John T. Lis - Publications

Molecular Biology & Genetics Cornell University, Ithaca, NY, United States 
transcription and processing of mRNAs

243 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Wang Z, Chivu AG, Choate LA, Rice EJ, Miller DC, Chu T, Chou SP, Kingsley NB, Petersen JL, Finno CJ, Bellone RR, Antczak DF, Lis JT, Danko CG. Prediction of histone post-translational modification patterns based on nascent transcription data. Nature Genetics. PMID 35273399 DOI: 10.1038/s41588-022-01026-x  0.386
2022 Yao L, Liang J, Ozer A, Leung AK, Lis JT, Yu H. A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers. Nature Biotechnology. PMID 35177836 DOI: 10.1038/s41587-022-01211-7  0.418
2021 Lozano R, Booth GT, Omar BY, Li B, Buckler ES, Lis JT, Del Carpio DP, Jannink JL. RNA polymerase mapping in plants identifies intergenic regulatory elements enriched in causal variants. G3 (Bethesda, Md.). PMID 34499719 DOI: 10.1093/g3journal/jkab273  0.433
2021 Vihervaara A, Mahat DB, Himanen SV, Blom MAH, Lis JT, Sistonen L. Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions. Molecular Cell. 81: 1715-1731.e6. PMID 33784494 DOI: 10.1016/j.molcel.2021.03.007  0.452
2021 Wang Y, Chong TH, Unarta IC, Xu X, Suarez GD, Wang J, Lis JT, Huang X, Cheung PP. EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error. Bio-Protocol. 11: e3921. PMID 33732808 DOI: 10.21769/BioProtoc.3921  0.332
2021 Luan J, Xiang G, Gómez-García PA, Tome JM, Zhang Z, Vermunt MW, Zhang H, Huang A, Keller CA, Giardine BM, Zhang Y, Lan Y, Lis JT, Lakadamyali M, Hardison RC, et al. Distinct properties and functions of CTCF revealed by a rapidly inducible degron system. Cell Reports. 34: 108783. PMID 33626344 DOI: 10.1016/j.celrep.2021.108783  0.397
2020 Judd J, Duarte FM, Lis JT. Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription. Genes & Development. PMID 33303640 DOI: 10.1101/gad.341768.120  0.498
2020 Tippens ND, Liang J, Leung AK, Wierbowski SD, Ozer A, Booth JG, Lis JT, Yu H. Transcription imparts architecture, function and logic to enhancer units. Nature Genetics. PMID 32958950 DOI: 10.1038/S41588-020-0686-2  0.429
2020 Ray J, Kruse A, Ozer A, Kajitani T, Johnson R, MacCoss M, Heck M, Lis JT. RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. Nucleic Acids Research. PMID 32609809 DOI: 10.1093/Nar/Gkaa542  0.601
2020 Wan YCE, Liu J, Zhu L, Kang TZE, Zhu X, Lis J, Ishibashi T, Danko CG, Wang X, Chan KM. The H2BG53D oncohistone directly upregulates ANXA3 transcription and enhances cell migration in pancreatic ductal adenocarcinoma. Signal Transduction and Targeted Therapy. 5: 106. PMID 32606294 DOI: 10.1038/S41392-020-00219-2  0.375
2020 Cheung PP, Jiang B, Booth GT, Chong TH, Unarta IC, Wang Y, Suarez GD, Wang J, Lis JT, Huang X. Identifying Transcription Error-Enriched Genomic Loci Using Nuclear Run-on Circular-Sequencing Coupled with Background Error Modeling. Journal of Molecular Biology. PMID 32325070 DOI: 10.1016/J.Jmb.2020.04.011  0.451
2020 Strobel EJ, Lis JT, Lucks JB. Chemical roadblocking of DNA transcription for nascent RNA display. The Journal of Biological Chemistry. PMID 32209658 DOI: 10.1074/Jbc.Ra120.012641  0.849
2020 Narlikar GJ, Lis JT, Darzacq X. Decision letter: Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction Elife. DOI: 10.7554/Elife.55667.Sa1  0.404
2019 Ray J, Munn PR, Vihervaara A, Lewis JJ, Ozer A, Danko CG, Lis JT. Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock. Proceedings of the National Academy of Sciences of the United States of America. PMID 31506350 DOI: 10.1073/Pnas.1901244116  0.697
2019 Lis JT. A 50 year history of technologies that drove discovery in eukaryotic transcription regulation. Nature Structural & Molecular Biology. PMID 31439942 DOI: 10.1038/s41594-019-0288-9  0.453
2019 Wissink EM, Vihervaara A, Tippens ND, Lis JT. Nascent RNA analyses: tracking transcription and its regulation. Nature Reviews. Genetics. PMID 31399713 DOI: 10.1038/s41576-019-0159-6  0.543
2019 Barros de Andrade E Sousa L, Jonkers I, Syx L, Dunkel I, Chaumeil J, Picard C, Foret B, Chen CJ, Lis JT, Heard E, Schulz EG, Marsico A. Kinetics of -induced gene silencing can be predicted from combinations of epigenetic and genomic features. Genome Research. PMID 31175153 DOI: 10.1101/gr.245027.118  0.446
2019 Zhang Z, Chng K, Lingadahalli S, Chen Z, Liu MH, Do HH, Cai S, Rinaldi N, Poh HM, Li G, Sung Y, Heng CL, Core LJ, Tan SK, Ruan XA, ... Lis JT, et al. An AR-ERG transcriptional signature defined by long range chromatin interactomes in prostate cancer cells. Genome Research. PMID 30606742 DOI: 10.1101/Gr.230243.117  0.75
2018 Tome JM, Tippens ND, Lis JT. Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers. Nature Genetics. 50: 1533-1541. PMID 30349116 DOI: 10.1038/s41588-018-0234-5  0.606
2018 Chu T, Rice EJ, Booth GT, Salamanca HH, Wang Z, Core LJ, Longo SL, Corona RJ, Chin LS, Lis JT, Kwak H, Danko CG. Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme. Nature Genetics. PMID 30349114 DOI: 10.1038/S41588-018-0244-3  0.826
2018 Parua PK, Booth GT, Sansó M, Benjamin B, Tanny JC, Lis JT, Fisher RP. A Cdk9-PP1 switch regulates the elongation-termination transition of RNA polymerase II. Nature. PMID 29899453 DOI: 10.1038/s41586-018-0214-z  0.53
2018 Vihervaara A, Duarte FM, Lis JT. Molecular mechanisms driving transcriptional stress responses. Nature Reviews. Genetics. PMID 29556092 DOI: 10.1038/s41576-018-0001-6  0.525
2018 Tippens ND, Vihervaara A, Lis JT. Enhancer transcription: what, where, when, and why? Genes & Development. 32: 1-3. PMID 29440223 DOI: 10.1101/gad.311605.118  0.503
2018 Booth GT, Parua PK, Sansó M, Fisher RP, Lis JT. Cdk9 regulates a promoter-proximal checkpoint to modulate RNA polymerase II elongation rate in fission yeast. Nature Communications. 9: 543. PMID 29416031 DOI: 10.1038/s41467-018-03006-4  0.56
2018 Danko CG, Choate LA, Marks BA, Rice EJ, Wang Z, Chu T, Martins AL, Dukler N, Coonrod SA, Tait Wojno ED, Lis JT, Kraus WL, Siepel A. Dynamic evolution of regulatory element ensembles in primate CD4+ T cells. Nature Ecology & Evolution. PMID 29379187 DOI: 10.1038/S41559-017-0447-5  0.552
2018 Kushner M, Wang J, Ozer A, Ray J, Lis J, Zipfel W. High-Resolution Locus-Specific Mapping of Chromatin Contacts using Two-Photon Photoactivated DNA Cross-Linking Biophysical Journal. 114: 255a. DOI: 10.1016/J.Bpj.2017.11.1416  0.548
2017 Boija A, Mahat DB, Zare A, Holmqvist PH, Philip P, Meyers DJ, Cole PA, Lis JT, Stenberg P, Mannervik M. CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II. Molecular Cell. PMID 29056321 DOI: 10.1016/J.Molcel.2017.09.031  0.597
2017 Dukler N, Booth GT, Huang YF, Tippens N, Waters CT, Danko CG, Lis JT, Siepel A. Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol. Genome Research. PMID 29025894 DOI: 10.1101/Gr.222935.117  0.529
2017 Vihervaara A, Mahat DB, Guertin MJ, Chu T, Danko CG, Lis JT, Sistonen L. Transcriptional response to stress is pre-wired by promoter and enhancer architecture. Nature Communications. 8: 255. PMID 28811569 DOI: 10.1038/S41467-017-00151-0  0.778
2016 Mahat DB, Lis JT. Use of conditioned media is critical for studies of regulation in response to rapid heat shock. Cell Stress & Chaperones. PMID 27812889 DOI: 10.1007/s12192-016-0737-x  0.449
2016 Watters KE, Strobel EJ, Yu AM, Lis JT, Lucks JB. Cotranscriptional folding of a riboswitch at nucleotide resolution. Nature Structural & Molecular Biology. PMID 27798597 DOI: 10.1038/Nsmb.3316  0.815
2016 Zhao Y, Liu Q, Acharya P, Stengel KR, Sheng Q, Zhou X, Kwak H, Fischer MA, Bradner JE, Strickland SA, Mohan SR, Savona MR, Venters BJ, Zhou MM, Lis JT, et al. High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML. Cell Reports. PMID 27498870 DOI: 10.1016/J.Celrep.2016.07.032  0.643
2016 Duarte FM, Fuda NJ, Mahat DB, Core LJ, Guertin MJ, Lis JT. Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation. Genes & Development. PMID 27492368 DOI: 10.1101/Gad.284430.116  0.859
2016 Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nature Protocols. 11: 1455-1476. PMID 27442863 DOI: 10.1038/Nprot.2016.086  0.812
2016 Reinholt SJ, Ozer A, Lis JT, Craighead HG. Highly Multiplexed RNA Aptamer Selection using a Microplate-based Microcolumn Device. Scientific Reports. 6: 29771. PMID 27432610 DOI: 10.1038/Srep29771  0.311
2016 Booth GT, Wang IX, Cheung VG, Lis JT. Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Research. 26: 1010-1. PMID 27371223 DOI: 10.1101/Gr.210161.116  0.328
2016 Booth GT, Wang IX, Cheung VG, Lis JT. Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Research. PMID 27197211 DOI: 10.1101/Gr.204578.116  0.593
2016 Mahat DB, Salamanca HH, Duarte FM, Danko CG, Lis JT. Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation. Molecular Cell. 62: 63-78. PMID 27052732 DOI: 10.1016/j.molcel.2016.02.025  0.542
2016 Lis JT, Danko C, Duarte F, Mahat DB. Abstract IA05: Genome-wide views into the mechanisms of transcription regulation Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-Ia05  0.579
2016 Wang J, Singh A, Cupri Rinaldi F, Lis J, Bogdanove A, Zipfel W. Visualizing Specific Genomic Loci using Fluorescently Labeled Transcription Activator-Like Effectors Biophysical Journal. 110: 649a-650a. DOI: 10.1016/J.Bpj.2015.11.3475  0.492
2016 Van Slyke AL, Singh A, Cupri Rinaldi F, Bogdanove AJ, Lis JT, Zipfel WR. Investigating the Kinetics and Specificity of Transcription Activator-Like Effector Binding using High Throughput Single Molecule Imaging Biophysical Journal. 110: 640a. DOI: 10.1016/J.Bpj.2015.11.3427  0.362
2016 Kushner M, Van Slyke A, Rinaldi F, Singh A, Lis J, Bogdanove A, Zipfel W. Examining Tale Protein Binding Kinetics and Site Competition using Single Molecule Imaging Biophysical Journal. 110: 238a. DOI: 10.1016/J.Bpj.2015.11.1310  0.333
2015 Andersson R, Chen Y, Core L, Lis JT, Sandelin A, Jensen TH. Human Gene Promoters Are Intrinsically Bidirectional. Molecular Cell. 60: 346-7. PMID 26545074 DOI: 10.1016/J.Molcel.2015.10.015  0.662
2015 Welsh IC, Kwak H, Chen FL, Werner M, Shopland LS, Danko CG, Lis JT, Zhang M, Martin JF, Kurpios NA. Chromatin Architecture of the Pitx2 Locus Requires CTCF- and Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality. Cell Reports. PMID 26411685 DOI: 10.1016/J.Celrep.2015.08.075  0.677
2015 Ozer A, Tome JM, Friedman RC, Gheba D, Schroth GP, Lis JT. Quantitative assessment of RNA-protein interactions with high-throughput sequencing-RNA affinity profiling. Nature Protocols. 10: 1212-33. PMID 26182240 DOI: 10.1038/Nprot.2015.074  0.434
2015 Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT. GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters. Plos Genetics. 11: e1005108. PMID 25815464 DOI: 10.1371/Journal.Pgen.1005108  0.869
2015 Danko CG, Hyland SL, Core LJ, Martins AL, Waters CT, Lee HW, Cheung VG, Kraus WL, Lis JT, Siepel A. Identification of active transcriptional regulatory elements from GRO-seq data. Nature Methods. 12: 433-8. PMID 25799441 DOI: 10.1038/Nmeth.3329  0.788
2015 Jonkers I, Lis JT. Getting up to speed with transcription elongation by RNA polymerase II. Nature Reviews. Molecular Cell Biology. 16: 167-77. PMID 25693130 DOI: 10.1038/nrm3953  0.594
2015 Van Slyke AL, Singh A, Wakefield D, Mahat DB, Buckley MS, Baird B, Lis JT, Zipfel WR. Investigating the Kinetics of HSF Binding Using High Throughput Single Molecule Imaging Biophysical Journal. 108: 162a-163a. DOI: 10.1016/J.Bpj.2014.11.897  0.699
2014 Core LJ, Martins AL, Danko CG, Waters CT, Siepel A, Lis JT. Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nature Genetics. 46: 1311-20. PMID 25383968 DOI: 10.1038/Ng.3142  0.793
2014 Guertin MJ, Zhang X, Anguish L, Kim S, Varticovski L, Lis JT, Hager GL, Coonrod SA. Targeted H3R26 deimination specifically facilitates estrogen receptor binding by modifying nucleosome structure. Plos Genetics. 10: e1004613. PMID 25211228 DOI: 10.1371/Journal.Pgen.1004613  0.698
2014 Jonkers I, Kwak H, Lis JT. Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons. Elife. 3: e02407. PMID 24843027 DOI: 10.7554/Elife.02407  0.704
2014 Marr SK, Lis JT, Treisman JE, Marr MT. The metazoan-specific mediator subunit 26 (Med26) is essential for viability and is found at both active genes and pericentric heterochromatin in Drosophila melanogaster. Molecular and Cellular Biology. 34: 2710-20. PMID 24820420 DOI: 10.1128/MCB.01365-13  0.393
2014 Tome JM, Ozer A, Pagano JM, Gheba D, Schroth GP, Lis JT. Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling. Nature Methods. 11: 683-8. PMID 24809628 DOI: 10.1038/Nmeth.2970  0.434
2014 Salamanca HH, Antonyak MA, Cerione RA, Shi H, Lis JT. Inhibiting heat shock factor 1 in human cancer cells with a potent RNA aptamer. Plos One. 9: e96330. PMID 24800749 DOI: 10.1371/Journal.Pone.0096330  0.471
2014 Buckley MS, Lis JT. Imaging RNA Polymerase II transcription sites in living cells. Current Opinion in Genetics & Development. 25: 126-30. PMID 24794700 DOI: 10.1016/J.Gde.2014.01.002  0.766
2014 Meng HW, Pagano JM, White BS, Toyoda Y, Min IM, Craighead HG, Shalloway D, Lis JT, Xiao K, Jin MM. Discovering aptamers by cell-SELEX against human soluble growth factors ectopically expressed on yeast cell surface. Plos One. 9: e93052. PMID 24675636 DOI: 10.1371/Journal.Pone.0093052  0.321
2014 Wang IX, Core LJ, Kwak H, Brady L, Bruzel A, McDaniel L, Richards AL, Wu M, Grunseich C, Lis JT, Cheung VG. RNA-DNA differences are generated in human cells within seconds after RNA exits polymerase II. Cell Reports. 6: 906-15. PMID 24561252 DOI: 10.1016/J.Celrep.2014.01.037  0.812
2014 Szeto K, Reinholt SJ, Duarte FM, Pagano JM, Ozer A, Yao L, Lis JT, Craighead HG. High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device. Analytical and Bioanalytical Chemistry. 406: 2727-32. PMID 24553662 DOI: 10.1007/S00216-014-7661-7  0.341
2014 Maxwell CS, Kruesi WS, Core LJ, Kurhanewicz N, Waters CT, Lewarch CL, Antoshechkin I, Lis JT, Meyer BJ, Baugh LR. Pol II docking and pausing at growth and stress genes in C. elegans. Cell Reports. 6: 455-66. PMID 24485661 DOI: 10.1016/J.Celrep.2014.01.008  0.786
2014 Pagano JM, Kwak H, Waters CT, Sprouse RO, White BS, Ozer A, Szeto K, Shalloway D, Craighead HG, Lis JT. Defining NELF-E RNA binding in HIV-1 and promoter-proximal pause regions. Plos Genetics. 10: e1004090. PMID 24453987 DOI: 10.1371/Journal.Pgen.1004090  0.693
2014 Buckley MS, Kwak H, Zipfel WR, Lis JT. Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation. Genes & Development. 28: 14-9. PMID 24395245 DOI: 10.1101/Gad.231886.113  0.807
2014 Jonkers I, Kwak H, Lis JT. Author response: Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons Elife. DOI: 10.7554/Elife.02407.025  0.632
2014 Wang J, Singh A, Ozer A, Lis J, Zipfel W. Super-Resolution Imaging of GFP Expressing Cells using Dye Labeled GFP Aptamers Biophysical Journal. 106: 401a. DOI: 10.1016/J.Bpj.2013.11.2259  0.315
2013 Szeto K, Latulippe DR, Ozer A, Pagano JM, White BS, Shalloway D, Lis JT, Craighead HG. RAPID-SELEX for RNA aptamers. Plos One. 8: e82667. PMID 24376564 DOI: 10.1371/Journal.Pone.0082667  0.414
2013 Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, ... ... Lis JT, et al. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science (New York, N.Y.). 342: 744-7. PMID 24136355 DOI: 10.1126/Science.1242463  0.771
2013 Kwak H, Lis JT. Control of transcriptional elongation. Annual Review of Genetics. 47: 483-508. PMID 24050178 DOI: 10.1146/Annurev-Genet-110711-155440  0.702
2013 Kruesi WS, Core LJ, Waters CT, Lis JT, Meyer BJ. Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. Elife. 2: e00808. PMID 23795297 DOI: 10.7554/Elife.00808  0.775
2013 Fuda NJ, Lis JT. A new player in Pol II pausing. The Embo Journal. 32: 1796-8. PMID 23749213 DOI: 10.1038/Emboj.2013.138  0.858
2013 Saunders A, Core LJ, Sutcliffe C, Lis JT, Ashe HL. Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. Genes & Development. 27: 1146-58. PMID 23699410 DOI: 10.1101/Gad.215459.113  0.835
2013 Schaaf CA, Kwak H, Koenig A, Misulovin Z, Gohara DW, Watson A, Zhou Y, Lis JT, Dorsett D. Genome-wide control of RNA polymerase II activity by cohesin. Plos Genetics. 9: e1003382. PMID 23555293 DOI: 10.1371/Journal.Pgen.1003382  0.738
2013 Zhao X, Lis JT, Shi H. A systematic study of the features critical for designing a high avidity multivalent aptamer. Nucleic Acid Therapeutics. 23: 238-42. PMID 23550551 DOI: 10.1089/Nat.2012.0410  0.693
2013 Danko CG, Hah N, Luo X, Martins AL, Core L, Lis JT, Siepel A, Kraus WL. Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. Molecular Cell. 50: 212-22. PMID 23523369 DOI: 10.1016/J.Molcel.2013.05.025  0.793
2013 Kim S, Min IM, Ren S, Spector A, Jin MM, Lis JT. Development of temperature-sensitive mutants of the Drosophila melanogaster P-TEFb (Cyclin T/CDK9) heterodimer using yeast two-hybrid screening. Biochemical and Biophysical Research Communications. 433: 243-8. PMID 23500466 DOI: 10.1016/J.Bbrc.2013.02.091  0.344
2013 Kwak H, Fuda NJ, Core LJ, Lis JT. Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science (New York, N.Y.). 339: 950-3. PMID 23430654 DOI: 10.1126/Science.1229386  0.848
2013 Latulippe DR, Szeto K, Ozer A, Duarte FM, Kelly CV, Pagano JM, White BS, Shalloway D, Lis JT, Craighead HG. Multiplexed microcolumn-based process for efficient selection of RNA aptamers. Analytical Chemistry. 85: 3417-24. PMID 23398198 DOI: 10.1021/Ac400105E  0.354
2013 Guertin MJ, Lis JT. Mechanisms by which transcription factors gain access to target sequence elements in chromatin. Current Opinion in Genetics & Development. 23: 116-23. PMID 23266217 DOI: 10.1016/J.Gde.2012.11.008  0.714
2013 Kruesi WS, Core LJ, Waters CT, Lis JT, Meyer BJ. Author response: Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation Elife. DOI: 10.7554/Elife.00808.042  0.738
2012 Core LJ, Waterfall JJ, Gilchrist DA, Fargo DC, Kwak H, Adelman K, Lis JT. Defining the status of RNA polymerase at promoters. Cell Reports. 2: 1025-35. PMID 23062713 DOI: 10.1016/J.Celrep.2012.08.034  0.848
2012 Adelman K, Lis JT. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nature Reviews. Genetics. 13: 720-31. PMID 22986266 DOI: 10.1038/nrg3293  0.553
2012 Zhang X, Bolt M, Guertin MJ, Chen W, Zhang S, Cherrington BD, Slade DJ, Dreyton CJ, Subramanian V, Bicker KL, Thompson PR, Mancini MA, Lis JT, Coonrod SA. Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation. Proceedings of the National Academy of Sciences of the United States of America. 109: 13331-6. PMID 22853951 DOI: 10.1073/Pnas.1203280109  0.667
2012 Fuda NJ, Buckley MS, Wei W, Core LJ, Waters CT, Reinberg D, Lis JT. Fcp1 dephosphorylation of the RNA polymerase II C-terminal domain is required for efficient transcription of heat shock genes. Molecular and Cellular Biology. 32: 3428-37. PMID 22733996 DOI: 10.1128/Mcb.00247-12  0.847
2012 Guertin MJ, Martins AL, Siepel A, Lis JT. Accurate prediction of inducible transcription factor binding intensities in vivo. Plos Genetics. 8: e1002610. PMID 22479205 DOI: 10.1371/Journal.Pgen.1002610  0.703
2012 Petesch SJ, Lis JT. Overcoming the nucleosome barrier during transcript elongation. Trends in Genetics : Tig. 28: 285-94. PMID 22465610 DOI: 10.1016/j.tig.2012.02.005  0.529
2012 Nguyen D, Krueger BJ, Sedore SC, Brogie JE, Rogers JT, Rajendra TK, Saunders A, Matera AG, Lis JT, Uguen P, Price DH. The Drosophila 7SK snRNP and the essential role of dHEXIM in development. Nucleic Acids Research. 40: 5283-97. PMID 22379134 DOI: 10.1093/Nar/Gks191  0.651
2012 Shui B, Ozer A, Zipfel W, Sahu N, Singh A, Lis JT, Shi H, Kotlikoff MI. RNA aptamers that functionally interact with green fluorescent protein and its derivatives. Nucleic Acids Research. 40: e39. PMID 22189104 DOI: 10.1093/Nar/Gkr1264  0.321
2012 Petesch SJ, Lis JT. Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. Molecular Cell. 45: 64-74. PMID 22178397 DOI: 10.1016/j.molcel.2011.11.015  0.437
2011 Hartford SA, Luo Y, Southard TL, Min IM, Lis JT, Schimenti JC. Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression. Proceedings of the National Academy of Sciences of the United States of America. 108: 17702-7. PMID 21987787 DOI: 10.1073/pnas.1113524108  0.314
2011 Chopra VS, Hendrix DA, Core LJ, Tsui C, Lis JT, Levine M. The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. Molecular Cell. 42: 837-44. PMID 21700228 DOI: 10.1016/J.Molcel.2011.05.009  0.775
2011 Ardehali MB, Mei A, Zobeck KL, Caron M, Lis JT, Kusch T. Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. The Embo Journal. 30: 2817-28. PMID 21694722 DOI: 10.1038/Emboj.2011.194  0.836
2011 Salamanca HH, Fuda N, Shi H, Lis JT. An RNA aptamer perturbs heat shock transcription factor activity in Drosophila melanogaster. Nucleic Acids Research. 39: 6729-40. PMID 21576228 DOI: 10.1093/nar/gkr206  0.842
2011 Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell. 145: 622-34. PMID 21549415 DOI: 10.1016/J.Cell.2011.03.042  0.763
2011 Min IM, Waterfall JJ, Core LJ, Munroe RJ, Schimenti J, Lis JT. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes & Development. 25: 742-54. PMID 21460038 DOI: 10.1101/Gad.2005511  0.822
2011 Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, Park PJ, Kuroda MI. X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature. 471: 115-8. PMID 21368835 DOI: 10.1038/Nature09757  0.766
2011 Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL. Erratum: A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells (Cell (2011) 145 (622-634)) Cell. 145. DOI: 10.1016/J.Cell.2011.06.003  0.691
2010 Guertin MJ, Petesch SJ, Zobeck KL, Min IM, Lis JT. Drosophila heat shock system as a general model to investigate transcriptional regulation. Cold Spring Harbor Symposia On Quantitative Biology. 75: 1-9. PMID 21467139 DOI: 10.1101/Sqb.2010.75.039  0.867
2010 Zobeck KL, Buckley MS, Zipfel WR, Lis JT. Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. Molecular Cell. 40: 965-75. PMID 21172661 DOI: 10.1016/J.Molcel.2010.11.022  0.843
2010 Bartkowiak B, Liu P, Phatnani HP, Fuda NJ, Cooper JJ, Price DH, Adelman K, Lis JT, Greenleaf AL. CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. Genes & Development. 24: 2303-16. PMID 20952539 DOI: 10.1101/Gad.1968210  0.798
2010 Guertin MJ, Lis JT. Chromatin landscape dictates HSF binding to target DNA elements. Plos Genetics. 6: e1001114. PMID 20844575 DOI: 10.1371/Journal.Pgen.1001114  0.733
2010 Wang S, Zhao X, Suran R, Vogt VM, Lis JT, Shi H. Knocking down gene function with an RNA aptamer expressed as part of an intron. Nucleic Acids Research. 38: e154. PMID 20542918 DOI: 10.1093/Nar/Gkq529  0.737
2009 Ardehali MB, Lis JT. Tracking rates of transcription and splicing in vivo. Nature Structural & Molecular Biology. 16: 1123-4. PMID 19888309 DOI: 10.1038/nsmb1109-1123  0.565
2009 Fuda NJ, Ardehali MB, Lis JT. Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature. 461: 186-92. PMID 19741698 DOI: 10.1038/Nature08449  0.862
2009 Hong SW, Hong SM, Yoo JW, Lee YC, Kim S, Lis JT, Lee DK. Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome. Proceedings of the National Academy of Sciences of the United States of America. 106: 14276-80. PMID 19666497 DOI: 10.1073/pnas.0903642106  0.443
2009 Core LJ, Lis JT. Paused Pol II captures enhancer activity and acts as a potent insulator. Genes & Development. 23: 1606-12. PMID 19605681 DOI: 10.1101/Gad.1827709  0.767
2009 Seila AC, Core LJ, Lis JT, Sharp PA. Divergent transcription: a new feature of active promoters. Cell Cycle (Georgetown, Tex.). 8: 2557-64. PMID 19597342 DOI: 10.4161/Cc.8.16.9305  0.81
2009 Park SM, Ahn JY, Jo M, Lee DK, Lis JT, Craighead HG, Kim S. Selection and elution of aptamers using nanoporous sol-gel arrays with integrated microheaters. Lab On a Chip. 9: 1206-12. PMID 19370238 DOI: 10.1039/B814993C  0.335
2009 Ardehali MB, Yao J, Adelman K, Fuda NJ, Petesch SJ, Webb WW, Lis JT. Spt6 enhances the elongation rate of RNA polymerase II in vivo. The Embo Journal. 28: 1067-77. PMID 19279664 DOI: 10.1038/Emboj.2009.56  0.849
2009 Hall MA, Shundrovsky A, Bai L, Fulbright RM, Lis JT, Wang MD. High-resolution dynamic mapping of histone-DNA interactions in a nucleosome. Nature Structural & Molecular Biology. 16: 124-9. PMID 19136959 DOI: 10.1038/Nsmb.1526  0.357
2009 Lis JT, Buckley M, Core LJ, Min IM, Petesch S, Waterfall JJ, Zobeck K. New Views of Local and Genome-wide Transcription Regulation in Vivo Journal of Genetics and Molecular Biology. 20: 90-90. DOI: 10.30047/Jgmb.200912.0017  0.795
2008 Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science (New York, N.Y.). 322: 1845-8. PMID 19056941 DOI: 10.1126/Science.1162228  0.803
2008 Petesch SJ, Lis JT. Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell. 134: 74-84. PMID 18614012 DOI: 10.1016/j.cell.2008.05.029  0.581
2008 Yao J, Zobeck KL, Lis JT, Webb WW. Imaging transcription dynamics at endogenous genes in living Drosophila tissues. Methods (San Diego, Calif.). 45: 233-41. PMID 18586105 DOI: 10.1016/J.Ymeth.2008.06.004  0.836
2008 Sevilimedu A, Shi H, Lis JT. TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages. Nucleic Acids Research. 36: 3118-27. PMID 18403417 DOI: 10.1093/nar/gkn163  0.523
2008 Core LJ, Lis JT. Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science (New York, N.Y.). 319: 1791-2. PMID 18369138 DOI: 10.1126/Science.1150843  0.815
2008 Ni Z, Saunders A, Fuda NJ, Yao J, Suarez JR, Webb WW, Lis JT. P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo. Molecular and Cellular Biology. 28: 1161-70. PMID 18070927 DOI: 10.1128/Mcb.01859-07  0.845
2007 Yao J, Ardehali MB, Fecko CJ, Webb WW, Lis JT. Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Molecular Cell. 28: 978-90. PMID 18158896 DOI: 10.1016/J.Molcel.2007.10.017  0.857
2007 Fecko CJ, Munson KM, Saunders A, Sun G, Begley TP, Lis JT, Webb WW. Comparison of femtosecond laser and continuous wave UV sources for protein-nucleic acid crosslinking. Photochemistry and Photobiology. 83: 1394-404. PMID 18028214 DOI: 10.1111/J.1751-1097.2007.00179.X  0.765
2007 Lis JT. Imaging Drosophila gene activation and polymerase pausing in vivo. Nature. 450: 198-202. PMID 17994086 DOI: 10.1038/nature06324  0.449
2007 Shi H, Fan X, Sevilimedu A, Lis JT. RNA aptamers directed to discrete functional sites on a single protein structural domain. Proceedings of the National Academy of Sciences of the United States of America. 104: 3742-6. PMID 17360423 DOI: 10.1073/Pnas.0607805104  0.648
2006 Saunders A, Core LJ, Lis JT. Breaking barriers to transcription elongation. Nature Reviews. Molecular Cell Biology. 7: 557-67. PMID 16936696 DOI: 10.1038/Nrm1981  0.864
2006 Yao J, Munson KM, Webb WW, Lis JT. Dynamics of heat shock factor association with native gene loci in living cells. Nature. 442: 1050-3. PMID 16929308 DOI: 10.1038/Nature05025  0.743
2006 Zhao X, Shi H, Sevilimedu A, Liachko N, Nelson HC, Lis JT. An RNA aptamer that interferes with the DNA binding of the HSF transcription activator. Nucleic Acids Research. 34: 3755-61. PMID 16893958 DOI: 10.1093/Nar/Gkl470  0.715
2006 Lis JT, Kraus WL. Promoter cleavage: a topoIIbeta and PARP-1 collaboration. Cell. 125: 1225-7. PMID 16814707 DOI: 10.1016/j.cell.2006.06.016  0.463
2006 Shundrovsky A, Smith CL, Lis JT, Peterson CL, Wang MD. Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nature Structural & Molecular Biology. 13: 549-54. PMID 16732285 DOI: 10.1038/Nsmb1102  0.353
2006 Adelman K, Wei W, Ardehali MB, Werner J, Zhu B, Reinberg D, Lis JT. Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Molecular and Cellular Biology. 26: 250-60. PMID 16354696 DOI: 10.1128/Mcb.26.1.250-260.2006  0.58
2005 Kim YJ, Lis JT. Interactions between subunits of Drosophila Mediator and activator proteins. Trends in Biochemical Sciences. 30: 245-9. PMID 15896742 DOI: 10.1016/j.tibs.2005.03.010  0.554
2005 Fan X, Shi H, Lis JT. Distinct transcriptional responses of RNA polymerases I, II and III to aptamers that bind TBP. Nucleic Acids Research. 33: 838-45. PMID 15701755 DOI: 10.1093/Nar/Gki212  0.72
2005 Brower-Toland B, Wacker DA, Fulbright RM, Lis JT, Kraus WL, Wang MD. Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. Journal of Molecular Biology. 346: 135-46. PMID 15663933 DOI: 10.1016/J.Jmb.2004.11.056  0.336
2005 Adelman K, Marr MT, Werner J, Saunders A, Ni Z, Andrulis ED, Lis JT. Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Molecular Cell. 17: 103-12. PMID 15629721 DOI: 10.1016/J.Molcel.2004.11.028  0.86
2004 Kim MY, Mauro S, Gévry N, Lis JT, Kraus WL. NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell. 119: 803-14. PMID 15607977 DOI: 10.1016/J.Cell.2004.11.002  0.403
2004 Adelman K, Yuzenkova J, La Porta A, Zenkin N, Lee J, Lis JT, Borukhov S, Wang MD, Severinov K. Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Molecular Cell. 14: 753-62. PMID 15200953 DOI: 10.1016/J.Molcel.2004.05.017  0.477
2004 Bourbon HM, Aguilera A, Ansari AZ, Asturias FJ, Berk AJ, Bjorklund S, Blackwell TK, Borggrefe T, Carey M, Carlson M, Conaway JW, Conaway RC, Emmons SW, Fondell JD, Freedman LP, ... ... Lis JT, et al. A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Molecular Cell. 14: 553-7. PMID 15175151 DOI: 10.1016/J.Molcel.2004.05.011  0.544
2004 Fan X, Shi H, Adelman K, Lis JT. Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes. Proceedings of the National Academy of Sciences of the United States of America. 101: 6934-9. PMID 15103022 DOI: 10.1073/Pnas.0401523101  0.702
2004 Belotserkovskaya R, Saunders A, Lis JT, Reinberg D. Transcription through chromatin: understanding a complex FACT. Biochimica Et Biophysica Acta. 1677: 87-99. PMID 15020050 DOI: 10.1016/J.Bbaexp.2003.09.017  0.72
2004 Schwartz BE, Werner JK, Lis JT. Indirect immunofluorescent labeling of Drosophila polytene chromosomes: visualizing protein interactions with chromatin in vivo. Methods in Enzymology. 376: 393-404. PMID 14975320 DOI: 10.1016/S0076-6879(03)76026-1  0.36
2004 Ni Z, Schwartz BE, Werner J, Suarez JR, Lis JT. Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes. Molecular Cell. 13: 55-65. PMID 14731394 DOI: 10.1016/S1097-2765(03)00526-4  0.724
2003 Boehm AK, Saunders A, Werner J, Lis JT. Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Molecular and Cellular Biology. 23: 7628-37. PMID 14560008 DOI: 10.1128/Mcb.23.21.7628-7637.2003  0.731
2003 Schwartz BE, Larochelle S, Suter B, Lis JT. Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo. Molecular and Cellular Biology. 23: 6876-86. PMID 12972606 DOI: 10.1128/MCB.23.19.6876-6886.2003  0.576
2003 Saunders A, Werner J, Andrulis ED, Nakayama T, Hirose S, Reinberg D, Lis JT. Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science (New York, N.Y.). 301: 1094-6. PMID 12934007 DOI: 10.1126/Science.1085712  0.862
2003 Kraus WL, Lis JT. PARP goes transcription. Cell. 113: 677-83. PMID 12809599 DOI: 10.1016/S0092-8674(03)00433-1  0.473
2003 Kim S, Shi H, Lee DK, Lis JT. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Nucleic Acids Research. 31: 1955-61. PMID 12655012 DOI: 10.1093/nar/gkg286  0.449
2002 Andrulis ED, Werner J, Nazarian A, Erdjument-Bromage H, Tempst P, Lis JT. The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila. Nature. 420: 837-41. PMID 12490954 DOI: 10.1038/nature01181  0.832
2002 Shi H, Fan X, Ni Z, Lis JT. Evolutionary dynamics and population control during in vitro selection and amplification with multiple targets. Rna (New York, N.Y.). 8: 1461-70. PMID 12458799 DOI: 10.1017/S1355838202029941  0.692
2002 Adelman K, La Porta A, Santangelo TJ, Lis JT, Roberts JW, Wang MD. Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior. Proceedings of the National Academy of Sciences of the United States of America. 99: 13538-43. PMID 12370445 DOI: 10.1073/Pnas.212358999  0.631
2002 Armstrong JA, Papoulas O, Daubresse G, Sperling AS, Lis JT, Scott MP, Tamkun JW. The Drosophila BRM complex facilitates global transcription by RNA polymerase II. The Embo Journal. 21: 5245-54. PMID 12356740 DOI: 10.1093/emboj/cdf517  0.571
2002 Adelman K, Lis JT. How does Pol II overcome the nucleosome barrier? Molecular Cell. 9: 451-2. PMID 11931751 DOI: 10.1016/S1097-2765(02)00487-2  0.534
2002 Brower-Toland BD, Smith CL, Yeh RC, Lis JT, Peterson CL, Wang MD. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 1960-5. PMID 11854495 DOI: 10.1073/Pnas.022638399  0.309
2001 Park JM, Werner J, Kim JM, Lis JT, Kim YJ. Mediator, not holoenzyme, is directly recruited to the heat shock promoter by HSF upon heat shock. Molecular Cell. 8: 9-19. PMID 11511356 DOI: 10.1016/S1097-2765(01)00296-9  0.543
2000 Andrulis ED, Guzmán E, Döring P, Werner J, Lis JT. High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes & Development. 14: 2635-49. PMID 11040217 DOI: 10.1101/Gad.844200  0.841
2000 Takada S, Lis JT, Zhou S, Tjian R. A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell. 101: 459-69. PMID 10850489 DOI: 10.1016/S0092-8674(00)80857-0  0.705
2000 Lis JT, Mason P, Peng J, Price DH, Werner J. P-TEFb kinase recruitment and function at heat shock loci. Genes & Development. 14: 792-803. PMID 10766736 DOI: 10.1101/Gad.14.7.792  0.784
1999 Lee DK, Kim S, Lis JT. Different upstream transcriptional activators have distinct coactivator requirements. Genes & Development. 13: 2934-9. PMID 10580000 DOI: 10.1101/gad.13.22.2934  0.566
1999 Shi H, Hoffman BE, Lis JT. RNA aptamers as effective protein antagonists in a multicellular organism. Proceedings of the National Academy of Sciences of the United States of America. 96: 10033-8. PMID 10468557 DOI: 10.1073/pnas.96.18.10033  0.416
1999 Guzmán E, Lis JT. Transcription factor TFIIH is required for promoter melting in vivo. Molecular and Cellular Biology. 19: 5652-8. PMID 10409754 DOI: 10.1128/Mcb.19.8.5652  0.748
1999 Hirayoshi K, Lis JT. Nuclear run-on assays: assessing transcription by measuring density of engaged RNA polymerases. Methods in Enzymology. 304: 351-62. PMID 10372370 DOI: 10.1016/S0076-6879(99)04021-5  0.478
1999 Rabenstein MD, Zhou S, Lis JT, Tjian R. TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proceedings of the National Academy of Sciences of the United States of America. 96: 4791-6. PMID 10220372 DOI: 10.1073/Pnas.96.9.4791  0.689
1999 Lin JT, Lis JT. Glycogen synthase phosphatase interacts with heat shock factor to activate CUP1 gene transcription in Saccharomyces cerevisiae. Molecular and Cellular Biology. 19: 3237-45. PMID 10207049 DOI: 10.1128/Mcb.19.5.3237  0.515
1999 Wilkins RC, Lis JT. DNA distortion and multimerization: novel functions of the glutamine-rich domain of GAGA factor. Journal of Molecular Biology. 285: 515-25. PMID 9878426 DOI: 10.1006/jmbi.1998.2356  0.369
1998 Lis J. Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation. Cold Spring Harbor Symposia On Quantitative Biology. 63: 347-356. PMID 10384299 DOI: 10.1101/Sqb.1998.63.347  0.468
1998 Ulrich H, Ippolito JE, Pagán OR, Eterović VA, Hann RM, Shi H, Lis JT, Eldefrawi ME, Hess GP. In vitro selection of RNA molecules that displace cocaine from the membrane-bound nicotinic acetylcholine receptor. Proceedings of the National Academy of Sciences of the United States of America. 95: 14051-6. PMID 9826651 DOI: 10.1073/Pnas.95.24.14051  0.587
1998 Lee D, Lis JT. Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo. Nature. 393: 389-92. PMID 9620805 DOI: 10.1038/30770  0.567
1998 Wilkins RC, Lis JT. GAGA factor binding to DNA via a single trinucleotide sequence element. Nucleic Acids Research. 26: 2672-8. PMID 9592153 DOI: 10.1093/nar/26.11.2672  0.438
1998 Law A, Hirayoshi K, O'Brien T, Lis JT. Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila. Nucleic Acids Research. 26: 919-24. PMID 9461448 DOI: 10.1093/nar/26.4.919  0.498
1998 Ulrich H, Ippolito F, Pagan OR, Shi H, Lis JT, Hess GP. Cocaine-displaceable rna aptamers bound to the nicotinic acetylcholine receptor Faseb Journal. 12: A1303.  0.48
1997 Mason PB, Lis JT. Cooperative and competitive protein interactions at the hsp70 promoter. The Journal of Biological Chemistry. 272: 33227-33. PMID 9407112 DOI: 10.1074/Jbc.272.52.33227  0.816
1997 Xiao H, Lis JT, Jeang KT. Promoter activity of Tat at steps subsequent to TATA-binding protein recruitment. Molecular and Cellular Biology. 17: 6898-905. PMID 9372921 DOI: 10.1128/Mcb.17.12.6898  0.333
1997 Hansen SK, Takada S, Jacobson RH, Lis JT, Tjian R. Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell. 91: 71-83. PMID 9335336 DOI: 10.1016/S0092-8674(01)80010-6  0.694
1997 Wilkins RC, Lis JT. Dynamics of potentiation and activation: GAGA factor and its role in heat shock gene regulation. Nucleic Acids Research. 25: 3963-8. PMID 9321643 DOI: 10.1093/nar/25.20.3963  0.445
1997 Shi H, Hoffman BE, Lis JT. A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52. Molecular and Cellular Biology. 17: 2649-57. PMID 9111335 DOI: 10.1128/MCB.17.5.2649  0.437
1996 Shopland LS, Lis JT. HSF recruitment and loss at most Drosophila heat shock loci is coordinated and depends on proximal promoter sequences. Chromosoma. 105: 158-71. PMID 8781184 DOI: 10.1007/Bf02509497  0.47
1995 Fernandes M, Xiao H, Lis JT. Binding of heat shock factor to and transcriptional activation of heat shock genes in Drosophila. Nucleic Acids Research. 23: 4799-804. PMID 8532521 DOI: 10.1093/Nar/23.23.4799  0.415
1995 O'Brien T, Wilkins RC, Giardina C, Lis JT. Distribution of GAGA protein on Drosophila genes in vivo. Genes & Development. 9: 1098-110. PMID 7744251 DOI: 10.1101/Gad.9.9.1098  0.527
1995 Giardina C, Lis JT. Dynamic protein-DNA architecture of a yeast heat shock promoter. Molecular and Cellular Biology. 15: 2737-44. PMID 7739554 DOI: 10.1128/Mcb.15.5.2737  0.421
1995 Giardina C, Lis JT. Sodium salicylate and yeast heat shock gene transcription. The Journal of Biological Chemistry. 270: 10369-72. PMID 7737966 DOI: 10.1074/Jbc.270.18.10369  0.536
1995 Shopland LS, Hirayoshi K, Fernandes M, Lis JT. HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites. Genes & Development. 9: 2756-69. PMID 7590251 DOI: 10.1101/Gad.9.22.2756  0.588
1995 Xiao H, Friesen JD, Lis JT. Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator. Molecular and Cellular Biology. 15: 5757-61. PMID 7565728 DOI: 10.1128/Mcb.15.10.5757  0.512
1995 Rasmussen EB, Lis JT. Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing. Journal of Molecular Biology. 252: 522-35. PMID 7563071 DOI: 10.1006/jmbi.1995.0517  0.59
1994 Champlin DT, Lis JT. Distribution of B52 within a chromosomal locus depends on the level of transcription. Molecular Biology of the Cell. 5: 71-9. PMID 8186467 DOI: 10.1091/Mbc.5.1.71  0.477
1994 Fernandes M, Xiao H, Lis JT. Fine structure analyses of the Drosophila and Saccharomyces heat shock factor--heat shock element interactions. Nucleic Acids Research. 22: 167-73. PMID 8121800 DOI: 10.1093/Nar/22.2.167  0.397
1994 Amin J, Fernandez M, Ananthan J, Lis JT, Voellmy R. Cooperative binding of heat shock transcription factor to the Hsp70 promoter in vivo and in vitro. The Journal of Biological Chemistry. 269: 4804-11. PMID 8106450  0.373
1994 Kraus ME, Lis JT. The concentration of B52, an essential splicing factor and regulator of splice site choice in vitro, is critical for Drosophila development. Molecular and Cellular Biology. 14: 5360-70. PMID 8035814 DOI: 10.1128/Mcb.14.8.5360  0.358
1994 Xiao H, Lis JT, Xiao H, Greenblatt J, Friesen JD. The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation. Nucleic Acids Research. 22: 1966-73. PMID 8029001 DOI: 10.1093/Nar/22.11.1966  0.535
1994 O'Brien T, Hardin S, Greenleaf A, Lis JT. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation. Nature. 370: 75-7. PMID 8015613 DOI: 10.1038/370075A0  0.565
1994 Xiao H, Friesen JD, Lis JT. A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors. Molecular and Cellular Biology. 14: 7507-16. PMID 7935466 DOI: 10.1128/Mcb.14.11.7507  0.465
1994 Ring HZ, Lis JT. The SR protein B52/SRp55 is essential for Drosophila development. Molecular and Cellular Biology. 14: 7499-506. PMID 7935465 DOI: 10.1128/Mcb.14.11.7499  0.334
1994 Fernandes M, O’Brien T, Lis JT. 15 Structure and Regulation of Heat Shock Gene Promoters Cold Spring Harbor Monograph Archive. 26: 375-393. DOI: 10.1101/087969427.26.375  0.488
1993 O'Brien T, Lis JT. Rapid changes in Drosophila transcription after an instantaneous heat shock. Molecular and Cellular Biology. 13: 3456-63. PMID 8497261 DOI: 10.1128/Mcb.13.6.3456  0.571
1993 Rasmussen EB, Lis JT. In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. Proceedings of the National Academy of Sciences of the United States of America. 90: 7923-7. PMID 8367444 DOI: 10.1073/Pnas.90.17.7923  0.598
1993 Giardina C, Lis JT. DNA melting on yeast RNA polymerase II promoters. Science (New York, N.Y.). 261: 759-62. PMID 8342041 DOI: 10.1126/Science.8342041  0.585
1993 Lis J, Wu C. Protein traffic on the heat shock promoter: Parking, stalling, and trucking along Cell. 74: 1-4. PMID 8334697 DOI: 10.1016/0092-8674(93)90286-Y  0.347
1993 Giardina C, Lis JT. Polymerase processivity and termination on Drosophila heat shock genes. The Journal of Biological Chemistry. 268: 23806-11. PMID 8226916  0.441
1992 Lee H, Kraus KW, Wolfner MF, Lis JT. DNA sequence requirements for generating paused polymerase at the start of hsp70. Genes & Development. 6: 284-95. PMID 1737619 DOI: 10.1101/Gad.6.2.284  0.714
1992 Giardina C, Pérez-Riba M, Lis JT. Promoter melting and TFIID complexes on Drosophila genes in vivo. Genes & Development. 6: 2190-200. PMID 1427079 DOI: 10.1101/Gad.6.11.2190  0.53
1992 Lu Q, Wallrath LL, Allan BD, Glaser RL, Lis JT, Elgin SC. Promoter sequence containing (CT)n.(GA)n repeats is critical for the formation of the DNase I hypersensitive sites in the Drosophila hsp26 gene. Journal of Molecular Biology. 225: 985-98. PMID 1377279 DOI: 10.1016/0022-2836(92)90099-6  0.638
1992 Lis J, Wu C. 34 Heat Shock Factor Cold Spring Harbor Monograph Archive. 907-930. DOI: 10.1101/087969425.22B.907  0.508
1991 O'Brien T, Lis JT. RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene. Molecular and Cellular Biology. 11: 5285-90. PMID 1922045 DOI: 10.1128/Mcb.11.10.5285  0.56
1991 Xiao H, Perisic O, Lis JT. Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell. 64: 585-93. PMID 1899357 DOI: 10.1016/0092-8674(91)90242-Q  0.405
1991 Champlin DT, Frasch M, Saumweber H, Lis JT. Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes & Development. 5: 1611-21. PMID 1885003 DOI: 10.1101/Gad.5.9.1611  0.382
1991 Gilmour DS, Rougvie AE, Lis JT. Protein-DNA cross-linking as a means to determine the distribution of proteins on DNA in vivo. Methods in Cell Biology. 35: 369-81. PMID 1664030 DOI: 10.1016/S0091-679X(08)60580-4  0.618
1990 Glaser RL, Thomas GH, Siegfried E, Elgin SC, Lis JT. Optimal heat-induced expression of the Drosophila hsp26 gene requires a promoter sequence containing (CT)n.(GA)n repeats. Journal of Molecular Biology. 211: 751-61. PMID 2313697 DOI: 10.1016/0022-2836(90)90075-W  0.621
1990 Rougvie AE, Lis JT. Postinitiation transcriptional control in Drosophila melanogaster. Molecular and Cellular Biology. 10: 6041-5. PMID 2172790 DOI: 10.1128/Mcb.10.11.6041  0.578
1990 Xiao H, Lis JT. Closely related DNA sequences specify distinct patterns of developmental expression in Drosophila melanogaster. Molecular and Cellular Biology. 10: 3272-6. PMID 2111452 DOI: 10.1128/Mcb.10.6.3272  0.403
1990 Glaser RL, Lis JT. Multiple, compensatory regulatory elements specify spermatocyte-specific expression of the Drosophila melanogaster hsp26 gene. Molecular and Cellular Biology. 10: 131-7. PMID 2104657 DOI: 10.1128/Mcb.10.1.131  0.411
1990 Lis JT, Xiao H, Perisic O. 17 Modular Units of Heat Shock Regulatory Regions: Structure and Function Cold Spring Harbor Monograph Archive. 19: 411-428. DOI: 10.1101/087969337.19.411  0.447
1989 Perisic O, Xiao H, Lis JT. Stable binding of Drosophila heat shock factor to head-to-head and tail-to-tail repeats of a conserved 5 bp recognition unit. Cell. 59: 797-806. PMID 2590940 DOI: 10.1016/0092-8674(89)90603-X  0.372
1989 Xiao H, Lis JT. Heat shock and developmental regulation of the Drosophila melanogaster hsp83 gene. Molecular and Cellular Biology. 9: 1746-53. PMID 2471067 DOI: 10.1128/Mcb.9.4.1746  0.418
1988 Sun XH, Tso JY, Lis J, Wu R. Differential regulation of the two glyceraldehyde-3-phosphate dehydrogenase genes during Drosophila development. Molecular and Cellular Biology. 8: 5200-5. PMID 3149711 DOI: 10.1128/Mcb.8.12.5200  0.443
1988 Kraus KW, Lee YH, Lis JT, Wolfner MF. Sex-specific control of Drosophila melanogaster yolk protein 1 gene expression is limited to transcription. Molecular and Cellular Biology. 8: 4756-64. PMID 3145403 DOI: 10.1128/Mcb.8.11.4756  0.677
1988 Monsma SA, Ard R, Lis JT, Wolfner MF. Localized heat-shock induction in Drosophila melanogaster. The Journal of Experimental Zoology. 247: 279-84. PMID 3141557 DOI: 10.1002/jez.1402470312  0.607
1988 Rougvie AE, Lis JT. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell. 54: 795-804. PMID 3136931 DOI: 10.1016/S0092-8674(88)91087-2  0.593
1988 Xiao H, Lis JT. Germline transformation used to define key features of heat-shock response elements Science. 239: 1139-1142. PMID 3125608 DOI: 10.1126/Science.3125608  0.384
1988 Sun XH, Lis JT, Wu R. The positive and negative transcriptional regulation of the Drosophila Gapdh-2 gene Genes & Development. 2: 743-753. PMID 2901386 DOI: 10.1101/Gad.2.6.743  0.51
1988 Lee HS, Simon JA, Lis JT. Structure and expression of ubiquitin genes of Drosophila melanogaster. Molecular and Cellular Biology. 8: 4727-35. PMID 2463465 DOI: 10.1128/MCB.8.11.4727  0.428
1987 Simon JA, Lis JT. A germline transformation analysis reveals flexibility in the organization of heat shock consensus elements. Nucleic Acids Research. 15: 2971-88. PMID 3562243 DOI: 10.1093/nar/15.7.2971  0.431
1987 Gilmour DS, Lis JT. Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster. Molecular and Cellular Biology. 7: 3341-4. PMID 2823128 DOI: 10.1128/Mcb.7.9.3341  0.704
1986 Gilmour DS, Lis JT. RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Molecular and Cellular Biology. 6: 3984-9. PMID 3099167 DOI: 10.1128/Mcb.6.11.3984  0.73
1986 Glaser RL, Wolfner MF, Lis JT. Spatial and temporal pattern of hsp26 expression during normal development. The Embo Journal. 5: 747-54. PMID 3086088 DOI: 10.1002/J.1460-2075.1986.Tb04277.X  0.619
1986 Hua Xiao, Lis JT. A consensus sequence polymer inhibits in vivo expression of heat shock genes Molecular and Cellular Biology. 6: 3200-3206. PMID 3023967 DOI: 10.1128/Mcb.6.9.3200  0.441
1986 Gilmour DS, Pflugfelder G, Wang JC, Lis JT. Topoisomerase I interacts with transcribed regions in Drosophila cells. Cell. 44: 401-7. PMID 3002635 DOI: 10.1016/0092-8674(86)90461-7  0.701
1986 Banzie JSD, Sinclair L, Lis JT. Expression of the major heat shock gene of Drosophilla melanogaster in Saccharomyces cerevisiae Nucleic Acids Research. 14: 3587-3601. DOI: 10.1093/nar/14.8.3587  0.471
1985 Simon JA, Sutton CA, Lobell RB, Glaser RL, Lis JT. Determinants of heat shock-induced chromosome puffing. Cell. 40: 805-17. PMID 3986904 DOI: 10.1016/0092-8674(85)90340-X  0.466
1985 Simon JA, Sutton CA, Lis JT. Localization and expression of transformed DNA sequences within heat shock puffs of Drosophila melanogaster. Chromosoma. 93: 26-30. PMID 3933923 DOI: 10.1007/BF01259442  0.464
1985 Costlow NA, Simon JA, Lis JT. A hypersensitive site in hsp70 chromatin requires adjacent not internal DNA sequence. Nature. 313: 147-9. PMID 3917557 DOI: 10.1038/313147a0  0.38
1985 Gilmour DS, Lis JT. In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster. Molecular and Cellular Biology. 5: 2009-18. PMID 3018544 DOI: 10.1128/Mcb.5.8.2009  0.735
1984 Costlow N, Lis JT. High-resolution mapping of DNase I-hypersensitive sites of Drosphila heat shock genes in Drosophila melanogaster and Saccharomyces cerevisiae Molecular and Cellular Biology. 4: 1853-1863. PMID 6436689 DOI: 10.1128/Mcb.4.9.1853  0.455
1984 Gilmour DS, Lis JT. Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. Proceedings of the National Academy of Sciences of the United States of America. 81: 4275-9. PMID 6379641 DOI: 10.1073/Pnas.81.14.4275  0.674
1983 Lis JT, Simon JA, Sutton CA. New heat shock puffs and beta-galactosidase activity resulting from transformation of Drosophila with an hsp70-lacZ hybrid gene. Cell. 35: 403-10. PMID 6418386 DOI: 10.1016/0092-8674(83)90173-3  0.398
1983 Hackett RW, Lis JT. Localization of the hsp83 transcript within a 3292 nucleotide sequence from the 63b heat shock locus of D. melanogaster Nucleic Acids Research. 11: 7011-7030. DOI: 10.1093/nar/11.20.7011  0.493
1982 Fristensky B, Lis J, Wu R. Portable microcomputer software for nucleotide sequence analysis Nucleic Acids Research. 10: 6451-6463. PMID 6184674 DOI: 10.1093/Nar/10.20.6451  0.329
1981 Lis JT, Neckameyer W, Dubensky R, Costlow N. Cloning and characterization of nine heat-shock-induced mRNAs of Drosophila melanogaster Gene. 15: 67-80. PMID 6795091 DOI: 10.1016/0378-1119(81)90105-0  0.469
1981 Lis J, Neckameyer W, Mirault ME, Artavanis-Tsakonas S, Lall P, Martin G, Schedl P. DNA sequences flanking the starts of the hsp 70 and alpha beta heat shock genes are homologous. Developmental Biology. 83: 291-300. PMID 6263741 DOI: 10.1016/0012-1606(81)90475-9  0.663
1981 Lis JT, Ish-Horowicz D, Pinchin SM. Genomic organization and transcription of the alpha beta heat shock DNA in Drosophila melanogaster. Nucleic Acids Research. 9: 5297-310. PMID 6170940 DOI: 10.1093/Nar/9.20.5297  0.314
1981 O'Connor D, Lis JT. Two closely linked transcription units within the 63B heat shock puff locus of D. melanogaster display strikingly different regulation Nucleic Acids Research. 9: 5075-5092. PMID 6118854 DOI: 10.1093/Nar/9.19.5075  0.474
1981 Hackett RW, Lis JT. DNA sequence analysis reveals extensive homologies of regions preceeding hsp70 and αβ heat shock genes in Drosophila melanogaster Proceedings of the National Academy of Sciences of the United States of America. 78: 6196-6200. DOI: 10.1073/Pnas.78.10.6196  0.435
1979 Artavanis-Tsakonas S, Schedl P, Mirault ME, Moran L, Lis J. Genes for the 70,000 dalton heat shock protein in two cloned D. melanogaster DNA segments. Cell. 17: 9-18. PMID 110461 DOI: 10.1016/0092-8674(79)90290-3  0.626
1979 Moran L, Mirault ME, Tissières A, Lis J, Schedl P, Artavanis-Tsakonas S, Gehring WJ. Physical map of two D. melanogaster DNA segments containing sequences coding for the 70,000 dalton heat shock protein. Cell. 17: 1-8. PMID 110458 DOI: 10.1016/0092-8674(79)90289-7  0.602
1978 Lis JT, Prestidge L, Hogness DS. A novel arrangement of tandemly repeated genes at a major heat shock site in D. melanogaster. Cell. 14: 901-19. PMID 99245 DOI: 10.1016/0092-8674(78)90345-8  0.693
1975 Lis JT, Schleif R. The isolation and characterization of plaque-forming arabinose transducing bacteriophage λ Journal of Molecular Biology. 95: 395-402,IN3-IN4,403-. PMID 1152060 DOI: 10.1016/0022-2836(75)90198-9  0.627
1975 Lis JT, Schleif R. Size fractionation of double-stranded DNA by precipitation with polyethylene glycol. Nucleic Acids Research. 2: 383-9. PMID 236548 DOI: 10.1093/NAR/2.3.383  0.56
1975 Schleif R, Lis JT. The regulatory region of the l-arabinose operon: A physical, genetic and physiological study Journal of Molecular Biology. 95: 417-431. PMID 168391 DOI: 10.1016/0022-2836(75)90200-4  0.611
1975 Lis JT, Schleif R. The regulatory region of the L-arabinose operon: its isolation on a 1000 base-pair fragment from DNA heteroduplexes. Journal of Molecular Biology. 95: 409-16. PMID 168390 DOI: 10.1016/0022-2836(75)90199-0  0.601
1973 Lis JT, Schleif R. Different cyclic AMP requirements for induction of the arabinose and lactose operons of Escherichia coli. Journal of Molecular Biology. 79: 149-62. PMID 4355595 DOI: 10.1016/0022-2836(73)90276-3  0.587
1971 Lis J, Schleif R. Lambda lysozyme synthesis in the absence of N protein. Virology. 45: 532-3. PMID 4937997 DOI: 10.1016/0042-6822(71)90356-4  0.543
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