Brian Oliver - Publications


79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Benner L, Castro EA, Whitworth C, Venken KJT, Yang H, Fang J, Oliver B, Cook KR, Lerit DA. Heterochromatin Stabilization Requires the Zinc-Finger Protein Small Ovary. Genetics. PMID 31558581 DOI: 10.1534/genetics.119.302590  0.64
2019 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, ... ... Oliver B, et al. Correction to: DNA copy number evolution in Drosophila cell lines. Genome Biology. 20: 53. PMID 30857560 DOI: 10.1186/s13059-019-1668-5  1
2018 Yang H, Jaime M, Polihronakis M, Kanegawa K, Markow T, Kaneshiro K, Oliver B. Re-annotation of eight genomes. Life Science Alliance. 1: e201800156. PMID 30599046 DOI: 10.26508/lsa.201800156  0.64
2017 Yang H, Basquin D, Pauli D, Oliver B. Drosophila melanogaster positive transcriptional elongation factors regulate metabolic and sex-biased expression in adults. Bmc Genomics. 18: 384. PMID 28521739 DOI: 10.1186/s12864-017-3755-x  1
2016 Vleurinck C, Raub S, Sturgill D, Oliver B, Beye M. Linking Genes and Brain Development of Honeybee Workers: A Whole-Transcriptome Approach. Plos One. 11: e0157980. PMID 27490820 DOI: 10.1371/journal.pone.0157980  0.36
2016 Fear J, Oliver B. Developmental biology: Females have a lot of guts. Nature. 530: 289-90. PMID 26887491 DOI: 10.1038/530289a  1
2016 Lin Y, Golovnina K, Chen ZX, Lee HN, Negron YL, Sultana H, Oliver B, Harbison ST. Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster. Bmc Genomics. 17: 28. PMID 26732976 DOI: 10.1186/s12864-015-2353-z  1
2015 Sun X, Yang H, Sturgill D, Oliver B, Rabinow L, Samson ML. Sxl-Dependent, tra/tra2-Independent Alternative Splicing of the Drosophila melanogaster X-Linked Gene found in neurons. G3 (Bethesda, Md.). PMID 26511498 DOI: 10.1534/g3.115.023721  1
2015 Chen ZX, Oliver B. X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads. G3 (Bethesda, Md.). 5: 1057-63. PMID 25850426 DOI: 10.1534/g3.115.017632  1
2014 Clough E, Jimenez E, Kim YA, Whitworth C, Neville MC, Hempel LU, Pavlou HJ, Chen ZX, Sturgill D, Dale RK, Smith HE, Przytycka TM, Goodwin SF, Van Doren M, Oliver B. Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes. Developmental Cell. 31: 761-73. PMID 25535918 DOI: 10.1016/j.devcel.2014.11.021  0.36
2014 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, ... ... Oliver B, et al. DNA copy number evolution in Drosophila cell lines. Genome Biology. 15: R70. PMID 25262759 DOI: 10.1186/gb-2014-15-8-r70  1
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Oliver B, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/nature13424  1
2014 Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, ... ... Oliver B, et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research. 24: 1209-23. PMID 24985915 DOI: 10.1101/gr.159384.113  0.36
2014 Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, ... ... Oliver B, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 512: 393-9. PMID 24670639 DOI: 10.1038/nature12962  1
2014 Chen ZX, Golovnina K, Sultana H, Kumar S, Oliver B. Transcriptional effects of gene dose reduction. Biology of Sex Differences. 5: 5. PMID 24581086 DOI: 10.1186/2042-6410-5-5  1
2013 Sturgill D, Malone JH, Sun X, Smith HE, Rabinow L, Samson ML, Oliver B. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki). Bmc Bioinformatics. 14: 320. PMID 24209455 DOI: 10.1186/1471-2105-14-320  1
2012 Miguel-Aliaga I, Oliver B, Teleman AA. The flies of Icarus: science with wings in Crete. Embo Reports. 13: 945-7. PMID 23059980 DOI: 10.1038/embor.2012.154  1
2012 Clough E, Oliver B. Genomics of sex determination in Drosophila. Briefings in Functional Genomics. 11: 387-94. PMID 23023665 DOI: 10.1093/bfgp/els019  1
2012 Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B. Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Genome Biology. 13: r28. PMID 22531030 DOI: 10.1186/gb-2012-13-4-r28  1
2011 Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/ng.948  1
2011 Jiang L, Schlesinger F, Davis CA, Zhang Y, Li R, Salit M, Gingeras TR, Oliver B. Synthetic spike-in standards for RNA-seq experiments. Genome Research. 21: 1543-51. PMID 21816910 DOI: 10.1101/gr.121095.111  1
2011 Parisi M, Li R, Oliver B. Lipid profiles of female and male Drosophila. Bmc Research Notes. 4: 198. PMID 21676256 DOI: 10.1186/1756-0500-4-198  1
2011 Malone JH, Oliver B. Microarrays, deep sequencing and the true measure of the transcriptome. Bmc Biology. 9: 34. PMID 21627854 DOI: 10.1186/1741-7007-9-34  1
2011 Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Oliver B, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/nature09715  1
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Oliver B, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/science.1198374  1
2010 Bronstein R, Levkovitz L, Yosef N, Yanku M, Ruppin E, Sharan R, Westphal H, Oliver B, Segal D. Transcriptional regulation by CHIP/LDB complexes. Plos Genetics. 6: e1001063. PMID 20730086 DOI: 10.1371/journal.pgen.1001063  1
2010 Parisi MJ, Gupta V, Sturgill D, Warren JT, Jallon JM, Malone JH, Zhang Y, Gilbert LI, Oliver B. Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila. Bmc Genomics. 11: 346. PMID 20515475 DOI: 10.1186/1471-2164-11-346  1
2010 Zhang Y, Malone JH, Powell SK, Periwal V, Spana E, Macalpine DM, Oliver B. Expression in aneuploid Drosophila S2 cells. Plos Biology. 8: e1000320. PMID 20186269 DOI: 10.1371/journal.pbio.1000320  1
2008 Hempel LU, Kalamegham R, Smith JE, Oliver B. Drosophila germline sex determination: integration of germline autonomous cues and somatic signals. Current Topics in Developmental Biology. 83: 109-50. PMID 19118665 DOI: 10.1016/S0070-2153(08)00404-3  1
2008 Malone JH, Oliver B. The sex chromosome that refused to die. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 409-11. PMID 18404685 DOI: 10.1002/bies.20752  1
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/j.tig.2007.12.001  1
2007 Oliver B. Sex, dose, and equality. Plos Biology. 5: e340. PMID 18162049 DOI: 10.1371/journal.pbio.0050340  1
2007 Sturgill D, Zhang Y, Parisi M, Oliver B. Demasculinization of X chromosomes in the Drosophila genus. Nature. 450: 238-41. PMID 17994090 DOI: 10.1038/nature06330  1
2007 Zhang Y, Sturgill D, Parisi M, Kumar S, Oliver B. Constraint and turnover in sex-biased gene expression in the genus Drosophila. Nature. 450: 233-7. PMID 17994089 DOI: 10.1038/nature06323  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/nature06341  1
2007 Hempel LU, Oliver B. Sex-specific DoublesexM expression in subsets of Drosophila somatic gonad cells Bmc Developmental Biology. 7. PMID 17935627 DOI: 10.1186/1471-213X-7-113  1
2007 Zhang Y, Oliver B. Dosage compensation goes global Current Opinion in Genetics and Development. 17: 113-120. PMID 17307352 DOI: 10.1016/j.gde.2007.02.002  1
2007 Kalamegham R, Sturgill D, Siegfried E, Oliver B. Drosophila mojoless, a retroposed GSK-3, has functionally diverged to acquire an essential role in male fertility Molecular Biology and Evolution. 24: 732-742. PMID 17179138 DOI: 10.1093/molbev/msl201  1
2006 Oliver B. Tiling DNA microarrays for fly genome cartography Nature Genetics. 38: 1101-1102. PMID 17006461 DOI: 10.1038/ng1006-1101  1
2006 Cerrato A, Parisi M, Anna SS, Missirlis F, Guru S, Agarwal S, Sturgill D, Talbot T, Spiegel A, Collins F, Chandrasekharappa S, Marx S, Oliver B. Genetic interactions between Drosophila melanogaster menin and Jun/Fos Developmental Biology. 298: 59-70. PMID 16930585 DOI: 10.1016/j.ydbio.2006.06.013  1
2006 FitzGerald PC, Sturgill D, Shyakhtenko A, Oliver B, Vinson C. Comparative genomics of Drosophila and human core promoters. Genome Biology. 7: R53. PMID 16827941 DOI: 10.1186/gb-2006-7-7-r53  1
2006 Beller M, Oliver B. One hundred years of high-throughput Drosophila research Chromosome Research. 14: 349-362. PMID 16821132 DOI: 10.1007/s10577-006-1065-2  1
2006 Gupta V, Parisi M, Sturgill D, Nuttall R, Doctolero M, Dudko OK, Malley JD, Eastman PS, Oliver B. Global analysis of X-chromosome dosage compensation. Journal of Biology. 5: 3. PMID 16507155 DOI: 10.1186/jbiol30  1
2005 Agarwal SK, Kennedy PA, Scacheri PC, Novotny EA, Hickman AB, Cerrato A, Rice TS, Moore JB, Rao S, Ji Y, Mateo C, Libutti SK, Oliver B, Chandrasekharappa SC, Burns AL, et al. Menin molecular interactions: insights into normal functions and tumorigenesis. Hormone and Metabolic Research = Hormon- Und Stoffwechselforschung = Hormones Et MéTabolisme. 37: 369-74. PMID 16001329 DOI: 10.1055/s-2005-870139  1
2005 Oliver B, Misteli T. A non-random walk through the genome Genome Biology. 6. PMID 15833129 DOI: 10.1186/gb-2005-6-4-214  1
2005 Khil PP, Oliver B, Camerini-Otero RD. X for intersection: Retrotransposition both on and off the X chromosome is more frequent Trends in Genetics. 21: 3-7. PMID 15680505 DOI: 10.1016/j.tig.2004.11.005  1
2005 Bielinska B, Lü J, Sturgill D, Oliver B. Core promoter sequences contribute to ovo-B regulation in the Drosophila melanogaster germline. Genetics. 169: 161-72. PMID 15371353 DOI: 10.1534/genetics.104.033118  1
2004 Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lü J, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B. A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. Genome Biology. 5: R40. PMID 15186491 DOI: 10.1186/gb-2004-5-6-r40  1
2004 Agarwal SK, Lee Burns A, Sukhodolets KE, Kennedy PA, Obungu VH, Hickman AB, Mullendore ME, Whitten I, Skarulis MC, Simonds WF, Mateo C, Crabtree JS, Scacheri PC, Ji Y, Novotny EA, ... ... Oliver B, et al. Molecular pathology of the MEN1 gene. Annals of the New York Academy of Sciences. 1014: 189-98. PMID 15153434 DOI: 10.1196/annals.1294.020  1
2004 Oliver B, Parisi M. Battle of the Xs Bioessays. 26: 543-548. PMID 15112234 DOI: 10.1002/bies.20034  1
2004 Johnston R, Wang B, Nuttall R, Doctolero M, Edwards P, Lü J, Vainer M, Yue H, Wang X, Minor J, Chan C, Lash A, Goralski T, Parisi M, Oliver B, et al. FlyGEM, a full transcriptome array platform for the Drosophila community. Genome Biology. 5: R19. PMID 15003122 DOI: 10.1186/gb-2004-5-3-r19  1
2004 Oliver B, Leblanc B. How many genes in a genome? Genome Biology. 5. PMID 14709168 DOI: 10.1186/gb-2003-5-1-204  1
2003 Gupta V, Oliver B. Drosophila microarray platforms. Briefings in Functional Genomics & Proteomics. 2: 97-105. PMID 15239930 DOI: 10.1093/bfgp/2.2.97  1
2003 Oliver B. Fast males Heredity. 91: 535-536. PMID 14571260 DOI: 10.1038/sj.hdy.6800371  1
2003 Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science (New York, N.Y.). 299: 697-700. PMID 12511656 DOI: 10.1126/science.1079190  1
2002 Oliver B. Genetic control of germline sexual dimorphism in Drosophila International Review of Cytology. 219: 1-60. PMID 12211627 DOI: 10.1016/S0074-7696(02)19010-3  1
2002 Oliver B. Drosophila melanogaster, two years into the post-genomic era Genome Biology. 3: 4021.1-4021.2. PMID 12184804  1
2002 Oliver B, Parisi M, Clark D. Gene expression neighborhoods Journal of Biology. 1. PMID 12144705  1
2002 Oliver B. Fly factory Genome Research. 12: 1017-1018. PMID 12097337 DOI: 10.1101/gr.295602  1
2002 Miura S, Gan JW, Brzostowski J, Parisi MJ, Schultz CJ, Londos C, Oliver B, Kimmel AR. Functional conservation for lipid storage droplet association among perilipin, ADRP, and TIP47 (PAT)-related proteins in mammals, Drosophila, and Dictyostelium Journal of Biological Chemistry. 277: 32253-32257. PMID 12077142 DOI: 10.1074/jbc.M204410200  1
2002 Andrews J, Oliver B. Sex determination signals control ovo-B transcription in Drosophila melanogaster germ cells. Genetics. 160: 537-45. PMID 11861560  1
2001 Churchill GA, Oliver B. Sex, flies and microarrays Nature Genetics. 29: 355-356. PMID 11726914 DOI: 10.1038/ng1201-355  1
2001 Lü J, Oliver B. Drosophila OVO regulates ovarian tumor transcription by binding unusually near the transcription start site. Development (Cambridge, England). 128: 1671-86. PMID 11290304  1
2001 Guru SC, Prasad NB, Shin EJ, Hemavathy K, Lu J, Ip YT, Agarwal SK, Marx SJ, Spiegel AM, Collins FS, Oliver B, Chandrasekharappa SC. Characterization of a MEN1 ortholog from Drosophila melanogaster. Gene. 263: 31-8. PMID 11223240 DOI: 10.1016/S0378-1119(00)00562-X  1
2000 Andrews J, Bouffard GG, Cheadle C, Lü J, Becker KG, Oliver B. Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. Genome Research. 10: 2030-43. PMID 11116097 DOI: 10.1101/gr.10.12.2030  1
2000 Andrews J, Garcia-Estefania D, Delon I, Lü J, Mével-Ninio M, Spierer A, Payre F, Pauli D, Oliver B. OVO transcription factors function antagonistically in the Drosophila female germline. Development (Cambridge, England). 127: 881-92. PMID 10648246  1
1998 Oliver B, Pauli D. Suppression of distinct ovo phenotypes in the Drosophila female germline by maleless- and Sex-lethal. Developmental Genetics. 23: 335-46. PMID 9883585 DOI: 10.1002/(SICI)1520-6408(1998)23:4<335::AID-DVG8>3.0.CO;2-M  1
1998 Lü J, Andrews J, Pauli D, Oliver B. Drosophila OVO zinc-finger protein regulates ovo and ovarian tumor target promoters. Development Genes and Evolution. 208: 213-22. PMID 9634487 DOI: 10.1007/s004270050175  1
1998 Meyer V, Oliver B, Pauli D. Multiple developmental requirements of noisette, the Drosophila homolog of the U2 snRNP-associated polypeptide SP3a60. Molecular and Cellular Biology. 18: 1835-43. PMID 9528755  1
1998 Andrews J, Levenson I, Oliver B. New AUG initiation codons in a long 5' UTR create four dominant negative alleles of the Drosophila C2H2 zinc-finger gene ovo. Development Genes and Evolution. 207: 482-7. PMID 9510543 DOI: 10.1007/s004270050139  1
1995 Pauli D, Oliver B, Mahowald AP. Identification of regions interacting with ovoD mutations: potential new genes involved in germline sex determination or differentiation in Drosophila melanogaster. Genetics. 139: 713-32. PMID 7713427  1
1994 Wei G, Oliver B, Pauli D, Mahowald AP. Evidence for sex transformation of germline cells in ovarian tumor mutants of Drosophila. Developmental Biology. 161: 318-20. PMID 8293883 DOI: 10.1006/dbio.1994.1032  1
1994 Oliver B, Singer J, Laget V, Pennetta G, Pauli D. Function of Drosophila ovo+ in germ-line sex determination depends on X-chromosome number. Development (Cambridge, England). 120: 3185-95. PMID 7720561  1
1993 Pauli D, Oliver B, Mahowald AP. The role of the ovarian tumor locus in Drosophila melanogaster germ line sex determination. Development (Cambridge, England). 119: 123-34. PMID 8275850  1
1993 Oliver B, Kim YJ, Baker BS. Sex-lethal, master and slave: a hierarchy of germ-line sex determination in Drosophila. Development (Cambridge, England). 119: 897-908. PMID 8187645  1
1991 Wei G, Oliver B, Mahowald AP. Gonadal dysgenesis reveals sexual dimorphism in the embryonic germline of Drosophila Genetics. 129: 203-210. PMID 1657701  1
1990 Oliver B, Pauli D, Mahowald AP. Genetic evidence that the ovo locus is involved in Drosophila germ line sex determination. Genetics. 125: 535-50. PMID 2116356  1
1988 Oliver B, Perrimon N, Mahowald AP. Genetic evidence that the sans fille locus is involved in Drosophila sex determination Genetics. 120: 159-171. PMID 3220249  1
1987 Oliver B, Perrimon N, Mahowald AP. The ovo locus is required for sex-specific germ line maintenance in Drosophila Genes & Development. 1: 913-923. PMID 3428601  1
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