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Ruibin Xi, Ph.D. - Publications

Affiliations: 
2009 Mathematics Washington University, Saint Louis, St. Louis, MO 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ. Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature Genetics. PMID 32404988 DOI: 10.1038/S41588-020-0634-1  0.344
2020 Cui Y, Chen H, Xi R, Cui H, Zhao Y, Xu E, Yan T, Lu X, Huang F, Kong P, Li Y, Zhu X, Wang J, Zhu W, Wang J, et al. Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma. Cell Research. PMID 32398863 DOI: 10.1038/S41422-020-0333-6  0.344
2020 Wu L, Wang H, Xia Y, Xi R. CNV-BAC: Copy Number Variation Detection in Bacterial Circular Genome. Bioinformatics (Oxford, England). PMID 32219377 DOI: 10.1093/Bioinformatics/Btaa208  0.346
2020 Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ. Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature Genetics. PMID 32025003 DOI: 10.1038/S41588-019-0576-7  0.382
2020 Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, Brors B, et al. Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature Communications. 11: 733. PMID 32024817 DOI: 10.1038/S41467-019-13824-9  0.378
2019 Zhang Y, Yang L, Kucherlapati M, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, ... ... Xi R, et al. Global impact of somatic structural variation on the DNA methylome of human cancers. Genome Biology. 20: 209. PMID 31610796 DOI: 10.1186/S13059-019-1818-9  0.336
2019 Xia Y, Liu Y, Deng M, Xi R. Detecting virus integration sites based on multiple related sequencing data by VirTect. Bmc Medical Genomics. 12: 19. PMID 30704462 DOI: 10.1186/S12920-018-0461-8  0.302
2018 Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, ... ... Xi R, et al. A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases. Cell Reports. 24: 515-527. PMID 29996110 DOI: 10.1016/J.Celrep.2018.06.025  0.364
2018 Duan M, Hao J, Cui S, Worthley DL, Zhang S, Wang Z, Shi J, Liu L, Wang X, Ke A, Cao Y, Xi R, Zhang X, Zhou J, Fan J, et al. Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing. Cell Research. PMID 29327728 DOI: 10.1038/Cr.2018.11  0.333
2017 Xia Y, Liu Y, Deng M, Xi R. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms. Bioinformatics (Oxford, England). PMID 29036467 DOI: 10.1093/Bioinformatics/Btx455  0.327
2017 Chang J, Tan W, Ling Z, Xi R, Shao M, Chen M, Luo Y, Zhao Y, Liu Y, Huang X, Xia Y, Hu J, Parker JS, Marron D, Cui Q, et al. Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations. Nature Communications. 8: 15290. PMID 28548104 DOI: 10.1038/Ncomms15290  0.352
2017 Zhang Y, Kwok-Shing Ng P, Kucherlapati M, Chen F, Liu Y, Tsang YH, de Velasco G, Jeong KJ, Akbani R, Hadjipanayis A, Pantazi A, Bristow CA, Lee E, Mahadeshwar HS, Tang J, ... ... Xi R, et al. A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations. Cancer Cell. PMID 28528867 DOI: 10.1016/J.Ccell.2017.04.013  0.32
2017 Xia Y, Liu Y, Deng M, Xi R. Pysim-sv: a package for simulating structural variation data with GC-biases. Bmc Bioinformatics. 18: 53. PMID 28361688 DOI: 10.1186/S12859-017-1464-8  0.326
2016 Ping Z, Xia Y, Shen T, Parekh V, Siegal GP, Eltoum IE, He J, Chen D, Deng M, Xi R, Shen D. A microscopic landscape of the invasive breast cancer genome. Scientific Reports. 6: 27545. PMID 27283966 DOI: 10.1038/Srep27545  0.335
2016 Xi R, Lee S, Xia Y, Kim TM, Park PJ. Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants. Nucleic Acids Research. PMID 27260798 DOI: 10.1093/Nar/Gkw491  0.421
2016 Xi R, Lin N. Direct regression modelling of high-order moments in big data Statistics and Its Interface. 9: 445-452. DOI: 10.4310/Sii.2016.V9.N4.A4  0.407
2015 Shi JY, Xing Q, Duan M, Wang ZC, Yang LX, Zhao YJ, Wang XY, Liu Y, Deng M, Ding ZB, Ke AW, Zhou J, Fan J, Cao Y, Wang J, ... Xi R, et al. Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity. Oncotarget. PMID 26672766 DOI: 10.18632/Oncotarget.6558  0.309
2015 Nam JY, Kim NK, Kim SC, Joung JG, Xi R, Lee S, Park PJ, Park WY. Evaluation of somatic copy number estimation tools for whole-exome sequencing data. Briefings in Bioinformatics. PMID 26210357 DOI: 10.1093/Bib/Bbv055  0.407
2015 Gao Q, Wang Z, Xi R, Fan J. Abstract 4814: Inferring liver cancer evolution from spatial and temporal genomic heterogeneity Cancer Research. 75: 4814-4814. DOI: 10.1158/1538-7445.Am2015-4814  0.319
2014 Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ. Erratum: Diverse mechanisms of somatic structural variations in human cancer genomes (Cell (2013) 153 (919-929)) Cell. 157. DOI: 10.1016/J.Cell.2014.05.020  0.347
2013 Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ. Diverse mechanisms of somatic structural variations in human cancer genomes. Cell. 153: 919-29. PMID 23663786 DOI: 10.1016/J.Cell.2013.04.010  0.39
2013 Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ. Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes. Genome Research. 23: 217-27. PMID 23132910 DOI: 10.1101/Gr.140301.112  0.387
2012 Xi R, Lee S, Park PJ. A survey of copy-number variation detection tools based on high-throughput sequencing data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit7.19. PMID 23074071 DOI: 10.1002/0471142905.Hg0719S75  0.363
2012 Hammerman PS, Voet D, Lawrence MS, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Imielinski M, Helman E, Hernandez B, Pho NH, ... ... Xi R, et al. Comprehensive genomic characterization of squamous cell lung cancers Nature. 489: 519-525. PMID 22960745 DOI: 10.1038/Nature11404  0.35
2012 Xi R, Lin N, Chen Y, Kim Y. Compression and aggregation of Bayesian estimates for data intensive computing Knowledge and Information Systems. 33: 191-212. DOI: 10.1007/S10115-011-0459-4  0.444
2011 Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion. Proceedings of the National Academy of Sciences of the United States of America. 108: E1128-36. PMID 22065754 DOI: 10.1073/Pnas.1110574108  0.394
2011 Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, ... Xi R, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725  0.31
2011 Lin N, Xi R. Aggregated estimating equation estimation Statistics and Its Interface. 4: 73-83. DOI: 10.4310/Sii.2011.V4.N1.A8  0.426
2010 Xi R, Kim TM, Park PJ. Detecting structural variations in the human genome using next generation sequencing. Briefings in Functional Genomics. 9: 405-15. PMID 21216738 DOI: 10.1093/Bfgp/Elq025  0.349
2010 Kim TM, Luquette LJ, Xi R, Park PJ. rSW-seq: algorithm for detection of copy number alterations in deep sequencing data. Bmc Bioinformatics. 11: 432. PMID 20718989 DOI: 10.1186/1471-2105-11-432  0.396
2010 Li Q, Xi R, Lin N. Bayesian regularized quantile regression Bayesian Analysis. 5: 533-556. DOI: 10.1214/10-Ba521  0.423
2010 Xi R, Luquette J, Hadjipanayis A, Kim T, Park PJ. BIC-seq: a fast algorithm for detection of copy number alterations based on high-throughput sequencing data Genome Biology. 11: 1-1. DOI: 10.1186/Gb-2010-11-S1-O10  0.393
2010 Lin N, Xi R. Fast surrogates of U-statistics Computational Statistics and Data Analysis. 54: 16-24. DOI: 10.1016/J.Csda.2009.08.009  0.41
2009 Xi R, Lin N, Chen Y. Compression and aggregation for logistic regression analysis in data cubes Ieee Transactions On Knowledge and Data Engineering. 21: 479-492. DOI: 10.1109/Tkde.2008.186  0.447
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