeld M, Yachechko R, Tchieu J, Jaenisch R, Plath K, Hochedlinger K. Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. Cell Stem Cell. 1: 55-70. PMID 18371336 DOI: 10.1016/J.Stem.2007.05.014  0.47
2007 Fan H, Zhao ZJ, Cheng YC, Shan YF, Lu ZH, Zhang JQ, Xie W. Gene induction and apoptosis in human hepatocellular carci-noma cells SMMC-7721 exposed to 5-aza-2'-deoxycytidine. Chinese Medical Journal. 120: 1626-31. PMID 17908484  0.327
2007 Xu F, Zhang Q, Zhang K, Xie W, Grunstein M. Sir2 deacetylates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast. Molecular Cell. 27: 890-900. PMID 17889663 DOI: 10.1016/J.Molcel.2007.07.021  0.611
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