Gena E. Stephens, Ph.D. - Related publications

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
Area:
the role that chromatin structure plays in gene regulation
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Steffen PA, Altmutter C, Dworschak E, Junttila S, Gyenesei A, Zhu X, Kockmann T, Ringrose L. The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival. Chromosoma. PMID 34331109 DOI: 10.1007/s00412-021-00762-z   
2021 Jos S, Gogoi H, Prasad TK, Hurakadli MA, Kamariah N, Padmanabhan B, Padavattan S. Molecular insights into α-synuclein interaction with individual human core histones, linker histone, and dsDNA. Protein Science : a Publication of the Protein Society. 30: 2121-2131. PMID 34382268 DOI: 10.1002/pro.4167   
2021 Kumar A, Nanda JS, Saini S, Singh J. An RNAi-independent role of AP1-like stress response factor Pap1 in centromere and mating-type silencing in . Journal of Biosciences. 46. PMID 34344846   
2021 Lan HC, Du TH, Yao YL, Yang WM. Ocular disease-associated mutations diminish the mitotic chromosome retention ability of PAX6. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194751. PMID 34500082 DOI: 10.1016/j.bbagrm.2021.194751   
2021 Jing Y, Tian G, Qin X, Liu Z, Li XD. Lysine succinylation on non-histone chromosomal protein HMG-17 (HMGN2) regulates nucleosomal DNA accessibility by disrupting the HMGN2-nucleosome association. Rsc Chemical Biology. 2: 1257-1262. PMID 34458839 DOI: 10.1039/d1cb00070e   
2021 Amemiya HM, Schroeder J, Freddolino PL. Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom. Transcription. 1-37. PMID 34499567 DOI: 10.1080/21541264.2021.1973865   
2021 He XL, Li JH, Wu Q. [Combinatorial CRISPR inversions of CTCF sites in cluster reveal complex insulator function]. Yi Chuan = Hereditas. 43: 758-774. PMID 34413016 DOI: 10.16288/j.yczz.21-131   
2021 Staneva DP, Carloni R, Auchynnikava T, Tong P, Arulanandam JA, Rappsilber J, Matthews KR, Allshire RC. A systematic analysis of chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination. Genome Research. PMID 34407985 DOI: 10.1101/gr.275368.121   
2021 Chen Z, Zhang Y, Guan Q, Zhang H, Luo J, Li J, Wei W, Xu X, Liao L, Wong J, Li J. Linking nuclear matrix-localized PIAS1 to chromatin SUMOylation via direct binding of histones H3 and H2A.Z. The Journal of Biological Chemistry. 101200. PMID 34537242 DOI: 10.1016/j.jbc.2021.101200   
2021 Stirpe A, Guidotti N, Northall SJ, Kilic S, Hainard A, Vadas O, Fierz B, Schalch T. SUV39 SET domains mediate crosstalk of heterochromatic histone marks. Elife. 10. PMID 34524082 DOI: 10.7554/eLife.62682   
2021 Wang Y, Zhai B, Tan T, Yang X, Zhang J, Song M, Tan Y, Yang X, Chu T, Zhang S, Wang S, Zhang L. ESA1 regulates meiotic chromosome axis and crossover frequency via acetylating histone H4. Nucleic Acids Research. PMID 34417612 DOI: 10.1093/nar/gkab722   
2021 Soochit W, Sleutels F, Stik G, Bartkuhn M, Basu S, Hernandez SC, Merzouk S, Vidal E, Boers R, Boers J, van der Reijden M, Geverts B, van Cappellen WA, van den Hout M, Ozgur Z, et al. CTCF chromatin residence time controls three-dimensional genome organization, gene expression and DNA methylation in pluripotent cells. Nature Cell Biology. PMID 34326481 DOI: 10.1038/s41556-021-00722-w   
2021 Cheung KL, Kim C, Zhou MM. The Functions of BET Proteins in Gene Transcription of Biology and Diseases. Frontiers in Molecular Biosciences. 8: 728777. PMID 34540900 DOI: 10.3389/fmolb.2021.728777   
2021 Saha A, Dalal Y. A glitch in the snitch: the role of linker histone H1 in shaping the epigenome in normal and diseased cells. Open Biology. 11: 210124. PMID 34343462 DOI: 10.1098/rsob.210124   
2021 Ibrahim A, Papin C, Mohideen-Abdul K, Le Gras S, Stoll I, Bronner C, Dimitrov S, Klaholz BP, Hamiche A. MeCP2 is a microsatellite binding protein that protects CA repeats from nucleosome invasion. Science (New York, N.Y.). 372. PMID 34324427 DOI: 10.1126/science.abd5581   
2021 Câmara AS, Schubert V, Mascher M, Houben A. A simple model explains the cell cycle-dependent assembly of centromeric nucleosomes in holocentric species. Nucleic Acids Research. PMID 34352103 DOI: 10.1093/nar/gkab648   
2021 Zufferey M, Liu Y, Tavernari D, Mina M, Ciriello G. Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers. Genome Biology. 22: 218. PMID 34344431 DOI: 10.1186/s13059-021-02436-6   
2021 Rappaport Y, Achache H, Falk R, Murik O, Ram O, Tzur YB. Bisection of the X chromosome disrupts the initiation of chromosome silencing during meiosis in Caenorhabditis elegans. Nature Communications. 12: 4802. PMID 34376665 DOI: 10.1038/s41467-021-24815-0   
2021 Xu Y, Qiao H. A Hypothesis: Linking Phase Separation to Meiotic Sex Chromosome Inactivation and Sex-Body Formation. Frontiers in Cell and Developmental Biology. 9: 674203. PMID 34485277 DOI: 10.3389/fcell.2021.674203   
2021 Eggers N, Becker PB. Cell-free genomics reveal intrinsic, cooperative and competitive determinants of chromatin interactions. Nucleic Acids Research. 49: 7602-7617. PMID 34181732 DOI: 10.1093/nar/gkab558   
2021 Eggers N, Becker PB. Cell-free genomics reveal intrinsic, cooperative and competitive determinants of chromatin interactions. Nucleic Acids Research. 49: 7602-7617. PMID 34181732 DOI: 10.1093/nar/gkab558   
2021 Lee SH, Rodriguez LRL, Majumdar R, De Marval PLM, Rodriguez-Puebla ML. CDK4 has the ability to regulate Aurora B and Cenpp expression in mouse keratinocytes. Oncology Letters. 22: 732. PMID 34429772 DOI: 10.3892/ol.2021.12993   
2021 Gao Y, Han M, Shang S, Wang H, Qi LS. Interrogation of the dynamic properties of higher-order heterochromatin using CRISPR-dCas9. Molecular Cell. PMID 34428454 DOI: 10.1016/j.molcel.2021.07.034   
2021 Höllmüller E, Greiner K, Kienle SM, Scheffner M, Marx A, Stengel F. Interactome of Site-Specifically Acetylated Linker Histone H1. Journal of Proteome Research. PMID 34351766 DOI: 10.1021/acs.jproteome.1c00396   
2021 Sato Y, Nakao M, Kimura H. Live-Cell Imaging Probes to Track Chromatin Modification Dynamics. Microscopy (Oxford, England). PMID 34329472 DOI: 10.1093/jmicro/dfab030   
2021 Zheng S, Bi Y, Chen H, Gong B, Jia S, Li H. Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14. Nucleic Acids Research. PMID 34365506 DOI: 10.1093/nar/gkab670   
2021 Enríquez P, Krajewski K, Strahl BD, Rothbart SB, Dowen RH, Rose RB. Binding specificity and function of the SWI/SNF subunit SMARCA4 bromodomain interaction with acetylated histone H3K14. The Journal of Biological Chemistry. 101145. PMID 34473995 DOI: 10.1016/j.jbc.2021.101145   
2021 Arimura Y, Shih RM, Froom R, Funabiki H. Structural features of nucleosomes in interphase and metaphase chromosomes. Molecular Cell. PMID 34478647 DOI: 10.1016/j.molcel.2021.08.010   
2021 Becker JR, Clifford G, Bonnet C, Groth A, Wilson MD, Chapman JR. BARD1 reads H2A lysine 15 ubiquitination to direct homologous recombination. Nature. PMID 34321663 DOI: 10.1038/s41586-021-03776-w   
2021 Douglas RN, Yang H, Zhang B, Chen C, Han F, Cheng J, Birchler JA. De novo centromere formation on chromosome fragments with an inactive centromere in maize (Zea mays). Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 34406545 DOI: 10.1007/s10577-021-09670-5   
2021 Boyson SP, Gao C, Quinn K, Boyd J, Paculova H, Frietze S, Glass KC. Functional Roles of Bromodomain Proteins in Cancer. Cancers. 13. PMID 34298819 DOI: 10.3390/cancers13143606   
2021 Dong Q, Yang J, Gao J, Li F. Recent insights into mechanisms preventing ectopic centromere formation. Open Biology. 11: 210189. PMID 34493071 DOI: 10.1098/rsob.210189   
2021 Mäkelä J, Uphoff S, Sherratt DJ. Nonrandom segregation of sister chromosomes by MukBEF. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34385314 DOI: 10.1073/pnas.2022078118   
2021 Zhou H, Xiong Y, Liu Z, Hou S, Zhou T, Xiong Y. Expression and prognostic significance of CBX2 in colorectal cancer: database mining for CBX family members in malignancies and vitro analyses. Cancer Cell International. 21: 402. PMID 34321009 DOI: 10.1186/s12935-021-02106-4   
2021 McManus CE, Mazzetto M, Wei G, Han M, Reinke V. The zinc-finger protein OEF-1 stabilizes histone modification patterns and promotes efficient splicing in the C. elegans germ line. G3 (Bethesda, Md.). PMID 34519784 DOI: 10.1093/g3journal/jkab329   
2021 Apte MS, Masuda H, Wheeler DL, Cooper JP. RNAi and Ino80 complex control rate limiting translocation step that moves rDNA to eroding telomeres. Nucleic Acids Research. PMID 34244792 DOI: 10.1093/nar/gkab586   
2021 Apte MS, Masuda H, Wheeler DL, Cooper JP. RNAi and Ino80 complex control rate limiting translocation step that moves rDNA to eroding telomeres. Nucleic Acids Research. PMID 34244792 DOI: 10.1093/nar/gkab586   
2021 Mashtalir N, Dao HT, Sankar A, Liu H, Corin AJ, Bagert JD, Ge EJ, D'Avino AR, Filipovski M, Michel BC, Dann GP, Muir TW, Kadoch C. Chromatin landscape signals differentially dictate the activities of mSWI/SNF family complexes. Science (New York, N.Y.). 373: 306-315. PMID 34437148 DOI: 10.1126/science.abf8705   
2021 Dossin F, Heard E. The Molecular and Nuclear Dynamics of X-Chromosome Inactivation. Cold Spring Harbor Perspectives in Biology. PMID 34312245 DOI: 10.1101/cshperspect.a040196   
2021 Huang C, Ying H, Yang X, Gao Y, Li T, Wu B, Ren M, Zhang Z, Ding J, Gao J, Wen D, Ye X, Liu L, Wang H, Sun G, et al. The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance. Cell Discovery. 7: 62. PMID 34373445 DOI: 10.1038/s41421-021-00286-x   
2021 Kramer EM, Tayjasanant PA, Cordone B. Scaling Laws for Mitotic Chromosomes. Frontiers in Cell and Developmental Biology. 9: 684278. PMID 34249936 DOI: 10.3389/fcell.2021.684278   
2021 Shi S, Zhou Y, Lu Y, Sun H, Xue J, Wu Z, Lei M. Ccq1-Raf2 interaction mediates CLRC recruitment to establish heterochromatin at telomeres. Life Science Alliance. 4. PMID 34493579 DOI: 10.26508/lsa.202101106   
2021 Foss EJ, Sripathy S, Gatbonton-Schwager T, Kwak H, Thiesen AH, Lao U, Bedalov A. Chromosomal Mcm2-7 distribution and the genome replication program in species from yeast to humans. Plos Genetics. 17: e1009714. PMID 34473702 DOI: 10.1371/journal.pgen.1009714   
2021 Escudeiro A, Adega F, Robinson TJ, Heslop-Harrison JS, Chaves R. Analysis of the Robertsonian (1;29) fusion in Bovinae reveals a common mechanism: insights into its clinical occurrence and chromosomal evolution. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 34331632 DOI: 10.1007/s10577-021-09667-0   
2021 Sudhamalla B, Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S. Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain. Chemistry, An Asian Journal. PMID 34448544 DOI: 10.1002/asia.202100793   
2021 Jeronimo C, Angel A, Nguyen VQ, Kim JM, Poitras C, Lambert E, Collin P, Mellor J, Wu C, Robert F. FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner. Molecular Cell. PMID 34380014 DOI: 10.1016/j.molcel.2021.07.010   
2021 Chen M, Foster JP, Lock IC, Leisenring NH, Daniel AR, Floyd W, Xu E, Davis IJ, Kirsch DG. Radiation-induced phosphorylation of a prion-like domain regulates transformation by FUS-CHOP. Cancer Research. PMID 34385184 DOI: 10.1158/0008-5472.CAN-20-1497   
2021 Bailey LT, Northall SJ, Schalch T. Breakers and amplifiers in chromatin circuitry: acetylation and ubiquitination control the heterochromatin machinery. Current Opinion in Structural Biology. 71: 156-163. PMID 34303934 DOI: 10.1016/j.sbi.2021.06.012   
2021 Choppakatla P, Dekker B, Cutts EE, Vannini A, Dekker J, Funabiki H. Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization. Elife. 10. PMID 34406118 DOI: 10.7554/eLife.68918   
2021 Katheeja MN, Das SP, Laha S. The budding yeast protein Chl1p is required for delaying progression through G1/S phase after DNA damage. Cell Division. 16: 4. PMID 34493312 DOI: 10.1186/s13008-021-00072-x