Hongzheng Dai, Ph.D. - Related publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Molecular evolution, population genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Rogers TF, Pizzari T, Wright AE. Multi-copy gene family evolution on the avian W chromosome. The Journal of Heredity. PMID 33758922 DOI: 10.1093/jhered/esab016   
2021 Zhang Y, Chen F, Creighton CJ. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints. Bmc Bioinformatics. 22: 135. PMID 33743584 DOI: 10.1186/s12859-021-04072-0   
2021 Wu PI, Ross C, Siegele DA, Hu JC. Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12. G3 (Bethesda, Md.). 11. PMID 33561236 DOI: 10.1093/g3journal/jkaa035   
2021 He X, Lu T, Zhou X. Whole Genome Sequencing and Comparative GenomicsAnalysis of Pectobacterium carotovorum IdentifiesKey Pathogenic Genes. Molecular Phylogenetics and Evolution. 107114. PMID 33744402 DOI: 10.1016/j.ympev.2021.107114   
2021 Concha C, Miranda CD, Rojas R, Godoy FA, Romero J. Characterization of a Novel Variant of the Quinolone-Resistance Gene () Carried by a Multi-Drug Resistant Strain Isolated from Farmed Salmon in Chile. Antibiotics (Basel, Switzerland). 10. PMID 33652626 DOI: 10.3390/antibiotics10030236   
2021 Farrar JS, Lownik JC, Way GW, Rodriguez MC, Celi FS, Martin RK. Identification of the transgene insertion site for an adipocyte-specific adiponectin-cre model and characterization of the functional consequences. Adipocyte. 10: 91-100. PMID 33565916 DOI: 10.1080/21623945.2021.1880083   
2021 Agius JE, Phalen DN, Rose K, Eden JS. Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming sp. Bacteria () Identified in Reptiles. Frontiers in Microbiology. 12: 635208. PMID 33737921 DOI: 10.3389/fmicb.2021.635208   
2021 Shi X, Yang H, Chen C, Hou J, Hanson KM, Albert PS, Ji T, Cheng J, Birchler JA. Genomic imbalance determines positive and negative modulation of gene expression in diploid maize. The Plant Cell. PMID 33677584 DOI: 10.1093/plcell/koab030   
2021 Kim S, Chung HY, Kwon JG, Choi SH, Lee JH. Fresh Crab Plays an Important Role as a Nutrient Reservoir for the Rapid Propagation of . Frontiers in Microbiology. 12: 645860. PMID 33767684 DOI: 10.3389/fmicb.2021.645860   
2021 Qing J, Du Q, Meng Y, Liu P, Du H, Wang L. Genome-wide identification and expression pattern analysis of the ribonuclease T2 family in Eucommia ulmoides. Scientific Reports. 11: 6900. PMID 33767357 DOI: 10.1038/s41598-021-86337-5   
2021 Xiao X, Deng H, Xu L, Wen F, Han X, Liao L, Li T. The complete chloroplast genome of (Lardizabalaceae). Mitochondrial Dna. Part B, Resources. 6: 826-827. PMID 33763592 DOI: 10.1080/23802359.2021.1884018   
2021 Vieira J, Pimenta J, Gomes A, Laia J, Rocha S, Heitzler P, Vieira CP. The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems. Scientific Reports. 11: 3710. PMID 33580108 DOI: 10.1038/s41598-021-83243-8   
2021 Nagy ED, Stevens JL, Yu N, Hubmeier CS, LaFaver N, Gillespie M, Gardunia B, Cheng Q, Johnson S, Vaughn AL, Vega-Sanchez ME, Deng M, Rymarquis L, Lawrence RJ, Garvey GS, et al. Novel disease resistance gene paralogs created by CRISPR/Cas9 in soy. Plant Cell Reports. PMID 33704523 DOI: 10.1007/s00299-021-02678-5   
2021 Zeng J, Huang C, Liu Y, Yuan C, Yu H, Song B. The complete chloroplast genome sequence of (Solanaceae). Mitochondrial Dna. Part B, Resources. 6: 1042-1043. PMID 33796732 DOI: 10.1080/23802359.2021.1899074   
2021 Yin M, Zhang S, Du X, Mateo RG, Guo W, Li A, Wang Z, Wu S, Chen J, Liu J, Ren G. Genomic analysis of Medicago ruthenica provides insights into its tolerance to abiotic stress and demographic history. Molecular Ecology Resources. PMID 33615703 DOI: 10.1111/1755-0998.13363   
2021 Zhang H, Xie J, Wang W, Wang J. Comparison of Brassica Genomes reveals asymmetrical gene retention between functional groups of genes in recurrent polyploidizations. Plant Molecular Biology. PMID 33742369 DOI: 10.1007/s11103-021-01137-9   
2021 He X, Zheng Z, Wang Q, Zhou M, Liao G, Ge Y, Cheng R. Complete chloroplast genome sequence of the medicinal plant ramie ( L. gaud) and its phylogenetic relationship to other Urticaceae species. Mitochondrial Dna. Part B, Resources. 6: 1136-1137. PMID 33796767 DOI: 10.1080/23802359.2021.1878959   
2021 Zhang G, Wang H, Yin X, Kong W, Wang Q, Chen Y, Wei J, Liu J, Guo X. Characterization of the complete chloroplast genome of N. P. Balakr. (Apiaceae) and its phylogenetic implications. Mitochondrial Dna. Part B, Resources. 6: 447-449. PMID 33628883 DOI: 10.1080/23802359.2020.1870902   
2021 Cui Y, Wu B, Peng A, Song X, Chen X. The Genome of Banana Leaf Blight Pathogen str. FS66 Harbors Widespread Gene Transfer From . Frontiers in Plant Science. 12: 629859. PMID 33613610 DOI: 10.3389/fpls.2021.629859   
2021 Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize. The Plant Cell. PMID 33656551 DOI: 10.1093/plcell/koab029   
2021 Smith TJ, Williamson CHD, Hill KK, Johnson SL, Xie G, Anniballi F, Auricchio B, Fernández RA, Caballero PA, Keim P, Sahl JW. The Distinctive Evolution of Strains and Their Botulinum Neurotoxin Type A and F Gene Clusters Is Influenced by Environmental Factors and Gene Interactions via Mobile Genetic Elements. Frontiers in Microbiology. 12: 566908. PMID 33716993 DOI: 10.3389/fmicb.2021.566908   
2021 Cornet L, Magain N, Baurain D, Lutzoni F. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria and cyanolichens. Molecular Phylogenetics and Evolution. 107100. PMID 33592234 DOI: 10.1016/j.ympev.2021.107100   
2021 Wan L, Zhou A, Xiao W, Zou B, Jiang Y, Xiao J, Deng C, Zhang Y, . Cytochrome P450 monooxygenase genes in the wild silkworm, . Peerj. 9: e10818. PMID 33604192 DOI: 10.7717/peerj.10818   
2021 Xu B, Chen X, Lu F, Sun Y, Sun H, Zhang J, Shen L, Pan Q, Liu C, Zhang X. Comparative Genomics of and New Targets for Molecular Diagnostics. Frontiers in Veterinary Science. 8: 640067. PMID 33681335 DOI: 10.3389/fvets.2021.640067   
2021 Yuan M, Zhang J, Gao Y, Yuan Z, Zhu Z, Wei Y, Wu T, Han J, Zhang Y. HMEJ-based safe-harbor genome editing enables efficient generation of cattle with increased resistance to tuberculosis. The Journal of Biological Chemistry. 100497. PMID 33675752 DOI: 10.1016/j.jbc.2021.100497   
2021 Liu D, Li L, Liu P. The complete chloroplast genome of (Plantaginaceae). Mitochondrial Dna. Part B, Resources. 6: 259-260. PMID 33553638 DOI: 10.1080/23802359.2020.1860706   
2021 Gautam D, Vats A, Pal P, Haldar A, De S. Characterization of Anti-Müllerian Hormone (AMH) Gene in Buffaloes and Goats. Frontiers in Veterinary Science. 8: 627094. PMID 33763463 DOI: 10.3389/fvets.2021.627094   
2021 Zhao Z, Li S, Ji C, Zhou Y, Li C, Wang W. Genetic Variation of the Serine Acetyltransferase Gene Family for Sulfur Assimilation in Maize. Genes. 12. PMID 33808582 DOI: 10.3390/genes12030437   
2021 Chen XH, Meng WW, Liu RC, Bai YX, Xu HQ, Ding R, Shao SC. Complete mitochondrial genome of the edible Basidiomycete mushroom (Aphyllophorales: Thelephoraceae) from China. Mitochondrial Dna. Part B, Resources. 6: 606-607. PMID 33659706 DOI: 10.1080/23802359.2020.1869620   
2021 Castillo AI, Almeida RPP. Evidence of gene nucleotide composition favoring replication and growth in a fastidious plant pathogen. G3 (Bethesda, Md.). PMID 33715000 DOI: 10.1093/g3journal/jkab076   
2021 Jiang M, Zhou YR, Zhan Y, Zhang HQ, Zhang Q, Guo Y, Zhang ZL. [Application of transcriptome sequencing and fusion genes analysis in the diagnosis of myeloid leukemia with normal karyotype]. Zhonghua Yi Xue Za Zhi. 101: 939-944. PMID 33789375 DOI: 10.3760/cma.j.cn112137-20201103-03005   
2021 Zhang Y, Zhang R, Deng C, Yang J, Deng G. The complete chloroplast genome sequence of (Moraceae). Mitochondrial Dna. Part B, Resources. 6: 299-301. PMID 33659654 DOI: 10.1080/23802359.2020.1863874   
2021 Lee HT, Liao CH, Huang CW, Chang YC, Hsu TH. The complete mitochondrial genome of (Gastropoda: Stromboidae). Mitochondrial Dna. Part B, Resources. 6: 591-592. PMID 33628941 DOI: 10.1080/23802359.2021.1875920   
2021 Zhou F, Lan K, Li X, Mei Y, Cai S, Wang J. The complete chloroplast genome sequence of Delile. Mitochondrial Dna. Part B, Resources. 6: 1134-1135. PMID 33796766 DOI: 10.1080/23802359.2021.1902411   
2021 Zhou F, Lan K, Li X, Mei Y, Cai S, Wang J. The complete chloroplast genome sequence of Delile. Mitochondrial Dna. Part B, Resources. 6: 1134-1135. PMID 33796766 DOI: 10.1080/23802359.2021.1902411   
2021 Li N, Bai JQ, Gao S, Yang L, Li J, Du SB, Wang XP. The complete molecular sequence of chloroplast genome of (L.) Sweet. Mitochondrial Dna. Part B, Resources. 6: 758-759. PMID 33763570 DOI: 10.1080/23802359.2021.1878958   
2021 Qin B, Sun K, Huang X. The complete chloroplast genome of , an endangered species of genus native to China. Mitochondrial Dna. Part B, Resources. 6: 684-685. PMID 33763549 DOI: 10.1080/23802359.2021.1882352   
2021 Lee HT, Liao CH, Huang CW, Ma CH, Hsu TH. The complete mitochondrial genome of (Cephalopoda: Sepiidae). Mitochondrial Dna. Part B, Resources. 6: 1192-1193. PMID 33829084 DOI: 10.1080/23802359.2021.1902873   
2021 Singh-Babak SD, Babak T, Fraser HB, Johnson AD. Lineage-specific selection and the evolution of virulence in the clade. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723044 DOI: 10.1073/pnas.2016818118   
2021 Guardiola-Avila I, Sánchez-Busó L, Acedo-Félix E, Gomez-Gil B, Zúñiga-Cabrera M, González-Candelas F, Noriega-Orozco L. Core and Accessory Genome Analysis of . Microorganisms. 9. PMID 33477474 DOI: 10.3390/microorganisms9010191   
2021 Zhu C, Zhang S, Bai X, Guan F, Chen Y, Zhao Y, Li M. The complete chloroplast genome of Mill. (Fagaceae). Mitochondrial Dna. Part B, Resources. 6: 1249-1250. PMID 33829098 DOI: 10.1080/23802359.2021.1903359   
2021 Gao RF, Wang JY, Liu KW, Yoshida K, Hsiao YY, Shi YX, Tsai KC, Chen YY, Mitsuda N, Liang CK, Wang ZW, Wang Y, Zhang DY, Huang L, Zhao X, et al. Comparative analysis of genomes reveals oomycete pathogenesis in crops. Heliyon. 7: e06317. PMID 33665461 DOI: 10.1016/j.heliyon.2021.e06317   
2021 Liu D, Li WQ, Xie XM, Liu DS, Li F, Gao G, Zhuang ZJ, Lu YZ, Li W. Characterization of the complete chloroplast genome of Mill. (Fagaceae). Mitochondrial Dna. Part B, Resources. 6: 868-869. PMID 33796661 DOI: 10.1080/23802359.2021.1886004   
2021 Panta M, Mishra A, Hoque MT, Atallah J. ClassifyTE: A stacking based prediction of hierarchical classification of transposable elements. Bioinformatics (Oxford, England). PMID 33682878 DOI: 10.1093/bioinformatics/btab146   
2021 Dasgupta I, Flotte TR, Keeler AM. CRISPR/Cas-Dependent and Nuclease-Free Therapeutic Gene Editing. Human Gene Therapy. 32: 275-293. PMID 33750221 DOI: 10.1089/hum.2021.013   
2021 Zhang S, Zhu C, Bai X, Li M, Chen Y, Zhao Y. The complete chloroplast genome of 'Chuizhili'. Mitochondrial Dna. Part B, Resources. 6: 1160-1161. PMID 33829080 DOI: 10.1080/23802359.2021.1903360   
2021 Chen D, Fu C, Lei Z, Li Y, Zhao T, Fan H, Hu T, Wang Q, Zong H. Complete mitochondrial genome and phylogenetic analysis of (Teleostei: Cypriniformes: Cyprinidae). Mitochondrial Dna. Part B, Resources. 6: 1118-1119. PMID 33796760 DOI: 10.1080/23802359.2021.1901622   
2021 Xia L, Qin Y, Liu J, Zhang H, Wu L, Gao S, Zhuang M, Xia J, Zhao S, Xu Y, Fu M, Sun Y, Tong Y, Zhang J, He P. Complete chloroplast genome of (Ulvales: Ulvaceae). Mitochondrial Dna. Part B, Resources. 6: 720-722. PMID 33763560 DOI: 10.1080/23802359.2020.1860696   
2021 Choi BS, Kim DH, Kim MS, Park JC, Lee YH, Kim HJ, Jeong CB, Hagiwara A, Souissi S, Lee JS. The genome of the European estuarine calanoid copepod Eurytemora affinis: Potential use in molecular ecotoxicology. Marine Pollution Bulletin. 166: 112190. PMID 33711609 DOI: 10.1016/j.marpolbul.2021.112190   
2021 Liu D, Tong BQ, Li WQ, Wang L, Xian Y, Han B, Dong X, Lu YZ, Li W, Xie XM. The first complete chloroplast genome of Thunb. (Rhamnaceae). Mitochondrial Dna. Part B, Resources. 6: 916-917. PMID 33796680 DOI: 10.1080/23802359.2021.1887772