Sean B. Carroll - Related publications

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41 most relevant papers in past 60 days:
Year Citation  Score
2021 Cheng C, Kirkpatrick M. Molecular evolution and the decline of purifying selection with age. Nature Communications. 12: 2657. PMID 33976227 DOI: 10.1038/s41467-021-22981-9   
2021 Wang P, Yan Z, Zong X, Yan Q, Zhang J. Genome-Wide Analysis and Expression Profiles of the Dof Family in under Temperature, Salt and ABA Treatment. Plants (Basel, Switzerland). 10. PMID 33922432 DOI: 10.3390/plants10050850   
2021 Wang JM, Woodruff AL, Dunn MJ, Fillinger RJ, Bennett RJ, Anderson MZ. Intraspecies Transcriptional Profiling Reveals Key Regulators of Candida albicans Pathogenic Traits. Mbio. 12. PMID 33879584 DOI: 10.1128/mBio.00586-21   
2021 Panigrahi A, O'Malley BW. Mechanisms of enhancer action: the known and the unknown. Genome Biology. 22: 108. PMID 33858480 DOI: 10.1186/s13059-021-02322-1   
2021 Ing-Simmons E, Vaid R, Bing XY, Levine M, Mannervik M, Vaquerizas JM. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nature Genetics. 53: 487-499. PMID 33795866 DOI: 10.1038/s41588-021-00799-x   
2021 Yeung TK, Lau HW, Ma HT, Poon RYC. One-step multiplex toolkit for efficient generation of conditional gene silencing human cell lines. Molecular Biology of the Cell. mbcE21020051. PMID 33979199 DOI: 10.1091/mbc.E21-02-0051   
2021 Golicz AA, Allu AD, Li W, Lohani N, Singh MB, Bhalla PL. A dynamic intron retention program regulates the expression of several hundred genes during pollen meiosis. Plant Reproduction. PMID 34019149 DOI: 10.1007/s00497-021-00411-6   
2021 Rahman SR, Terranova T, Tian L, Hines HM. Developmental transcriptomics reveals a gene network driving mimetic color variation in a bumble bee. Genome Biology and Evolution. PMID 33881508 DOI: 10.1093/gbe/evab080   
2021 Dan Y, Niu Y, Wang C, Yan M, Liao W. Genome-wide identification and expression analysis of the trehalose-6-phosphate synthase () gene family in cucumber ( L.). Peerj. 9: e11398. PMID 33987038 DOI: 10.7717/peerj.11398   
2021 Anreiter I, Allen AM, Vasquez OE, To L, Douglas SJ, Alvarez JV, Ewer J, Sokolowski MB. The gene plays a vital role at the start of metamorphosis for subsequent adult emergence. Journal of Neurogenetics. 1-13. PMID 33944658 DOI: 10.1080/01677063.2021.1914608   
2021 Patel YD, Brown AJ, Zhu J, Rosignoli G, Gibson SJ, Hatton D, James DC. Control of Multigene Expression Stoichiometry in Mammalian Cells Using Synthetic Promoters. Acs Synthetic Biology. PMID 33939428 DOI: 10.1021/acssynbio.0c00643   
2021 Zhu W, Zhang M, Li J, Zhao H, Ge W, Zhang K. Identification and Analysis of Family in . Evolutionary Bioinformatics Online. 17: 1176934321994127. PMID 33953533 DOI: 10.1177/1176934321994127   
2021 Zhao D, Zheng C, Shi F, Xu Y, Zong S, Tao J. Expression analysis of genes related to cold tolerance in . Peerj. 9: e10864. PMID 33854828 DOI: 10.7717/peerj.10864   
2021 Wang H, Chen JG, Chang Y. Identification, Expression, and Interaction Analysis of Ovate Family Proteins in Reveals a Role of PtOFP1 Regulating Drought Stress Response. Frontiers in Plant Science. 12: 650109. PMID 33959141 DOI: 10.3389/fpls.2021.650109   
2021 Khan I, Khan S, Zhang Y, Zhou J. Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). Planta. 253: 101. PMID 33856565 DOI: 10.1007/s00425-021-03627-y   
2021 Lohani N, Babaei S, Singh MB, Bhalla PL. Genome-Wide Identification and Comparative Analysis of Gene Family in . Plants (Basel, Switzerland). 10. PMID 33916912 DOI: 10.3390/plants10040709   
2021 Xu J, Liu H, Lan Y, Jiang R. -Repression of Expression Affects -Mediated Gene Expression in Palate Development. Frontiers in Cell and Developmental Biology. 9: 665109. PMID 33898467 DOI: 10.3389/fcell.2021.665109   
2021 Qu X, Wu S, Gao J, Qin Z, Zhou Z, Liu J. Weighted gene co expression network analysis (WGCNA) with key pathways and hub-genes related to micro RNAs in ischemic stroke. Iet Systems Biology. 15: 93-100. PMID 33880887 DOI: 10.1049/syb2.12016   
2021 Orsi RH, Chaturongakul S, Oliver HF, Ponnala L, Gaballa A, Wiedmann M. Alternative σ Factors Regulate Overlapping as Well as Distinct Stress Response and Metabolic Functions in under Stationary Phase Stress Condition. Pathogens (Basel, Switzerland). 10. PMID 33915780 DOI: 10.3390/pathogens10040411   
2021 Gomes SC, Ferreira MR, Tavares AF, Silva IN, Becker JD, Moreira LM. A histone-like nucleoid structuring protein regulates several virulence traits in . Applied and Environmental Microbiology. PMID 33931418 DOI: 10.1128/AEM.00369-21   
2021 Wang Y, Liu A. Genomic Characterization and Expression Analysis of the SnRK Family Genes in Kimura et Migo (Orchidaceae). Plants (Basel, Switzerland). 10. PMID 33802577 DOI: 10.3390/plants10030479   
2021 Wu C, Twort VG, Newcomb RD, Buckley TR. Divergent gene expression following duplication of meiotic genes in the stick insect Clitarchus hookeri. Genome Biology and Evolution. PMID 33885769 DOI: 10.1093/gbe/evab060   
2021 Hossain SMM, Halsana AA, Khatun L, Ray S, Mukhopadhyay A. Discovering key transcriptomic regulators in pancreatic ductal adenocarcinoma using Dirichlet process Gaussian mixture model. Scientific Reports. 11: 7853. PMID 33846515 DOI: 10.1038/s41598-021-87234-7   
2021 Jia NY, Liu XZ, Zhang Z, Zhang H. Weighted Gene Co-expression Network Analysis Reveals Different Immunity but Shared Renal Pathology Between IgA Nephropathy and Lupus Nephritis. Frontiers in Genetics. 12: 634171. PMID 33854525 DOI: 10.3389/fgene.2021.634171   
2021 Akinci E, Hamilton MC, Khowpinitchai B, Sherwood RI. Using CRISPR to understand and manipulate gene regulation. Development (Cambridge, England). 148. PMID 33913466 DOI: 10.1242/dev.182667   
2021 Zhang X, Wang Z, Zeng Z, Shen N, Wang B, Zhang Y, Shen H, Lu W, Wei R, Ma W, Wang C. Bioinformatic analysis identifying FGF1 gene as a new prognostic indicator in clear cell Renal Cell Carcinoma. Cancer Cell International. 21: 222. PMID 33865387 DOI: 10.1186/s12935-021-01917-9   
2021 Li Q, Cao M, Fu Q, Yang N, Yan X, Song L, Li C. Complement genes in black rockfish (Sebastods schlegelii): genome-wide identification, evolution and their potential functions in response to Vibrio anguillarum infection. Fish & Shellfish Immunology. PMID 33930548 DOI: 10.1016/j.fsi.2021.04.020   
2021 Miller HE, Bishop AJR. Correlation AnalyzeR: functional predictions from gene co-expression correlations. Bmc Bioinformatics. 22: 206. PMID 33879054 DOI: 10.1186/s12859-021-04130-7   
2021 Linardić M, Braybrook SA. Identification and selection of optimal reference genes for qPCR-based gene expression analysis in Fucus distichus under various abiotic stresses. Plos One. 16: e0233249. PMID 33909633 DOI: 10.1371/journal.pone.0233249   
2021 Farnsworth DR, Posner M, Miller AC. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Experimental Eye Research. 206: 108535. PMID 33705730 DOI: 10.1016/j.exer.2021.108535   
2021 Hua L, Stevenson SR, Reyna-Llorens I, Xiong H, Kopriva S, Hibberd JM. The bundle sheath of rice is conditioned to play an active role in water transport as well as sulfur assimilation and jasmonic acid synthesis. The Plant Journal : For Cell and Molecular Biology. PMID 33901336 DOI: 10.1111/tpj.15292   
2021 Wuelling M, Neu C, Thiesen AM, Kitanovski S, Cao Y, Lange A, Westendorf AM, Hoffmann D, Vortkamp A. Epigenetic Mechanisms Mediating Cell State Transitions in Chondrocytes. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 33534175 DOI: 10.1002/jbmr.4263   
2021 Li P, Li Y, Ma L. Potential role of chimeric genes in pathway-related gene co-expression modules. World Journal of Surgical Oncology. 19: 149. PMID 33980272 DOI: 10.1186/s12957-021-02248-9   
2021 Gao Y, Kim JH, Jeong IH, Clark JM, Lee SH. Transcriptomic identification and characterization of genes commonly responding to sublethal concentrations of six different insecticides in the common fruit fly, Drosophila melanogaster. Pesticide Biochemistry and Physiology. 175: 104852. PMID 33993970 DOI: 10.1016/j.pestbp.2021.104852   
2021 Kim T, Weinberg B, Wong W, Lu TK. Scalable recombinase-based gene expression cascades. Nature Communications. 12: 2711. PMID 33976199 DOI: 10.1038/s41467-021-22978-4   
2021 Simmons A, Palecek SP. Rational, unbiased selection of reference genes for pluripotent stem cell-derived cardiomyocytes. Tissue Engineering. Part C, Methods. PMID 33843289 DOI: 10.1089/ten.TEC.2021.0023   
2021 Steinauer N, Zhang K, Guo C, Zhang J. Computational modeling of gene-specific transcriptional repression, activation and chromatin interactions in leukemogenesis by LASSO-regularized logistic regression. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33961561 DOI: 10.1109/TCBB.2021.3078128   
2021 Liu F, Li H, Wu J, Wang B, Tian N, Liu J, Sun X, Wu H, Huang Y, Lü P, Cheng C. Genome-wide identification and expression pattern analysis of lipoxygenase gene family in banana. Scientific Reports. 11: 9948. PMID 33976263 DOI: 10.1038/s41598-021-89211-6   
2021 Shew CJ, Carmona-Mora P, Soto DC, Mastoras M, Roberts E, Rosas J, Jagannathan D, Kaya G, O'Geene H, Dennis MY. Diverse molecular mechanisms contribute to differential expression of human duplicated genes. Molecular Biology and Evolution. PMID 34009325 DOI: 10.1093/molbev/msab131   
2021 Yang Y, Cai Y, Zhang Y, Yi X, Xu Z. Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression Profiles. Frontiers in Molecular Biosciences. 8: 628546. PMID 33996893 DOI: 10.3389/fmolb.2021.628546   
2021 Liu Y, Li D, Yang N, Zhu X, Han K, Gu R, Bai J, Wang A, Zhang Y. Genome-Wide Identification and Analysis of CC-NBS-LRR Family in Response to Downy Mildew and Black Rot in Chinese Cabbage. International Journal of Molecular Sciences. 22. PMID 33924035 DOI: 10.3390/ijms22084266