Iain Cartwright - Related publications

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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Xia B, Yan Y, Baron M, Wagner F, Barkley D, Chiodin M, Kim SY, Keefe DL, Alukal JP, Boeke JD, Yanai I. Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell. 180: 248-262.e21. PMID 31978344 DOI: 10.1016/j.cell.2019.12.015   
2020 Di Stefano M, Di Giovanni F, Pozharskaia V, Gomar-Alba M, Baù D, Carey LB, Marti-Renom MA, Mendoza M. Impact of Chromosome Fusions on 3D Genome Organization and Gene Expression in Budding Yeast. Genetics. PMID 31907200 DOI: 10.1534/genetics.119.302978   
2020 Feldmann A, Dimitrova E, Kenney A, Lastuvkova A, Klose RJ. CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions. Nucleic Acids Research. PMID 31996894 DOI: 10.1093/nar/gkaa064   
2020 Castellanos M, Mothi N, Muñoz V. Eukaryotic transcription factors can track and control their target genes using DNA antennas. Nature Communications. 11: 540. PMID 31992709 DOI: 10.1038/s41467-019-14217-8   
2020 Shell Cox J, Van Dyke MW. General and Genomic DNA-Binding Specificity for the HB8 Transcription Factor TTHB023. Biomolecules. 10. PMID 31935968 DOI: 10.3390/biom10010094   
2020 Sun CH, Weng SC, Wu JH, Tung SY, Su LH, Lin MH, Lee GA. DNA topoisomerase IIIβ promotes cyst generation by inducing cyst wall protein gene expression in . Open Biology. 10: 190228. PMID 32019477 DOI: 10.1098/rsob.190228   
2020 Halfon MS. Silencers, Enhancers, and the Multifunctional Regulatory Genome. Trends in Genetics : Tig. PMID 31918861 DOI: 10.1016/j.tig.2019.12.005   
2020 Zhang Y, Huang J, Li X, Fang C, Wang L. Identification of Functional Transcriptional Binding Sites within Chicken Gene Promoter and Screening Its Regulators. Genes. 11. PMID 32050731 DOI: 10.3390/genes11020186   
2020 Wei D, Raza SHA, Zhang J, Wang X, Khan R, Ma Y, Zhang G, Luoreng Z, Zan L. Characterization of the promoter region of the bovine 3 gene: Roles of SREBF2 and PPARG. Physiological Genomics. PMID 32036767 DOI: 10.1152/physiolgenomics.00091.2019   
2020 Chang AY, Liao BY. Reduced translational efficiency of eukaryotic genes after duplication events. Molecular Biology and Evolution. PMID 31904835 DOI: 10.1093/molbev/msz309   
2020 Ma L, Muhammad T, Wang H, Du G, Sakhawat A, Wei Y, Ali Khan A, Cong X, Huang Y. Putative promoters within gene bodies control exon expression via TET1-mediated H3K36 methylation. Journal of Cellular Physiology. PMID 31994732 DOI: 10.1002/jcp.29566   
2020 Wang G, Cheng H, Li M, Zhang C, Deng W, Li T. Selection and Validation of Reliable Reference Genes for Tolypocladium guangdongense Gene Expression Analysis under Differentially Developmental Stages and Temperature Stresses. Gene. 144380. PMID 31978511 DOI: 10.1016/j.gene.2020.144380   
2020 Wang X, Goldstein DB. Enhancer Domains Predict Gene Pathogenicity and Inform Gene Discovery in Complex Disease. American Journal of Human Genetics. 106: 215-233. PMID 32032514 DOI: 10.1016/j.ajhg.2020.01.012   
2020 Blake LE, Roux J, Hernando-Herraez I, Banovich N, Garcia Perez R, Hsiao CJ, Eres I, Cuevas C, Marques-Bonet T, Gilad Y. A comparison of gene expression and DNA methylation patterns across tissues and species. Genome Research. PMID 31953346 DOI: 10.1101/gr.254904.119   
2020 Bushman FD. Retroviral Insertional Mutagenesis in Humans: Evidence for Four Genetic Mechanisms Promoting Expansion of Cell Clones. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 31951833 DOI: 10.1016/j.ymthe.2019.12.009   
2020 Hofvander J, Jo VY, Fletcher CDM, Puls F, Flucke U, Nilsson J, Magnusson L, Mertens F. PHF1 fusions cause distinct gene expression and chromatin accessibility profiles in ossifying fibromyxoid tumors and mesenchymal cells. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. PMID 31932680 DOI: 10.1038/s41379-020-0457-8   
2020 Mavropoulos Papoudas S, Papanikolaou N, Nikolaou C. Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks. Computational and Structural Biotechnology Journal. 18: 220-229. PMID 32021663 DOI: 10.1016/j.csbj.2020.01.001   
2020 Ma F, Liu Z, Kang Y, Quan J. Genome-Wide Identification of Gene in Rainbow Trout () and Their Regulated Expression in Response to Heat Stress. Dna and Cell Biology. PMID 31977244 DOI: 10.1089/dna.2019.4936   
2020 Atack JM, Guo C, Yang L, Zhou Y, Jennings MP. DNA sequence repeats identify numerous Type I restriction-modification systems that are potential epigenetic regulators controlling phase-variable regulons; phasevarions. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 34: 1038-1051. PMID 31914596 DOI: 10.1096/fj.201901536RR   
2020 Lee TA, Bailey-Serres J. Conserved and nuanced hierarchy of gene regulatory response to hypoxia. The New Phytologist. PMID 31953954 DOI: 10.1111/nph.16437   
2020 Keele GR, Quach BC, Israel JW, Chappell GA, Lewis L, Safi A, Simon JM, Cotney P, Crawford GE, Valdar W, Rusyn I, Furey TS. Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation. Plos Genetics. 16: e1008537. PMID 31961859 DOI: 10.1371/journal.pgen.1008537   
2020 Piedra FA, Qiu X, Teng MN, Avadhanula V, Machado AA, Kim DK, Hixson J, Bahl J, Piedra PA. Non-gradient and genotype-dependent patterns of RSV gene expression. Plos One. 15: e0227558. PMID 31923213 DOI: 10.1371/journal.pone.0227558   
2020 Donczew R, Warfield L, Pacheco D, Erijman A, Hahn S. Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA. Elife. 9. PMID 31913117 DOI: 10.7554/eLife.50109   
2020 Panchy NL, Lloyd JP, Shiu SH. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data. Bmc Genomics. 21: 159. PMID 32054475 DOI: 10.1186/s12864-020-6554-8   
2020 Schachtschneider KM, Welge ME, Auvil LS, Chaki S, Rund LA, Madsen O, Elmore MRP, Johnson RW, Groenen MAM, Schook LB. Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults. Genes. 11. PMID 32033187 DOI: 10.3390/genes11020162   
2020 Wu X, Zhou Y, Yao D, Iqbal S, Gao Z, Zhang Z. DNA methylation of LDOX gene contributes to the floral colour variegation in peach. Journal of Plant Physiology. 246: 153116. PMID 31981816 DOI: 10.1016/j.jplph.2020.153116   
2020 You SH, Lee YS, Chang YJ, Lin CY, Wang TH, Chang YL. Gene expression profiling of amniotic fluid mesenchymal stem cells of monozygotic twins discordant for trisomy 21. Gene. 144461. PMID 32057927 DOI: 10.1016/j.gene.2020.144461   
2020 Chen F, Fu Q, Pu L, Hou Z, Xu Z, Zhang P, Deng T, Pang C, Liang X, Lu Y, Zhang M. Maternal transcription profiles at different stages for the development of early embryo in buffalo. Reproduction in Domestic Animals = Zuchthygiene. PMID 31971628 DOI: 10.1111/rda.13644   
2020 Wu L, Li J, Li Z, Zhang F, Tan X. Transcriptomic Analyses of 'Huaxin' Leaf Reveal Candidate Genes Related to Long-Term Cold Stress. International Journal of Molecular Sciences. 21. PMID 32013013 DOI: 10.3390/ijms21030846   
2020 Yi S, Lin Q, Zhang X, Wang J, Miao Y, Tan N. Selection and Validation of Appropriate Reference Genes for Quantitative RT-PCR Analysis in Diels Based on Transcriptome Data. Biomed Research International. 2020: 5824841. PMID 31998793 DOI: 10.1155/2020/5824841   
2020 Li K, Liu Y, Cao H, Zhang Y, Gu Z, Liu X, Yu A, Kaphle P, Dickerson KE, Ni M, Xu J. Interrogation of enhancer function by enhancer-targeting CRISPR epigenetic editing. Nature Communications. 11: 485. PMID 31980609 DOI: 10.1038/s41467-020-14362-5   
2020 Hilgarth RS, Lanigan TM. Optimization of overlap extension PCR for efficient transgene construction. Methodsx. 7: 100759. PMID 32021819 DOI: 10.1016/j.mex.2019.12.001   
2020 Fan Y, Jiang W, Ran F, Luo R, An L, Hang H. An efficient Exogenous Gene Insertion Site in CHO Cells with High Transcription Level to Enhance AID Induced Mutation. Biotechnology Journal. e1900313. PMID 31975519 DOI: 10.1002/biot.201900313   
2020 Yuan Y, Zhang B, Tang X, Zhang J, Lin J. Comparative Transcriptome Analysis of Different Species Reveals Active Ingredients-Related Genes and Pathways. International Journal of Molecular Sciences. 21. PMID 32013237 DOI: 10.3390/ijms21030861   
2020 Zhang J, Burnaevskiy N, Annis J, Han W, Hou D, Ladd P, Lee L, Mendenhall AR, Oshima J, Martin GM. Cell-to-Cell Variation in Gene Expression for Cultured Human Cells is Controlled in Trans by Diverse Genes: Implications for the Pathobiology of Aging. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 31957802 DOI: 10.1093/gerona/glaa027   
2020 Long X, Lu J, Kav NNV, Qin Y, Fang Y. Identification and evaluation of suitable reference genes for gene expression analysis in rubber tree leaf. Molecular Biology Reports. PMID 32020426 DOI: 10.1007/s11033-020-05288-8   
2020 Zheng T, Nakamoto A, Kumano G. H3K27me3 suppresses sister-lineage somatic gene expression in late embryonic germline cells of the ascidian, Halocynthia roretzi. Developmental Biology. PMID 31904374 DOI: 10.1016/j.ydbio.2019.12.017   
2020 Camino EM, Weinstein ML, List MP, Vellky JE, Rebeiz M, Williams TM. Red Light/Green Light, a Dual Fluorescent Protein Reporter System To Study Enhancer-Promoter Specificity in . G3 (Bethesda, Md.). PMID 31900331 DOI: 10.1534/g3.119.401033   
2020 Jackson CA, Castro DM, Saldi GA, Bonneau R, Gresham D. Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments. Elife. 9. PMID 31985403 DOI: 10.7554/eLife.51254   
2020 Liang L, He Z, Yu H, Wang E, Zhang X, Zhang B, Zhang C, Liang Z. Selection and Validation of Reference Genes for Gene Expression Studies in Codonopsis pilosula Based on Transcriptome Sequence Data. Scientific Reports. 10: 1362. PMID 31992780 DOI: 10.1038/s41598-020-58328-5   
2020 Lee BR, Rengaraj D, Choi HJ, Han JY. A novel F-box domain containing cyclin F like gene is required for maintaining the genome stability and survival of chicken primordial germ cells. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 34: 1001-1017. PMID 31914591 DOI: 10.1096/fj.201901294R   
2020 Cui Y, Su Y, Wang J, Jia B, Wu M, Pei W, Zhang J, Yu J. Genome-Wide Characterization and Analysis of Gene Family in Two Cultivated Allopolyploid Cotton Species: Sequence Variation, Association with Seed Oil Content, and the Role of . International Journal of Molecular Sciences. 21. PMID 32013234 DOI: 10.3390/ijms21030863   
2020 Ban M, Liao W, Baker A, Compston A, Thorpe J, Molyneux P, Fraser M, Khadake J, Jones J, Coles A, Sawcer S. Transcript specific regulation of expression influences susceptibility to multiple sclerosis. European Journal of Human Genetics : Ejhg. PMID 31932686 DOI: 10.1038/s41431-019-0569-0   
2020 Kim TO, Han YK, Yi JM. Hypermethylated promoters of tumor suppressor genes were identified in Crohn's disease patients. Intestinal Research. PMID 32019290 DOI: 10.5217/ir.2019.00105   
2020 Han P, Liu Q, Xiang J. Monitoring methylation-driven genes as prognostic biomarkers in patients with lung squamous cell cancer. Oncology Letters. 19: 707-716. PMID 31897186 DOI: 10.3892/ol.2019.11163   
2020 Li Q, Lu Z, Jin M, Fei X, Quan K, Liu Y, Ma L, Chu M, Wang H, Wei C. Verification and Analysis of Sheep Tail Type-Associated Gene Polymorphisms. Animals : An Open Access Journal From Mdpi. 10. PMID 31935823 DOI: 10.3390/ani10010089   
2020 Ahn SJ, Oh HW, Corcoran J, Kim JA, Park KC, Park CG, Choi MY. Sex-biased gene expression in antennae of Drosophila suzukii. Archives of Insect Biochemistry and Physiology. e21660. PMID 31994766 DOI: 10.1002/arch.21660   
2020 Liu Y, Zhu Q, Li L, Wang W, Zhang G. Identification of HSF1 Target Genes Involved in Thermal Stress in the Pacific Oyster Crassostrea gigas by ChIP-seq. Marine Biotechnology (New York, N.Y.). PMID 31965439 DOI: 10.1007/s10126-019-09942-6   
2020 Li M, Xie F, He Q, Li J, Liu J, Sun B, Luo Y, Zhang Y, Chen Q, Zhang F, Gong R, Wang Y, Wang X, Tang H. Expression Analysis of XTH in Stem Swelling of Stem Mustard and Selection of Reference Genes. Genes. 11. PMID 31968559 DOI: 10.3390/genes11010113   
2020 van der Burg CA, Pavasovic A, Gilding EK, Pelzer ES, Surm JM, Smith HL, Walsh TP, Prentis PJ. The Rapid Regenerative Response of a Model Sea Anemone Species Exaiptasia pallida Is Characterised by Tissue Plasticity and Highly Coordinated Cell Communication. Marine Biotechnology (New York, N.Y.). PMID 32016679 DOI: 10.1007/s10126-020-09951-w