John E. Pool, Ph.D. - Publications

Cornell University, Ithaca, NY, United States 
 2011- University of Wisconsin, Madison, Madison, WI 
population genetics

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shpak M, Ghanavi HR, Lange JD, Pool JE, Stensmyr MC. Genomes from historical Drosophila melanogaster specimens illuminate adaptive and demographic changes across more than 200 years of evolution. Plos Biology. 21: e3002333. PMID 37824452 DOI: 10.1371/journal.pbio.3002333  0.738
2023 Feng S, DeGrey SP, Guédot C, Schoville SD, Pool JE. Genomic Diversity Illuminates the Species History and Environmental Adaptation of . Biorxiv : the Preprint Server For Biology. PMID 37461625 DOI: 10.1101/2023.07.03.547576  0.778
2023 Lollar MJ, Biewer-Heisler TJ, Danen CE, Pool JE. Hybrid Breakdown in Male Reproduction Between Recently-Diverged Drosophila melanogaster Populations Has a Complex and Variable Genetic Architecture. Evolution; International Journal of Organic Evolution. PMID 37071601 DOI: 10.1093/evolut/qpad060  0.425
2022 da Silva Ribeiro T, Galván JA, Pool JE. Maximum SNP FST Outperforms Full-Window Statistics for Detecting Soft Sweeps in Local Adaptation. Genome Biology and Evolution. 14. PMID 36152314 DOI: 10.1093/gbe/evac143  0.426
2022 Duranton M, Pool JE. Interactions between natural selection and recombination shape the genomic landscape of introgression. Molecular Biology and Evolution. PMID 35666817 DOI: 10.1093/molbev/msac122  0.829
2022 Huang Y, Lack JB, Hoppel GT, Pool JE. Gene Regulatory Evolution in Cold-Adapted Fly Populations Neutralizes Plasticity and May Undermine Genetic Canalization. Genome Biology and Evolution. 14. PMID 35380655 DOI: 10.1093/gbe/evac050  0.759
2022 Sprengelmeyer QD, Lack JB, Braun DT, Monette MJ, Pool JE. The Evolution of Larger Size in High Altitude Drosophila melanogaster has a Variable Genetic Architecture. G3 (Bethesda, Md.). PMID 35100377 DOI: 10.1093/g3journal/jkab454  0.839
2021 Lange JD, Bastide H, Lack JB, Pool JE. A Population Genomic Assessment of Three Decades of Evolution in a Natural Drosophila Population. Molecular Biology and Evolution. PMID 34971382 DOI: 10.1093/molbev/msab368  0.841
2021 Sprengelmeyer QD, Pool JE. Ethanol resistance in has increased in parallel cold-adapted populations and shows a variable genetic architecture within and between populations. Ecology and Evolution. 11: 15364-15376. PMID 34765183 DOI: 10.1002/ece3.8228  0.828
2021 Machado HE, Bergland A, Taylor RW, Tilk S, Behrman E, Dyer K, Fabian DK, Flatt T, González J, Karasov TL, Kim BY, Kozeretska I, Lazzaro BP, Merritt T, Pool JE, et al. Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila. Elife. 10. PMID 34155971 DOI: 10.7554/eLife.67577  0.437
2021 Huang Y, Lack JB, Hoppel GT, Pool JE. Parallel and Population-specific Gene Regulatory Evolution in Cold-Adapted Fly Populations. Genetics. PMID 33989401 DOI: 10.1093/genetics/iyab077  0.76
2020 Sprengelmeyer QD, Mansourian S, Lange JD, Matute DR, Cooper BS, Jirle EV, Stensmyr MC, Pool JE. Corrigendum to: Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History. Molecular Biology and Evolution. PMID 32594182 DOI: 10.1093/Molbev/Msaa074  0.792
2019 Sprengelmeyer QD, Mansourian S, Lange JD, Matute DR, Cooper BS, Jirle EV, Stensmyr MC, Pool JE. Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History. Molecular Biology and Evolution. PMID 31730190 DOI: 10.1093/Molbev/Msz271  0.824
2018 Mansourian S, Enjin A, Jirle EV, Ramesh V, Rehermann G, Becher PG, Pool JE, Stensmyr MC. Wild African Drosophila melanogaster Are Seasonal Specialists on Marula Fruit. Current Biology : Cb. 28: 3960-3968.e3. PMID 30528579 DOI: 10.1016/J.Cub.2018.10.033  0.418
2018 Lange JD, Pool JE. Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila. Genome Biology and Evolution. PMID 30010915 DOI: 10.1093/Gbe/Evy142  0.766
2018 Groth BR, Huang Y, Monette MJ, Pool JE. Directional selection reduces developmental canalization against genetic and environmental perturbations in Drosophila wings. Evolution; International Journal of Organic Evolution. PMID 29985527 DOI: 10.1111/Evo.13550  0.681
2017 Hervas S, Sanz E, Casillas S, Pool JE, Barbadilla A. PopFly: the Drosophila population genomics browser. Bioinformatics (Oxford, England). PMID 28472360 DOI: 10.1093/Bioinformatics/Btx301  0.504
2016 Pool JE, Braun DT, Lack JB. Parallel Evolution of Cold Tolerance Within Drosophila melanogaster. Molecular Biology and Evolution. PMID 27777283 DOI: 10.1093/Molbev/Msw232  0.745
2016 Lack JB, Lange JD, Tang AD, Corbett-Detig RB, Pool JE. A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus. Molecular Biology and Evolution. PMID 27687565 DOI: 10.1093/Molbev/Msw195  0.798
2016 Pool JE. Genetic Mapping by Bulk Segregant Analysis in Drosophila: Experimental Design and Simulation-Based Inference. Genetics. PMID 27655945 DOI: 10.1534/Genetics.116.192484  0.47
2016 Bastide H, Lange JD, Lack JB, Yassin A, Pool JE. A Variable Genetic Architecture of Melanic Evolution in Drosophila melanogaster. Genetics. PMID 27638419 DOI: 10.1534/Genetics.116.192492  0.825
2016 Lack JB, Yassin A, Sprengelmeyer QD, Johanning EJ, David JR, Pool JE. Life history evolution and cellular mechanisms associated with increased size in high-altitude Drosophila. Ecology and Evolution. 6: 5893-906. PMID 27547363 DOI: 10.1002/Ece3.2327  0.771
2016 Yassin A, Delaney EK, Reddiex AJ, Seher TD, Bastide H, Appleton NC, Lack JB, David JR, Chenoweth SF, Pool JE, Kopp A. The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila. Current Biology : Cb. PMID 27546577 DOI: 10.1016/J.Cub.2016.07.016  0.794
2016 Lange JD, Pool JE. A Haplotype Method Detects Diverse Scenarios of Local Adaptation from Genomic Sequence Variation. Molecular Ecology. PMID 27135633 DOI: 10.1111/Mec.13671  0.777
2016 Yassin A, Debat V, Bastide H, Gidaszewski N, David JR, Pool JE. Recurrent specialization on a toxic fruit in an island Drosophila population. Proceedings of the National Academy of Sciences of the United States of America. PMID 27044093 DOI: 10.1073/Pnas.1522559113  0.836
2016 Yassin A, Bastide H, Chung H, Veuille M, David JR, Pool JE. Ancient balancing selection at tan underlies female colour dimorphism in Drosophila erecta. Nature Communications. 7: 10400. PMID 26778363 DOI: 10.1038/Ncomms10400  0.808
2016 Gasch AP, Payseur BA, Pool JE. The Power of Natural Variation for Model Organism Biology. Trends in Genetics : Tig. PMID 26777596 DOI: 10.1016/J.Tig.2015.12.003  0.463
2016 Lack JB, Monette MJ, Johanning EJ, Sprengelmeyer QD, Pool JE. Decanalization of wing development accompanied the evolution of large wings in high-altitude Drosophila. Proceedings of the National Academy of Sciences of the United States of America. PMID 26755605 DOI: 10.1073/Pnas.1515964113  0.811
2015 Pool JE. The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions. Molecular Biology and Evolution. PMID 26354524 DOI: 10.1093/Molbev/Msv194  0.607
2015 Fabian DK, Lack JB, Mathur V, Schlötterer C, Schmidt PS, Pool JE, Flatt T. Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa. Journal of Evolutionary Biology. 28: 826-40. PMID 25704153 DOI: 10.1111/Jeb.12607  0.731
2015 Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, Langley CH, Pool JE. The Drosophila genome nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population. Genetics. 199: 1229-41. PMID 25631317 DOI: 10.1534/Genetics.115.174664  0.826
2014 Bastide H, Yassin A, Johanning EJ, Pool JE. Pigmentation in Drosophila melanogaster reaches its maximum in Ethiopia and correlates most strongly with ultra-violet radiation in sub-Saharan Africa. Bmc Evolutionary Biology. 14: 179. PMID 25115161 DOI: 10.1186/S12862-014-0179-Y  0.819
2013 Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/Pnas.1316009110  0.457
2013 Pitchers W, Pool JE, Dworkin I. Altitudinal clinal variation in wing size and shape in African Drosophila melanogaster: one cline or many? Evolution; International Journal of Organic Evolution. 67: 438-52. PMID 23356616 DOI: 10.1111/J.1558-5646.2012.01774.X  0.491
2012 Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH. Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture. Plos Genetics. 8: e1003080. PMID 23284287 DOI: 10.1371/Journal.Pgen.1003080  0.837
2012 Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018  0.835
2011 Wang L, Luzynski K, Pool JE, Janoušek V, Dufková P, Vysko?ilová MM, Teeter KC, Nachman MW, Munclinger P, Macholán M, Piálek J, Tucker PK. Measures of linkage disequilibrium among neighbouring SNPs indicate asymmetries across the house mouse hybrid zone. Molecular Ecology. 20: 2985-3000. PMID 21668551 DOI: 10.1111/J.1365-294X.2011.05148.X  0.659
2010 Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, Zheng H, Liu T, He W, Li K, Luo R, et al. Sequencing of 50 human exomes reveals adaptation to high altitude. Science (New York, N.Y.). 329: 75-8. PMID 20595611 DOI: 10.1126/Science.1190371  0.609
2010 Pool JE, Hellmann I, Jensen JD, Nielsen R. Population genetic inference from genomic sequence variation. Genome Research. 20: 291-300. PMID 20067940 DOI: 10.1101/Gr.079509.108  0.74
2010 Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZXP, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, Zheng H, Liu T, He W, Li K, Luo R, et al. Archaeology Augments Tibet's Genetic History--Response Science. 329: 1467-1468. DOI: 10.1126/Science.329.5998.1467-B  0.596
2009 Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB. Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science (New York, N.Y.). 326: 1663-7. PMID 20019281 DOI: 10.1126/Science.1178357  0.728
2009 Pool JE, Nielsen R. Inference of historical changes in migration rate from the lengths of migrant tracts. Genetics. 181: 711-9. PMID 19087958 DOI: 10.1534/Genetics.108.098095  0.496
2008 Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, ... ... Pool J, et al. The diploid genome sequence of an Asian individual. Nature. 456: 60-5. PMID 18987735 DOI: 10.1038/Nature07484  0.549
2008 Pool JE, Nielsen R. The impact of founder events on chromosomal variability in multiply mating species. Molecular Biology and Evolution. 25: 1728-36. PMID 18511425 DOI: 10.1093/Molbev/Msn124  0.579
2007 Pool JE, Nielsen R. Population size changes reshape genomic patterns of diversity. Evolution; International Journal of Organic Evolution. 61: 3001-6. PMID 17971168 DOI: 10.1111/J.1558-5646.2007.00238.X  0.65
2007 Pool JE, Aquadro CF. The genetic basis of adaptive pigmentation variation in Drosophila melanogaster. Molecular Ecology. 16: 2844-51. PMID 17614900 DOI: 10.1111/J.1365-294X.2007.03324.X  0.77
2007 Wong A, Jensen JD, Pool JE, Aquadro CF. Phylogenetic incongruence in the Drosophila melanogaster species group. Molecular Phylogenetics and Evolution. 43: 1138-50. PMID 17071113 DOI: 10.1016/J.Ympev.2006.09.002  0.79
2006 Pool JE, Aquadro CF. History and structure of sub-Saharan populations of Drosophila melanogaster. Genetics. 174: 915-29. PMID 16951082 DOI: 10.1534/Genetics.106.058693  0.787
2006 Pool JE, Wong A, Aquadro CF. Finding of male-killing Spiroplasma infecting Drosophila melanogaster in Africa implies transatlantic migration of this endosymbiont. Heredity. 97: 27-32. PMID 16685282 DOI: 10.1038/Sj.Hdy.6800830  0.713
2006 Pool JE, Bauer DuMont V, Mueller JL, Aquadro CF. A scan of molecular variation leads to the narrow localization of a selective sweep affecting both Afrotropical and cosmopolitan populations of Drosophila melanogaster. Genetics. 172: 1093-105. PMID 16322515 DOI: 10.1534/Genetics.105.049973  0.79
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