Daniel R. Schrider, Ph.D. - Publications

Biology|Informatics and Computing Indiana University, Bloomington, Bloomington, IN, United States 
Evolutionary Genetics

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xue AT, Schrider DR, Kern AD. Discovery of ongoing selective sweeps within Anopheles mosquito populations using deep learning. Molecular Biology and Evolution. PMID 33022051 DOI: 10.1093/molbev/msaa259  0.96
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, ... ... Schrider DR, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.96
2019 Suvorov A, Hochuli J, Schrider DR. Accurate inference of tree topologies from multiple sequence alignments using deep learning. Systematic Biology. PMID 31504938 DOI: 10.1093/sysbio/syz060  0.92
2018 Price N, Moyers BT, Lopez L, Lasky JR, Monroe JG, Mullen JL, Oakley CG, Lin J, Ågren J, Schrider DR, Kern AD, McKay JK. Combining population genomics and fitness QTLs to identify the genetics of local adaptation in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29686078 DOI: 10.1073/Pnas.1719998115  0.96
2018 Schrider DR, Ayroles J, Matute DR, Kern AD. Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia. Plos Genetics. 14: e1007341. PMID 29684059 DOI: 10.1371/Journal.Pgen.1007341  0.96
2018 Kern AD, Schrider DR. diploS/HIC: An Updated Approach to Classifying Selective Sweeps. G3 (Bethesda, Md.). PMID 29626082 DOI: 10.1534/G3.118.200262  0.96
2018 Schrider DR, Kern AD. Supervised Machine Learning for Population Genetics: A New Paradigm. Trends in Genetics : Tig. PMID 29331490 DOI: 10.1016/J.Tig.2017.12.005  0.96
2017 Schrider DR, Kern AD. Soft sweeps are the dominant mode of adaptation in the human genome. Molecular Biology and Evolution. PMID 28482049 DOI: 10.1093/Molbev/Msx154  0.96
2017 Adrion JR, Song MJ, Schrider DR, Hahn MW, Schaack S. Genome-wide estimates of transposable element insertion and deletion rates in Drosophila melanogaster. Genome Biology and Evolution. PMID 28338986 DOI: 10.1093/Gbe/Evx050  0.96
2016 Schrider DR, Shanku AG, Kern AD. Effects of Linked Selective Sweeps on Demographic Inference and Model Selection. Genetics. PMID 27605051 DOI: 10.1534/Genetics.116.190223  0.96
2016 Kern AD, Schrider DR. discoal: flexible coalescent simulations with selection. Bioinformatics (Oxford, England). PMID 27559153 DOI: 10.1093/Bioinformatics/Btw556  0.96
2016 Schrider DR, Kern AD. S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning. Plos Genetics. 12: e1005928. PMID 26977894 DOI: 10.1371/Journal.Pgen.1005928  0.96
2016 Schrider DR, Hahn MW, Begun DJ. Parallel evolution of copy-number variation across continents in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26809315 DOI: 10.1093/Molbev/Msw014  0.96
2016 Fletcher RS, Herrmann D, Mullen JL, Li Q, Schrider DR, Price N, Lin J, Grogan K, Kern A, McKay JK. Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing. G3 (Bethesda, Md.). PMID 26801646 DOI: 10.1534/G3.115.021279  0.96
2015 Schrider DR, Kern AD. Inferring selective constraint from population genomic data suggests recent regulatory turnover in the human brain. Genome Biology and Evolution. PMID 26590212 DOI: 10.1093/Gbe/Evv228  0.96
2015 Keith N, Tucker AE, Jackson CE, Sung W, Lledó JI, Schrider DR, Schaack S, Dudycha JL, Ackerman MS, Younge AJ, Shaw JR, Lynch M. High mutational rates of large-scale duplication and deletion in Daphnia pulex. Genome Research. PMID 26518480 DOI: 10.1101/Gr.191338.115  0.96
2015 Schrider DR, Mendes FK, Hahn MW, Kern AD. Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps. Genetics. 200: 267-84. PMID 25716978 DOI: 10.1534/Genetics.115.174912  0.96
2014 Denton JF, Lugo-Martinez J, Tucker AE, Schrider DR, Warren WC, Hahn MW. Extensive error in the number of genes inferred from draft genome assemblies. Plos Computational Biology. 10: e1003998. PMID 25474019 DOI: 10.1371/Journal.Pcbi.1003998  0.96
2014 Schrider DR, Kern AD. Discovering functional DNA elements using population genomic information: a proof of concept using human mtDNA. Genome Biology and Evolution. 6: 1542-8. PMID 24916662 DOI: 10.1093/Gbe/Evu116  0.96
2013 Schrider DR, Houle D, Lynch M, Hahn MW. Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster. Genetics. 194: 937-54. PMID 23733788 DOI: 10.1534/Genetics.113.151670  0.96
2013 Schrider DR, Begun DJ, Hahn MW. Detecting highly differentiated copy-number variants from pooled population sequencing. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 344-55. PMID 23424139  0.96
2013 Schrider DR, Navarro FC, Galante PA, Parmigiani RB, Camargo AA, Hahn MW, de Souza SJ. Gene copy-number polymorphism caused by retrotransposition in humans. Plos Genetics. 9: e1003242. PMID 23359205 DOI: 10.1371/Journal.Pgen.1003242  0.96
2012 Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018  0.96
2011 Schrider DR, Stevens K, Cardeño CM, Langley CH, Hahn MW. Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster. Genome Research. 21: 2087-95. PMID 22135405 DOI: 10.1101/Gr.116434.110  0.96
2011 Schrider DR, Gout JF, Hahn MW. Very few RNA and DNA sequence differences in the human transcriptome. Plos One. 6: e25842. PMID 22022455 DOI: 10.1371/Journal.Pone.0025842  0.96
2011 Schrider DR, Hourmozdi JN, Hahn MW. Pervasive multinucleotide mutational events in eukaryotes. Current Biology : Cb. 21: 1051-4. PMID 21636278 DOI: 10.1016/J.Cub.2011.05.013  0.96
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Schrider DR, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687  0.96
2010 Schrider DR, Hahn MW. Gene copy-number polymorphism in nature. Proceedings. Biological Sciences / the Royal Society. 277: 3213-21. PMID 20591863 DOI: 10.1098/Rspb.2010.1180  0.96
2010 Schrider DR, Hahn MW. Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications. Molecular Biology and Evolution. 27: 103-11. PMID 19745000 DOI: 10.1093/Molbev/Msp210  0.96
2009 Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1419-27. PMID 19754271 DOI: 10.1089/Cmb.2009.0085  0.96
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