Nadia D. Singh, Ph.D. - Publications

2006 Stanford University, Palo Alto, CA 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Williamson JL, Gyllenhaal EF, Bauernfeind SM, Bautista E, Baumann MJ, Gadek CR, Marra PP, Ricote N, Valqui T, Bozinovic F, Singh ND, Witt CC. Extreme elevational migration spurred cryptic speciation in giant hummingbirds. Proceedings of the National Academy of Sciences of the United States of America. 121: e2313599121. PMID 38739790 DOI: 10.1073/pnas.2313599121  0.318
2022 Winbush A, Singh ND. Variation in fine scale recombination rate in temperature-evolved Drosophila melanogaster populations in response to selection. G3 (Bethesda, Md.). PMID 35961026 DOI: 10.1093/g3journal/jkac208  0.403
2020 Winbush A, Singh ND. Genomics of recombination rate variation in temperature-evolved Drosophila melanogaster populations. Genome Biology and Evolution. PMID 33247719 DOI: 10.1093/gbe/evaa252  0.455
2018 Kohl KP, Singh ND. Experimental evolution across different thermal regimes yields genetic divergence in recombination fraction but no divergence in temperature-associated plastic recombination. Evolution; International Journal of Organic Evolution. PMID 29468654 DOI: 10.1111/Evo.13454  0.327
2017 Ritz KR, Noor MA, Singh ND. Variation in Recombination Rate: Adaptive or Not? Trends in Genetics : Tig. PMID 28359582 DOI: 10.1016/J.Tig.2017.03.003  0.634
2017 Fraimout A, Debat V, Fellous S, Hufbauer RA, Foucaud J, Pudlo P, Marin JM, Price DK, Cattel J, Chen X, Deprá M, François Duyck P, Guedot C, Kenis M, Kimura MT, ... ... Singh N, et al. Deciphering the routes of invasion of Drosophila suzukii by means of ABC random forest. Molecular Biology and Evolution. PMID 28122970 DOI: 10.1093/Molbev/Msx050  0.349
2016 Barsh GS, Bergman CM, Brown CD, Singh ND, Copenhaver GP. Bringing PLOS Genetics Editors to Preprint Servers. Plos Genetics. 12: e1006448. PMID 27906975 DOI: 10.1371/Journal.Pgen.1006448  0.323
2016 Kuzu G, Kaye EG, Chery J, Siggers T, Yang L, Dobson JR, Boor S, Bliss J, Liu W, Jogl G, Rohs R, Singh ND, Bulyk ML, Tolstorukov MY, Larschan E. Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation. Plos Genetics. 12: e1006120. PMID 27414415 DOI: 10.1371/Journal.Pgen.1006120  0.449
2016 Hunter CM, Huang W, Mackay TF, Singh ND. The Genetic Architecture of Natural Variation in Recombination Rate in Drosophila melanogaster. Plos Genetics. 12: e1005951. PMID 27035832 DOI: 10.1371/Journal.Pgen.1005951  0.527
2016 Hunter CM, Robinson MC, Aylor DL, Singh ND. Genetic Background, Maternal Age and Interaction Effects Mediate Rates of Crossing over in Drosophila melanogaster Females. G3 (Bethesda, Md.). PMID 26994290 DOI: 10.1534/G3.116.027631  0.416
2016 Stone EA, Singh ND. Bias-Variance Tradeoffs in Recombination Rate Estimation. Genetics. 202: 857-9. PMID 26869483 DOI: 10.1534/Genetics.115.185561  0.443
2015 Dumont BL, Devlin AA, Truempy DM, Miller JC, Singh ND. No Evidence that Infection Alters Global Recombination Rate in House Mice. Plos One. 10: e0142266. PMID 26550833 DOI: 10.1371/Journal.Pone.0142266  0.357
2015 O'Shea KL, Singh ND. Tetracycline-exposed Drosophila melanogaster males produce fewer offspring but a relative excess of sons. Ecology and Evolution. 5: 3130-9. PMID 26357541 DOI: 10.1002/Ece3.1535  0.305
2014 Adrion JR, Kousathanas A, Pascual M, Burrack HJ, Haddad NM, Bergland AO, Machado H, Sackton TB, Schlenke TA, Watada M, Wegmann D, Singh ND. Drosophila suzukii: the genetic footprint of a recent, worldwide invasion. Molecular Biology and Evolution. 31: 3148-63. PMID 25158796 DOI: 10.1093/Molbev/Msu246  0.7
2014 Singh ND, Koerich LB, Carvalho AB, Clark AG. Positive and purifying selection on the Drosophila Y chromosome. Molecular Biology and Evolution. 31: 2612-23. PMID 24974375 DOI: 10.1093/Molbev/Msu203  0.51
2014 Hunter CM, Singh ND. Do males matter? Testing the effects of male genetic background on female meiotic crossover rates in Drosophila melanogaster. Evolution; International Journal of Organic Evolution. 68: 2718-26. PMID 24889512 DOI: 10.1111/Evo.12455  0.389
2014 Robinson MC, Stone EA, Singh ND. Population genomic analysis reveals no evidence for GC-biased gene conversion in Drosophila melanogaster. Molecular Biology and Evolution. 31: 425-33. PMID 24214536 DOI: 10.1093/Molbev/Mst220  0.453
2013 Singh ND, Stone EA, Aquadro CF, Clark AG. Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome. Genetics. 194: 375-87. PMID 23410829 DOI: 10.1534/Genetics.112.146746  0.683
2013 Singh ND, Jensen JD, Clark AG, Aquadro CF. Inferences of demography and selection in an African population of Drosophila melanogaster. Genetics. 193: 215-28. PMID 23105013 DOI: 10.1534/Genetics.112.145318  0.708
2012 Singh ND. Classical genetics meets next-generation sequencing: uncovering a genome-wide recombination map in Drosophila melanogaster. Plos Genetics. 8: e1003024. PMID 23071461 DOI: 10.1371/Journal.Pgen.1003024  0.564
2012 Pan IC, Liao DC, Wu FH, Daniell H, Singh ND, Chang C, Shih MC, Chan MT, Lin CS. Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. Plos One. 7: e34738. PMID 22496851 DOI: 10.1371/Journal.Pone.0034738  0.347
2012 Connallon T, Singh ND, Clark AG. Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution. Molecular Biology and Evolution. 29: 1933-42. PMID 22319138 DOI: 10.1093/Molbev/Mss057  0.456
2012 Singh ND, Shaw KL. On the scent of pleiotropy. Proceedings of the National Academy of Sciences of the United States of America. 109: 5-6. PMID 22198765 DOI: 10.1073/Pnas.1118531109  0.317
2010 Fiston-Lavier AS, Singh ND, Lipatov M, Petrov DA. Drosophila melanogaster recombination rate calculator. Gene. 463: 18-20. PMID 20452408 DOI: 10.1016/J.Gene.2010.04.015  0.749
2009 DuMont VL, Singh ND, Wright MH, Aquadro CF. Locus-specific decoupling of base composition evolution at synonymous sites and introns along the Drosophila melanogaster and Drosophila sechellia lineages. Genome Biology and Evolution. 1: 67-74. PMID 20333178 DOI: 10.1093/Gbe/Evp008  0.642
2009 Nishant KT, Singh ND, Alani E. Genomic mutation rates: what high-throughput methods can tell us. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 912-20. PMID 19644920 DOI: 10.1002/Bies.200900017  0.421
2009 Singh ND, Aquadro CF, Clark AG. Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster. Journal of Molecular Evolution. 69: 42-53. PMID 19504037 DOI: 10.1007/S00239-009-9250-5  0.642
2009 Singh ND, Arndt PF, Clark AG, Aquadro CF. Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila. Molecular Biology and Evolution. 26: 1591-605. PMID 19351792 DOI: 10.1093/Molbev/Msp071  0.673
2009 Singh ND, Larracuente AM, Sackton TB, Clark AG. Comparative genomics on the drosophila phylogenetic tree Annual Review of Ecology, Evolution, and Systematics. 40: 459-480. DOI: 10.1146/Annurev.Ecolsys.110308.120214  0.487
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/J.Tig.2007.12.001  0.574
2008 Singh ND, Larracuente AM, Clark AG. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution. 25: 454-67. PMID 18083702 DOI: 10.1093/Molbev/Msm275  0.541
2007 Singh ND, Petrov DA. Evolution of gene function on the X chromosome versus the autosomes. Genome Dynamics. 3: 101-18. PMID 18753787 DOI: 10.1159/000107606  0.58
2007 Singh ND, Bauer DuMont VL, Hubisz MJ, Nielsen R, Aquadro CF. Patterns of mutation and selection at synonymous sites in Drosophila. Molecular Biology and Evolution. 24: 2687-97. PMID 18000010 DOI: 10.1093/Molbev/Msm196  0.63
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.735
2007 Singh ND, Macpherson JM, Jensen JD, Petrov DA. Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster. Bmc Evolutionary Biology. 7: 202. PMID 17961244 DOI: 10.1186/1471-2148-7-202  0.704
2006 Singh ND, Arndt PF, Petrov DA. Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences. Bmc Biology. 4: 37. PMID 17049096 DOI: 10.1186/1741-7007-4-37  0.573
2006 Bausher MG, Singh ND, Lee SB, Jansen RK, Daniell H. The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms. Bmc Plant Biology. 6: 21. PMID 17010212 DOI: 10.1186/1471-2229-6-21  0.341
2005 Singh ND, Davis JC, Petrov DA. Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. Journal of Molecular Evolution. 61: 315-24. PMID 16044248 DOI: 10.1007/S00239-004-0287-1  0.7
2005 Singh ND, Davis JC, Petrov DA. X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics. 171: 145-55. PMID 15965246 DOI: 10.1534/Genetics.105.043497  0.687
2005 Singh ND, Arndt PF, Petrov DA. Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. Genetics. 169: 709-22. PMID 15520267 DOI: 10.1534/Genetics.104.032250  0.627
2004 Singh ND, Petrov DA. Rapid sequence turnover at an intergenic locus in Drosophila. Molecular Biology and Evolution. 21: 670-80. PMID 14739245 DOI: 10.1093/Molbev/Msh060  0.595
2003 Seielstad M, Yuldasheva N, Singh N, Underhill P, Oefner P, Shen P, Wells RS. A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas American Journal of Human Genetics. 73: 700-705. PMID 12929085 DOI: 10.1086/377589  0.376
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