Kami Ahmad - Publications

Affiliations: 
Harvard Medical School, Boston, MA, United States 
Area:
histone variants, heterochromatin

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kaya-Okur HS, Janssens DH, Henikoff JG, Ahmad K, Henikoff S. Efficient low-cost chromatin profiling with CUT&Tag. Nature Protocols. PMID 32913232 DOI: 10.1038/s41596-020-0373-x  1
2020 Sarthy JF, Meers MP, Janssens DH, Henikoff JG, Feldman H, Paddison PJ, Lockwood CM, Vitanza NA, Olson JM, Ahmad K, Henikoff S. Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones. Elife. 9. PMID 32902381 DOI: 10.7554/eLife.61090  1
2020 Henikoff S, Ahmad K. Evolution: Heterochromatin Diversity in Early-Branching Land Plants. Current Biology : Cb. 30: R161-R163. PMID 32097641 DOI: 10.1016/j.cub.2019.12.044  1
2019 Henikoff S, Ahmad K. Nucleosomes remember where they were. Proceedings of the National Academy of Sciences of the United States of America. PMID 31511423 DOI: 10.1073/pnas.1914581116  1
2019 Kaya-Okur HS, Wu SJ, Codomo CA, Pledger ES, Bryson TD, Henikoff JG, Ahmad K, Henikoff S. CUT&Tag for efficient epigenomic profiling of small samples and single cells. Nature Communications. 10: 1930. PMID 31036827 DOI: 10.1038/s41467-019-09982-5  1
2019 Sarthy JF, Henikoff S, Ahmad K. Chromatin Bottlenecks in Cancer. Trends in Cancer. 5: 183-194. PMID 30898265 DOI: 10.1016/j.trecan.2019.01.003  1
2018 Janssens DH, Wu SJ, Sarthy JF, Meers MP, Myers CH, Olson JM, Ahmad K, Henikoff S. Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs. Epigenetics & Chromatin. 11: 74. PMID 30577869 DOI: 10.1186/s13072-018-0243-8  1
2018 Ahmad K, Henikoff S. No strand left behind. Science (New York, N.Y.). 361: 1311-1312. PMID 30262484 DOI: 10.1126/science.aav0871  1
2017 Ramachandran S, Ahmad K, Henikoff S. Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates. Molecular Cell. PMID 29225036 DOI: 10.1016/j.molcel.2017.11.015  1
2017 Kasinathan B, Ahmad K, Malik HS. Waddington Redux: De Novo Mutations Underlie the Genetic Assimilation of Stress-Induced Phenocopies in Drosophila melanogaster. Genetics. 207: 49-51. PMID 28874454 DOI: 10.1534/genetics.117.205039  1
2017 Ramachandran S, Ahmad K, Henikoff S. Capitalizing on disaster: Establishing chromatin specificity behind the replication fork. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28133760 DOI: 10.1002/bies.201600150  1
2015 Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K. Mapping regulatory factors by immunoprecipitation from native chromatin. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 110: 21.31.1-21.31.25. PMID 25827087 DOI: 10.1002/0471142727.mb2131s110  1
2015 Ganjoo S, Ahmad K, Qureshi UA, Mir ZH. Clinical Epidemiology of SIRS and Sepsis in Newly Admitted Children. Indian Journal of Pediatrics. 82: 698-702. PMID 25429997 DOI: 10.1007/s12098-014-1618-x  0.01
2014 Orsi GA, Kasinathan S, Hughes KT, Saminadin-Peter S, Henikoff S, Ahmad K. High-resolution mapping defines the cooperative architecture of Polycomb response elements. Genome Research. 24: 809-20. PMID 24668908 DOI: 10.1101/gr.163642.113  1
2014 Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nature Methods. 11: 203-9. PMID 24336359 DOI: 10.1038/nmeth.2766  1
2012 Schneiderman JI, Orsi GA, Hughes KT, Loppin B, Ahmad K. Nucleosome-depleted chromatin gaps recruit assembly factors for the H3.3 histone variant. Proceedings of the National Academy of Sciences of the United States of America. 109: 19721-6. PMID 23150573 DOI: 10.1073/pnas.1206629109  1
2012 Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7  1
2012 Greil F, Ahmad K. Nucleolar dominance of the Y chromosome in Drosophila melanogaster. Genetics. 191: 1119-28. PMID 22649076 DOI: 10.1534/genetics.112.141242  1
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Ahmad K, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/science.1198374  1
2010 Schneiderman JI, Goldstein S, Ahmad K. Perturbation analysis of heterochromatin-mediated gene silencing and somatic inheritance. Plos Genetics. 6: e1001095. PMID 20838586 DOI: 10.1371/journal.pgen.1001095  1
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/journal.pgen.1000814  1
2009 Sakai A, Schwartz BE, Goldstein S, Ahmad K. Transcriptional and developmental functions of the H3.3 histone variant in Drosophila. Current Biology : Cb. 19: 1816-20. PMID 19781938 DOI: 10.1016/j.cub.2009.09.021  1
2009 Schneiderman JI, Sakai A, Goldstein S, Ahmad K. The XNP remodeler targets dynamic chromatin in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 106: 14472-7. PMID 19706533 DOI: 10.1073/pnas.0905816106  1
2009 Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Research. 19: 460-9. PMID 19088306 DOI: 10.1101/gr.087619.108  1
2007 Rando OJ, Ahmad K. Rules and regulation in the primary structure of chromatin. Current Opinion in Cell Biology. 19: 250-6. PMID 17466507 DOI: 10.1016/j.ceb.2007.04.006  1
2006 Schwartz BE, Ahmad K. 2. Chromatin assembly with H3 histones: full throttle down multiple pathways. Current Topics in Developmental Biology. 74: 31-55. PMID 16860664 DOI: 10.1016/S0070-2153(06)74002-9  1
2005 Henikoff S, Ahmad K. Assembly of variant histones into chromatin. Annual Review of Cell and Developmental Biology. 21: 133-53. PMID 16212490 DOI: 10.1146/annurev.cellbio.21.012704.133518  1
2005 Schwartz BE, Ahmad K. Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes & Development. 19: 804-14. PMID 15774717 DOI: 10.1101/gad.1259805  1
2004 Henikoff S, McKittrick E, Ahmad K. Epigenetics, histone H3 variants, and the inheritance of chromatin states. Cold Spring Harbor Symposia On Quantitative Biology. 69: 235-43. PMID 16117654 DOI: 10.1101/sqb.2004.69.235  1
2004 Gaddis NC, Sheehy AM, Ahmad KM, Swanson CM, Bishop KN, Beer BE, Marx PA, Gao F, Bibollet-Ruche F, Hahn BH, Malim MH. Further investigation of simian immunodeficiency virus Vif function in human cells. Journal of Virology. 78: 12041-6. PMID 15479843 DOI: 10.1128/JVI.78.21.12041-12046.2004  1
2004 Ahmad K. The end in sight. Molecular Cell. 15: 494-5. PMID 15327765 DOI: 10.1016/j.molcel.2004.08.012  1
2004 Henikoff S, Furuyama T, Ahmad K. Histone variants, nucleosome assembly and epigenetic inheritance. Trends in Genetics : Tig. 20: 320-6. PMID 15219397 DOI: 10.1016/j.tig.2004.05.004  1
2004 Swanson CM, Puffer BA, Ahmad KM, Doms RW, Malim MH. Retroviral mRNA nuclear export elements regulate protein function and virion assembly. The Embo Journal. 23: 2632-40. PMID 15201866 DOI: 10.1038/sj.emboj.7600270  1
2004 McKittrick E, Gafken PR, Ahmad K, Henikoff S. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proceedings of the National Academy of Sciences of the United States of America. 101: 1525-30. PMID 14732680 DOI: 10.1073/pnas.0308092100  1
2004 Ahmad K, Golic KG. Analyzing chromosome function by high frequency formation of dicentric chromosomes in vivo. Methods in Molecular Biology (Clifton, N.J.). 247: 333-41. PMID 14707357  1
2003 Vermaak D, Ahmad K, Henikoff S. Maintenance of chromatin states: an open-and-shut case. Current Opinion in Cell Biology. 15: 266-74. PMID 12787767 DOI: 10.1016/S0955-0674(03)00043-7  1
2002 Ahmad K, Henikoff S. Epigenetic consequences of nucleosome dynamics. Cell. 111: 281-4. PMID 12419239 DOI: 10.1016/S0092-8674(02)01081-4  1
2002 Ahmad K, Henikoff S. Histone H3 variants specify modes of chromatin assembly. Proceedings of the National Academy of Sciences of the United States of America. 99: 16477-84. PMID 12177448 DOI: 10.1073/pnas.172403699  1
2002 Ahmad K, Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Molecular Cell. 9: 1191-200. PMID 12086617 DOI: 10.1016/S1097-2765(02)00542-7  1
2002 Ahmad K, Henikoff S. The synthesis and crystal structure of {N-dodecyl-N-pyridin-2-ylmethylene]amine} dichloro palladium and its preliminary evaluation as a catalyst for ethylene polymerization Inorganic Chemistry Communications. 5: 724-726. DOI: 10.1016/S1387-7003(02)00551-8  1
2001 Borodin PM, Henikoff S, Ahmad K, Malik HS. Speciation and centromere evolution [3] (multiple letters) Science. 294: 2478-2480. PMID 11770517 DOI: 10.1126/science.294.5551.2478  1
2001 Henikoff S, Ahmad K, Malik HS. The centromere paradox: stable inheritance with rapidly evolving DNA. Science (New York, N.Y.). 293: 1098-102. PMID 11498581 DOI: 10.1126/science.1062939  1
2001 Ahmad K, Henikoff S. Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila. Cell. 104: 839-47. PMID 11290322 DOI: 10.1016/S0092-8674(01)00281-1  1
2001 Ahmad K, Henikoff S. Centromeres are specialized replication domains in heterochromatin. The Journal of Cell Biology. 153: 101-10. PMID 11285277 DOI: 10.1083/jcb.153.1.101  1
2000 Henikoff S, Ahmad K, Platero JS, van Steensel B. Heterochromatic deposition of centromeric histone H3-like proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 716-21. PMID 10639145 DOI: 10.1073/pnas.97.2.716  1
1999 Platero JS, Ahmad K, Henikoff S. A distal heterochromatic block displays centromeric activity when detached from a natural centromere. Molecular Cell. 4: 995-1004. PMID 10635324  1
1999 Buchwitz BJ, Ahmad K, Moore LL, Roth MB, Henikoff S. A histone-H3-like protein in C. elegans. Nature. 401: 547-8. PMID 10524621 DOI: 10.1038/44062  1
1999 Ahmad K, Golic KG. Telomere loss in somatic cells of Drosophila causes cell cycle arrest and apoptosis. Genetics. 151: 1041-51. PMID 10049921  1
1998 Ahmad K, Golic KG. The transmission of fragmented chromosomes in Drosophila melanogaster. Genetics. 148: 775-92. PMID 9504924  1
1996 Ahmad K, Golic KG. Somatic reversion of chromosomal position effects in Drosophila melanogaster. Genetics. 144: 657-70. PMID 8889528  1
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