Nolan C. Kane, Ph.D. - Publications

Affiliations: 
Ecology and Evolutionary Biology Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Plant Evolutionary Genetics

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Weiss-Lehman C, Tittes S, Kane NC, Hufbauer RA, Melbourne BA. Stochastic processes drive rapid genomic divergence during experimental range expansions. Proceedings. Biological Sciences. 286: 20190231. PMID 30940062 DOI: 10.1098/rspb.2019.0231  0.64
2018 Hübner S, Bercovich N, Todesco M, Mandel JR, Odenheimer J, Ziegler E, Lee JS, Baute GJ, Owens GL, Grassa CJ, Ebert DP, Ostevik KL, Moyers BT, Yakimowski S, Masalia RR, ... ... Kane NC, et al. Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance. Nature Plants. PMID 30598532 DOI: 10.1038/s41477-018-0329-0  1
2018 Smith CCR, Flaxman SM, Scordato ESC, Kane NC, Hund AK, Sheta BM, Safran RJ. Demographic inference in barn swallows using whole genome data shows signal for bottleneck and subspecies differentiation during the Holocene. Molecular Ecology. PMID 30176075 DOI: 10.1111/mec.14854  0.64
2018 Smith CCR, Tittes S, Mendieta JP, Collier-Zans E, Rowe HC, Rieseberg LH, Kane NC. Genetics of alternative splicing evolution during sunflower domestication. Proceedings of the National Academy of Sciences of the United States of America. PMID 29891718 DOI: 10.1073/pnas.1803361115  1
2017 Gao QM, Kane NC, Hulke BS, Reinert S, Pogoda CS, Tittes S, Prasifka JR. Genetic Architecture of Capitate Glandular Trichome Density in Florets of Domesticated Sunflower (Helianthus annuus L.). Frontiers in Plant Science. 8: 2227. PMID 29375602 DOI: 10.3389/fpls.2017.02227  0.64
2017 Semenov GA, Scordato ESC, Khaydarov DR, Smith CCR, Kane NC, Safran RJ. Effects of Assortative Mate Choice on the Genomic and Morphological Structure of a Hybrid Zone Between Two Bird Subspecies. Molecular Ecology. PMID 28987006 DOI: 10.1111/mec.14376  0.64
2017 Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 546: 148-152. PMID 28538728 DOI: 10.1038/nature22380  1
2016 Grassa CJ, Ebert DP, Kane NC, Rieseberg LH. Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.). Genome Announcements. 4. PMID 27635002 DOI: 10.1128/genomeA.00981-16  1
2016 Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS. Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. Molecular Ecology. PMID 27072809 DOI: 10.1111/mec.13615  0.64
2015 Kantar MB, Sosa CC, Khoury CK, Castañeda-Álvarez NP, Achicanoy HA, Bernau V, Kane NC, Marek L, Seiler G, Rieseberg LH. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.). Frontiers in Plant Science. 6: 841. PMID 26500675 DOI: 10.3389/fpls.2015.00841  0.36
2015 Vergara D, White KH, Keepers KG, Kane NC. The complete chloroplast genomes of Cannabis sativa and Humulus lupulus. Mitochondrial Dna. 1-2. PMID 26329384 DOI: 10.3109/19401736.2015.1079905  0.36
2015 Delmore KE, Hübner S, Kane NC, Schuster R, Andrew RL, Câmara F, Guigó R, Irwin DE. Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation. Molecular Ecology. 24: 1873-88. PMID 25808860 DOI: 10.1111/mec.13150  1
2015 Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH. Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives. The New Phytologist. 206: 830-8. PMID 25641359 DOI: 10.1111/nph.13255  1
2015 Whitney KD, Broman KW, Kane NC, Hovick SM, Randell RA, Rieseberg LH. Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower. Molecular Ecology. 24: 2194-211. PMID 25522096 DOI: 10.1111/mec.13044  1
2014 Lynch RC, Darcy JL, Kane NC, Nemergut DR, Schmidt SK. Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria. Frontiers in Microbiology. 5: 698. PMID 25566214 DOI: 10.3389/fmicb.2014.00698  1
2014 Tittes S, Kane NC. The genomics of adaptation, divergence and speciation: a congealing theory. Molecular Ecology. 23: 3938-40. PMID 25088551 DOI: 10.1111/mec.12855  0.64
2014 Marchand G, Huynh-Thu VA, Kane NC, Arribat S, Varès D, Rengel D, Balzergue S, Rieseberg LH, Vincourt P, Geurts P, Vignes M, Langlade NB. Bridging physiological and evolutionary time-scales in a gene regulatory network. The New Phytologist. 203: 685-96. PMID 24786523 DOI: 10.1111/nph.12818  1
2014 Bock DG, Kane NC, Ebert DP, Rieseberg LH. Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke. The New Phytologist. 201: 1021-30. PMID 24245977 DOI: 10.1111/nph.12560  1
2014 Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Molecular Ecology Resources. 14: 166-77. PMID 24103297 DOI: 10.1111/1755-0998.12163  1
2013 Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A. The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads. Bmc Genomics. 14: 686. PMID 24093210 DOI: 10.1186/1471-2164-14-686  1
2013 Sveinsson S, Gill N, Kane NC, Cronk Q. Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species. Bmc Genomics. 14: 502. PMID 23883295 DOI: 10.1186/1471-2164-14-502  1
2013 Bell GD, Kane NC, Rieseberg LH, Adams KL. RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations. Genome Biology and Evolution. 5: 1309-23. PMID 23677938 DOI: 10.1093/gbe/evt072  1
2013 Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, Kane NC, Bowers JE, Burke JM, Rieseberg LH. Genomic islands of divergence are not affected by geography of speciation in sunflowers. Nature Communications. 4: 1827. PMID 23652015 DOI: 10.1038/ncomms2833  1
2013 Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, et al. A road map for molecular ecology. Molecular Ecology. 22: 2605-26. PMID 23611646 DOI: 10.1111/mec.12319  1
2013 Vines TH, Andrew RL, Bock DG, Franklin MT, Gilbert KJ, Kane NC, Moore JS, Moyers BT, Renaut S, Rennison DJ, Veen T, Yeaman S. Mandated data archiving greatly improves access to research data. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 1304-8. PMID 23288929 DOI: 10.1096/fj.12-218164  1
2013 Andrew RL, Kane NC, Baute GJ, Grassa CJ, Rieseberg LH. Recent nonhybrid origin of sunflower ecotypes in a novel habitat. Molecular Ecology. 22: 799-813. PMID 23072494 DOI: 10.1111/mec.12038  1
2013 Kane NC, Burke JM, Marek L, Seiler G, Vear F, Baute G, Knapp SJ, Vincourt P, Rieseberg LH. Sunflower genetic, genomic and ecological resources. Molecular Ecology Resources. 13: 10-20. PMID 23039950 DOI: 10.1111/1755-0998.12023  1
2012 Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH. The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq. Biology. 1: 575-96. PMID 24832509 DOI: 10.3390/biology1030575  1
2012 Gilbert KJ, Andrew RL, Bock DG, Franklin MT, Kane NC, Moore JS, Moyers BT, Renaut S, Rennison DJ, Veen T, Vines TH. Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology. 21: 4925-30. PMID 22998190 DOI: 10.1111/j.1365-294X.2012.05754.x  1
2012 Staton SE, Bakken BH, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. The Plant Journal : For Cell and Molecular Biology. 72: 142-53. PMID 22691070 DOI: 10.1111/j.1365-313X.2012.05072.x  1
2012 Lai Z, Zou Y, Kane NC, Choi JH, Wang X, Rieseberg LH. Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing. Methods in Molecular Biology (Clifton, N.J.). 888: 119-33. PMID 22665279 DOI: 10.1007/978-1-61779-870-2_8  1
2012 Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, et al. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany. 99: 209-18. PMID 22058181 DOI: 10.3732/ajb.1100313  1
2011 Mayrose M, Kane NC, Mayrose I, Dlugosch KM, Rieseberg LH. Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress. Molecular Ecology. 20: 4683-94. PMID 21988641 DOI: 10.1111/j.1365-294X.2011.05301.x  1
2011 Blackman BK, Scascitelli M, Kane NC, Luton HH, Rasmussen DA, Bye RA, Lentz DL, Rieseberg LH. Sunflower domestication alleles support single domestication center in eastern North America. Proceedings of the National Academy of Sciences of the United States of America. 108: 14360-5. PMID 21844335 DOI: 10.1073/pnas.1104853108  1
2011 Kane NC, Barker MS, Zhan SH, Rieseberg LH. Molecular evolution across the Asteraceae: micro- and macroevolutionary processes. Molecular Biology and Evolution. 28: 3225-35. PMID 21693439 DOI: 10.1093/molbev/msr166  1
2011 Strasburg JL, Kane NC, Raduski AR, Bonin A, Michelmore R, Rieseberg LH. Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers. Molecular Biology and Evolution. 28: 1569-80. PMID 20952500 DOI: 10.1093/molbev/msq270  1
2010 Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, Lai Z, Stewart ML, Bekele E, Engels JM, Cronk QC, Rieseberg LH. Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome. Molecular Ecology Resources. 10: 1048-58. PMID 21565115 DOI: 10.1111/j.1755-0998.2010.02859.x  1
2010 Aurelle D, Baker AJ, Bottin L, Brouat C, Caccone A, Chaix A, Dhakal P, Ding Y, Duplantier JM, Fiedler W, Fietz J, Fong Y, Forcioli D, Freitas TR, ... ... Kane NC, et al. Permanent Genetic Resources added to the Molecular Ecology Resources Database 1 February 2010-31 March 2010. Molecular Ecology Resources. 10: 751-4. PMID 21565086 DOI: 10.1111/j.1755-0998.2010.02871.x  1
2010 Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH. EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics. Evolutionary Bioinformatics Online. 6: 143-9. PMID 21079755 DOI: 10.4137/EBO.S5861  1
2010 Geraldes A, Kane NC. Pushing north one bottleneck at a time: site frequency spectra tell the history of Sitka spruce. Molecular Ecology. 19: 3837-9. PMID 20854272 DOI: 10.1111/j.1365-294X.2010.04768.x  1
2010 Moyers BT, Kane NC. The genetics of adaptation to novel environments: selection on germination timing in Arabidopsis thaliana. Molecular Ecology. 19: 1270-2. PMID 20456230 DOI: 10.1111/j.1365-294X.2010.04558.x  1
2009 Kane NC, King MG, Barker MS, Raduski A, Karrenberg S, Yatabe Y, Knapp SJ, Rieseberg LH. Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species. Evolution; International Journal of Organic Evolution. 63: 2061-75. PMID 19473382 DOI: 10.1111/j.1558-5646.2009.00703.x  1
2009 Hudson ME, Kane NC. Plant genomes do a balancing act. Molecular Ecology. 18: 2743-5. PMID 19457202 DOI: 10.1111/j.1365-294X.2009.04205.x  1
2009 Kane NC, King MG. Using parentage analysis to examine gene flow and spatial genetic structure. Molecular Ecology. 18: 1551-2. PMID 19243509 DOI: 10.1111/j.1365-294X.2009.04110.x  1
2008 Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Molecular Biology and Evolution. 25: 2445-55. PMID 18728074 DOI: 10.1093/molbev/msn187  1
2008 Lai Z, Kane NC, Zou Y, Rieseberg LH. Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics. 179: 1881-90. PMID 18689879 DOI: 10.1534/genetics.108.091041  1
2008 Kane NC, Rieseberg LH. Genetics and evolution of weedy Helianthus annuus populations: adaptation of an agricultural weed. Molecular Ecology. 17: 384-94. PMID 17725567 DOI: 10.1111/j.1365-294X.2007.03467.x  1
2007 Kane NC, Baack EJ. The origins of weedy rice. Molecular Ecology. 16: 4423-5. PMID 17850268 DOI: 10.1111/j.1365-294X.2007.03520.x  0.48
2007 Ortiz-Barrientos D, Kane NC. Meeting review: American Genetics Association Symposium on the genetics of speciation. Molecular Ecology. 16: 2852-4. PMID 17614901 DOI: 10.1111/j.1365-294X.2007.03358.x  1
2007 Yatabe Y, Kane NC, Scotti-Saintagne C, Rieseberg LH. Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics. 175: 1883-93. PMID 17277373 DOI: 10.1534/genetics.106.064469  1
2007 Kane NC, Rieseberg LH. Selective sweeps reveal candidate genes for adaptation to drought and salt tolerance in common sunflower, Helianthus annuus. Genetics. 175: 1823-34. PMID 17237516 DOI: 10.1534/genetics.106.067728  1
2005 Kane NC, Rieseberg LH. Maize genetics: the treasure of the Sierra Madre. Current Biology : Cb. 15: R137-9. PMID 15723786 DOI: 10.1016/j.cub.2005.02.014  1
2004 Weinig C, Gravuer KA, Kane NC, Schmitt J. Testing adaptive plasticity to UV: costs and benefits of stem elongation and light-induced phenolics. Evolution; International Journal of Organic Evolution. 58: 2645-56. PMID 15696744  1
2004 Gross BL, Kane NC, Lexer C, Ludwig F, Rosenthal DM, Donovan LA, Rieseberg LH. Reconstructing the origin of Helianthus deserticola: survival and selection on the desert floor. The American Naturalist. 164: 145-56. PMID 15278840 DOI: 10.1086/422223  1
2004 Huber H, Kane NC, Heschel MS, von Wettberg EJ, Banta J, Leuck AM, Schmitt J. Frequency and microenvironmental pattern of selection on plastic shade-avoidance traits in a natural population of Impatiens capensis. The American Naturalist. 163: 548-63. PMID 15122502 DOI: 10.1086/382549  1
2003 Weinig C, Dorn LA, Kane NC, German ZM, Halldorsdottir SS, Ungerer MC, Toyonaga Y, Mackay TF, Purugganan MD, Schmitt J. Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana. Genetics. 165: 321-9. PMID 14504239  1
2002 Weinig C, Ungerer MC, Dorn LA, Kane NC, Toyonaga Y, Halldorsdottir SS, Mackay TF, Purugganan MD, Schmitt J. Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics. 162: 1875-84. PMID 12524356  1
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