J Peter Gergen - Publications

Affiliations: 
Stony Brook University, Stony Brook, NY, United States 

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Prazak L, Iwasaki Y, Kim AR, Kozlov K, King K, Gergen JP. A dual role for DNA-binding by Runt in activation and repression of transcription. Molecular Biology of the Cell. mbcE20080509. PMID 34432496 DOI: 10.1091/mbc.E20-08-0509  0.777
2020 Koromila T, Gao F, Iwasaki Y, He P, Pachter L, Gergen JP, Stathopoulos A. Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos. Elife. 9. PMID 32701060 DOI: 10.7554/Elife.59610  0.574
2020 Koromila T, Gao F, Iwasaki Y, He P, Pachter L, Gergen JP, Stathopoulos A. Author response: Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos Elife. DOI: 10.7554/Elife.59610.Sa2  0.483
2019 Bell K, Skier K, Chen KH, Gergen JP. Two pair-rule responsive enhancers regulate wingless transcription in the Drosophila blastoderm embryo. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 31837063 DOI: 10.1002/dvdy.142  0.472
2017 Mendoza-García P, Hugosson F, Fallah M, Higgins ML, Iwasaki Y, Pfeifer K, Wolfstetter G, Varshney G, Popichenko D, Gergen JP, Hens K, Deplancke B, Palmer RH. The Zic family homologue Odd-paired regulates Alk expression in Drosophila. Plos Genetics. 13: e1006617. PMID 28369060 DOI: 10.1371/Journal.Pgen.1006617  0.547
2017 Hang S, Gergen JP. Different modes of enhancer-specific regulation by Runt and Even-skipped during Drosophila segmentation. Molecular Biology of the Cell. PMID 28077616 DOI: 10.1091/Mbc.E16-09-0630  0.732
2011 Walrad PB, Hang S, Gergen JP. Hairless is a cofactor for Runt-dependent transcriptional regulation. Molecular Biology of the Cell. 22: 1364-74. PMID 21325629 DOI: 10.1091/Mbc.E10-06-0483  0.789
2010 Wang X, Hang S, Prazak L, Gergen JP. NELF potentiates gene transcription in the Drosophila embryo. Plos One. 5: e11498. PMID 20634899 DOI: 10.1371/Journal.Pone.0011498  0.781
2010 Funakoshi Y, Negishi Y, Gergen JP, Seino J, Ishii K, Lennarz WJ, Matsuo I, Ito Y, Taniguchi N, Suzuki T. Evidence for an essential deglycosylation-independent activity of PNGase in Drosophila melanogaster. Plos One. 5: e10545. PMID 20479940 DOI: 10.1371/Journal.Pone.0010545  0.399
2010 Walrad PB, Hang S, Joseph GS, Salas J, Gergen JP. Distinct contributions of conserved modules to Runt transcription factor activity. Molecular Biology of the Cell. 21: 2315-26. PMID 20462957 DOI: 10.1091/Mbc.E09-11-0953  0.794
2010 Prazak L, Fujioka M, Gergen JP. Non-additive interactions involving two distinct elements mediate sloppy-paired regulation by pair-rule transcription factors. Developmental Biology. 344: 1048-59. PMID 20435028 DOI: 10.1016/J.Ydbio.2010.04.026  0.78
2007 Wang X, Lee C, Gilmour DS, Gergen JP. Transcription elongation controls cell fate specification in the Drosophila embryo. Genes & Development. 21: 1031-6. PMID 17473169 DOI: 10.1101/gad.1521207  0.469
2007 Vanderzwan-Butler CJ, Prazak LM, Gergen JP. The HMG-box protein Lilliputian is required for Runt-dependent activation of the pair-rule gene fushi-tarazu. Developmental Biology. 301: 350-60. PMID 17137570 DOI: 10.1016/j.ydbio.2006.10.027  0.806
2006 LaLonde M, Janssens H, Yun S, Crosby J, Redina O, Olive V, Altshuller YM, Choi SY, Du G, Gergen JP, Frohman MA. A role for Phospholipase D in Drosophila embryonic cellularization. Bmc Developmental Biology. 6: 60. PMID 17156430 DOI: 10.1186/1471-213X-6-60  0.396
2005 Gilbert MM, Weaver BK, Gergen JP, Reich NC. A novel functional activator of the Drosophila JAK/STAT pathway, unpaired2, is revealed by an in vivo reporter of pathway activation. Mechanisms of Development. 122: 939-48. PMID 15925495 DOI: 10.1016/j.mod.2005.03.004  0.439
2004 van Wijnen AJ, Stein GS, Gergen JP, Groner Y, Hiebert SW, Ito Y, Liu P, Neil JC, Ohki M, Speck N. Nomenclature for Runt-related (RUNX) proteins. Oncogene. 23: 4209-10. PMID 15156174 DOI: 10.1038/Sj.Onc.1207758  0.397
2004 Swantek D, Gergen JP. Ftz modulates Runt-dependent activation and repression of segment-polarity gene transcription. Development (Cambridge, England). 131: 2281-90. PMID 15102703 DOI: 10.1242/dev.01109  0.585
2003 Vander Zwan CJ, Wheeler JC, Li LH, Tracey WD, Gergen JP. A DNA-binding-independent pathway of repression by the Drosophila Runt protein. Blood Cells, Molecules & Diseases. 30: 207-22. PMID 12732185 DOI: 10.1016/S1079-9796(03)00026-3  0.762
2002 Wheeler JC, VanderZwan C, Xu X, Swantek D, Tracey WD, Gergen JP. Distinct in vivo requirements for establishment versus maintenance of transcriptional repression. Nature Genetics. 32: 206-10. PMID 12145660 DOI: 10.1038/ng942  0.789
2001 Rudolph MJ, Gergen JP. DNA-binding by Ig-fold proteins. Nature Structural Biology. 8: 384-6. PMID 11323707 DOI: 10.1038/87531  0.39
2000 Wheeler JC, Shigesada K, Gergen JP, Ito Y. Mechanisms of transcriptional regulation by Runt domain proteins. Seminars in Cell & Developmental Biology. 11: 369-75. PMID 11105901 DOI: 10.1006/Scdb.2000.0184  0.593
2000 Tracey WD, Ning X, Klingler M, Kramer SG, Gergen JP. Quantitative analysis of gene function in the Drosophila embryo. Genetics. 154: 273-84. PMID 10628987  0.779
1999 Kramer SG, Jinks TM, Schedl P, Gergen JP. Direct activation of Sex-lethal transcription by the Drosophila runt protein. Development (Cambridge, England). 126: 191-200. PMID 9834198  0.491
1998 Tsai CC, Kramer SG, Gergen JP. Pair-rule gene runt restricts orthodenticle expression to the presumptive head of the Drosophila embryo. Developmental Genetics. 23: 35-44. PMID 9706692 DOI: 10.1002/(SICI)1520-6408(1998)23:1<35::AID-DVG4>3.0.CO;2-7  0.532
1998 Tracey WD, Pepling ME, Horb ME, Thomsen GH, Gergen JP. A Xenopus homologue of aml-1 reveals unexpected patterning mechanisms leading to the formation of embryonic blood. Development (Cambridge, England). 125: 1371-80. PMID 9502719  0.711
1997 Aronson BD, Fisher AL, Blechman K, Caudy M, Gergen JP. Groucho-dependent and -independent repression activities of Runt domain proteins. Molecular and Cellular Biology. 17: 5581-7. PMID 9271433  0.322
1996 Duffy JB, Wells J, Gergen JP. Dosage-sensitive maternal modifiers of the drosophila segmentation gene runt. Genetics. 142: 839-52. PMID 8849891  0.71
1996 Klingler M, Soong J, Butler B, Gergen JP. Disperse versus compact elements for the regulation of runt stripes in Drosophila. Developmental Biology. 177: 73-84. PMID 8660878 DOI: 10.1006/dbio.1996.0146  0.512
1996 Golling G, Li L, Pepling M, Stebbins M, Gergen JP. Drosophila homologs of the proto-oncogene product PEBP2/CBF beta regulate the DNA-binding properties of Runt. Molecular and Cellular Biology. 16: 932-42. PMID 8622696  0.322
1995 Pepling ME, Gergen JP. Conservation and function of the transcriptional regulatory protein Runt. Proceedings of the National Academy of Sciences of the United States of America. 92: 9087-91. PMID 7568078 DOI: 10.1073/pnas.92.20.9087  0.382
1994 Tsai C, Gergen JP. Gap gene properties of the pair-rule gene runt during Drosophila segmentation. Development (Cambridge, England). 120: 1671-83. PMID 8050373  0.546
1994 Duffy JB, Gergen JP. Sex, segments, and the central nervous system: common genetic mechanisms of cell fate determination. Advances in Genetics. 31: 1-28. PMID 8036992 DOI: 10.1016/S0065-2660(08)60394-6  0.511
1993 Klingler M, Gergen JP. Regulation of runt transcription by Drosophila segmentation genes. Mechanisms of Development. 43: 3-19. PMID 8240970 DOI: 10.1016/0925-4773(93)90019-T  0.577
1992 Butler BA, Soong J, Gergen JP. The Drosophila segmentation gene runt has an extended cis-regulatory region that is required for vital expression at other stages of development. Mechanisms of Development. 39: 17-28. PMID 1336975 DOI: 10.1016/0925-4773(92)90022-C  0.594
1991 Duffy JB, Kania MA, Gergen JP. Expression and function of the Drosophila gene runt in early stages of neural development. Development (Cambridge, England). 113: 1223-30. PMID 1811938  0.663
1991 Duffy JB, Gergen JP. The Drosophila segmentation gene runt acts as a position-specific numerator element necessary for the uniform expression of the sex-determining gene Sex-lethal. Genes & Development. 5: 2176-87. PMID 1748277  0.65
1990 Kania MA, Bonner AS, Duffy JB, Gergen JP. The Drosophila segmentation gene runt encodes a novel nuclear regulatory protein that is also expressed in the developing nervous system. Genes & Development. 4: 1701-13. PMID 2249771  0.671
1988 Gergen JP, Butler BA. Isolation of the Drosophila segmentation gene runt and analysis of its expression during embryogenesis. Genes & Development. 2: 1179-93. PMID 2847961  0.441
1987 Gergen JP. Drosophila segmentation genes and blastoderm cell identities Bioessays. 6: 61-66. DOI: 10.1002/BIES.950060205  0.503
1986 Gergen JP, Wieschaus EF. Localized requirements for gene activity in segmentation of Drosophila embryos: analysis of armadillo, fused, giant and unpaired mutations in mosaic embryos. Roux's Archives of Developmental Biology : the Official Organ of the Edbo. 195: 49-62. PMID 28305277 DOI: 10.1007/BF00444041  0.639
1986 Gergen JP, Wieschaus E. Dosage requirements for runt in the segmentation of Drosophila embryos. Cell. 45: 289-99. PMID 3084105 DOI: 10.1016/0092-8674(86)90393-4  0.639
1986 Gergen JP, Wieschaus EF. Localized requirements for gene activity in segmentation of Drosophila embryos: analysis of armadillo, fused, giant and unpaired mutations in mosaic embryos Roux's Archives of Developmental Biology. 195: 49-62. DOI: 10.1007/BF00444041  0.625
1985 Gergen JP, Wieschaus EF. The localized requirements for a gene affecting segmentation in Drosophila: analysis of larvae mosaic for runt. Developmental Biology. 109: 321-35. PMID 3996753 DOI: 10.1016/0012-1606(85)90459-2  0.649
1981 Gergen JP, Loewenberg JY, Wensink PC. tRNA2Lys gene clusters in Drosophila. Journal of Molecular Biology. 147: 475-99. PMID 6792363 DOI: 10.1016/0022-2836(81)90396-X  0.373
1981 Sharp S, DeFranco D, Silberklang M, Hosbach HA, Schmidt T, Kubli E, Gergen JP, Wensink PC, Söll D. The initiator tRNA genes of Drosophila melanogaster: evidence for a tRNA pseudogene. Nucleic Acids Research. 9: 5867-82. PMID 6273811 DOI: 10.1093/Nar/9.22.5867  0.362
1980 Barnett T, Pachl C, Gergen JP, Wensink PC. The isolation and characterization of Drosophila yolk protein genes. Cell. 21: 729-38. PMID 6777047 DOI: 10.1016/0092-8674(80)90436-5  0.465
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