David Gilmour - Publications


56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Li J, Gilmour DS. Reconstitution of factor-dependent, promoter proximal pausing in Drosophila nuclear extracts. Methods in Molecular Biology (Clifton, N.J.). 1276: 133-52. PMID 25665561 DOI: 10.1007/978-1-4939-2392-2_7  1
2014 Achary BG, Campbell KM, Co IS, Gilmour DS. RNAi screen in Drosophila larvae identifies histone deacetylase 3 as a positive regulator of the hsp70 heat shock gene expression during heat shock. Biochimica Et Biophysica Acta. 1839: 355-63. PMID 24607507 DOI: 10.1016/j.bbagrm.2014.02.018  1
2013 Natarajan M, Schiralli Lester GM, Lee C, Missra A, Wasserman GA, Steffen M, Gilmour DS, Henderson AJ. Negative elongation factor (NELF) coordinates RNA polymerase II pausing, premature termination, and chromatin remodeling to regulate HIV transcription. The Journal of Biological Chemistry. 288: 25995-6003. PMID 23884411 DOI: 10.1074/Jbc.M113.496489  1
2013 Li J, Liu Y, Rhee HS, Ghosh SK, Bai L, Pugh BF, Gilmour DS. Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing. Molecular Cell. 50: 711-22. PMID 23746353 DOI: 10.1016/J.Molcel.2013.05.016  1
2013 Li J, Gilmour DS. Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor. The Embo Journal. 32: 1829-41. PMID 23708796 DOI: 10.1038/emboj.2013.111  1
2013 Lagha M, Bothma JP, Esposito E, Ng S, Stefanik L, Tsui C, Johnston J, Chen K, Gilmour DS, Zeitlinger J, Levine MS. Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo. Cell. 153: 976-87. PMID 23706736 DOI: 10.1016/J.Cell.2013.04.045  1
2011 Cernilogar FM, Onorati MC, Kothe GO, Burroughs AM, Parsi KM, Breiling A, Lo Sardo F, Saxena A, Miyoshi K, Siomi H, Siomi MC, Carninci P, Gilmour DS, Corona DF, Orlando V. Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila. Nature. 480: 391-5. PMID 22056986 DOI: 10.1038/Nature10492  1
2011 Fay A, Misulovin Z, Li J, Schaaf CA, Gause M, Gilmour DS, Dorsett D. Cohesin selectively binds and regulates genes with paused RNA polymerase. Current Biology : Cb. 21: 1624-34. PMID 21962715 DOI: 10.1016/j.cub.2011.08.036  1
2011 Ghosh SK, Missra A, Gilmour DS. Negative elongation factor accelerates the rate at which heat shock genes are shut off by facilitating dissociation of heat shock factor. Molecular and Cellular Biology. 31: 4232-43. PMID 21859888 DOI: 10.1128/MCB.05930-11  1
2011 Kruk JA, Dutta A, Fu J, Gilmour DS, Reese JC. The multifunctional Ccr4-Not complex directly promotes transcription elongation. Genes & Development. 25: 581-93. PMID 21406554 DOI: 10.1101/Gad.2020911  1
2011 Li J, Gilmour DS. Promoter proximal pausing and the control of gene expression. Current Opinion in Genetics & Development. 21: 231-5. PMID 21324670 DOI: 10.1016/j.gde.2011.01.010  1
2010 Missra A, Gilmour DS. Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex. Proceedings of the National Academy of Sciences of the United States of America. 107: 11301-6. PMID 20534440 DOI: 10.1073/pnas.1000681107  1
2009 Gilmour DS, Fan R. Detecting transcriptionally engaged RNA polymerase in eukaryotic cells with permanganate genomic footprinting. Methods (San Diego, Calif.). 48: 368-74. PMID 19272453 DOI: 10.1016/j.ymeth.2009.02.020  1
2009 Gilmour DS. Promoter proximal pausing on genes in metazoans. Chromosoma. 118: 1-10. PMID 18830703 DOI: 10.1007/s00412-008-0182-4  1
2008 Gilchrist DA, Nechaev S, Lee C, Ghosh SK, Collins JB, Li L, Gilmour DS, Adelman K. NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly. Genes & Development. 22: 1921-33. PMID 18628398 DOI: 10.1101/gad.1643208  1
2008 Li P, Yao H, Zhang Z, Li M, Luo Y, Thompson PR, Gilmour DS, Wang Y. Regulation of p53 target gene expression by peptidylarginine deiminase 4. Molecular and Cellular Biology. 28: 4745-58. PMID 18505818 DOI: 10.1128/Mcb.01747-07  1
2008 Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF. Nucleosome organization in the Drosophila genome. Nature. 453: 358-62. PMID 18408708 DOI: 10.1038/Nature06929  1
2008 Lee C, Li X, Hechmer A, Eisen M, Biggin MD, Venters BJ, Jiang C, Li J, Pugh BF, Gilmour DS. NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila. Molecular and Cellular Biology. 28: 3290-300. PMID 18332113 DOI: 10.1128/Mcb.02224-07  1
2008 Klatt A, Zhang Z, Kalantari P, Hankey PA, Gilmour DS, Henderson AJ. The receptor tyrosine kinase RON represses HIV-1 transcription by targeting RNA polymerase II processivity. Journal of Immunology (Baltimore, Md. : 1950). 180: 1670-7. PMID 18209063 DOI: 10.4049/Jimmunol.180.3.1670  1
2008 Gilmour DS, Fan R. Derailing the locomotive: transcription termination. The Journal of Biological Chemistry. 283: 661-4. PMID 17998201 DOI: 10.1074/jbc.R700032200  1
2007 Zhang Z, Klatt A, Henderson AJ, Gilmour DS. Transcription termination factor Pcf11 limits the processivity of Pol II on an HIV provirus to repress gene expression. Genes & Development. 21: 1609-14. PMID 17606639 DOI: 10.1101/Gad.1542707  1
2007 Wang X, Lee C, Gilmour DS, Gergen JP. Transcription elongation controls cell fate specification in the Drosophila embryo. Genes & Development. 21: 1031-6. PMID 17473169 DOI: 10.1101/gad.1521207  1
2007 Zhang Z, Klatt A, Gilmour DS, Henderson AJ. Negative elongation factor NELF represses human immunodeficiency virus transcription by pausing the RNA polymerase II complex. The Journal of Biological Chemistry. 282: 16981-8. PMID 17442680 DOI: 10.1074/Jbc.M610688200  1
2006 Zhang Z, Gilmour DS. Pcf11 is a termination factor in Drosophila that dismantles the elongation complex by bridging the CTD of RNA polymerase II to the nascent transcript. Molecular Cell. 21: 65-74. PMID 16387654 DOI: 10.1016/j.molcel.2005.11.002  1
2005 Zhang Z, Fu J, Gilmour DS. CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11. Genes & Development. 19: 1572-80. PMID 15998810 DOI: 10.1101/gad.1296305  1
2005 Wang YV, Tang H, Gilmour DS. Identification in vivo of different rate-limiting steps associated with transcriptional activators in the presence and absence of a GAGA element. Molecular and Cellular Biology. 25: 3543-52. PMID 15831460 DOI: 10.1128/MCB.25.9.3543-3552.2005  1
2005 Wu CH, Lee C, Fan R, Smith MJ, Yamaguchi Y, Handa H, Gilmour DS. Molecular characterization of Drosophila NELF. Nucleic Acids Research. 33: 1269-79. PMID 15741180 DOI: 10.1093/Nar/Gki274  1
2004 Zhang Z, Wu CH, Gilmour DS. Analysis of polymerase II elongation complexes by native gel electrophoresis. Evidence for a novel carboxyl-terminal domain-mediated termination mechanism. The Journal of Biological Chemistry. 279: 23223-8. PMID 15056674 DOI: 10.1074/jbc.M402956200  1
2003 Wu CH, Yamaguchi Y, Benjamin LR, Horvat-Gordon M, Washinsky J, Enerly E, Larsson J, Lambertsson A, Handa H, Gilmour D. NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes & Development. 17: 1402-14. PMID 12782658 DOI: 10.1101/Gad.1091403  1
2002 Leibovitch BA, Lu Q, Benjamin LR, Liu Y, Gilmour DS, Elgin SC. GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter. Molecular and Cellular Biology. 22: 6148-57. PMID 12167709 DOI: 10.1128/MCB.22.17.6148-6157.2002  1
2001 Franklin Pugh B, Gilmour DS. Genome-wide analysis of protein-DNA interactions in living cells Genome Biology. 2. PMID 11305945 DOI: 10.1186/Gb-2001-2-4-Reviews1013  1
2001 Wu CH, Madabusi L, Nishioka H, Emanuel P, Sypes M, Arkhipova I, Gilmour DS. Analysis of core promoter sequences located downstream from the TATA element in the hsp70 promoter from Drosophila melanogaster. Molecular and Cellular Biology. 21: 1593-602. PMID 11238896 DOI: 10.1128/MCB.21.5.1593-1602.2001  1
2000 Tang H, Liu Y, Madabusi L, Gilmour DS. Promoter-proximal pausing on the hsp70 promoter in Drosophila melanogaster depends on the upstream regulator Molecular and Cellular Biology. 20: 2569-2580. PMID 10713179 DOI: 10.1128/MCB.20.7.2569-2580.2000  1
1999 Cryderman DE, Tang H, Bell C, Gilmour DS, Wallrath LL. Heterochromatic silencing of Drosophila heat shock genes acts at the level of promoter potentiation. Nucleic Acids Research. 27: 3364-70. PMID 10454645 DOI: 10.1093/nar/27.16.3364  1
1999 Cartwright IL, Cryderman DE, Gilmour DS, Pile LA, Wallrath LL, Weber JA, Elgin SC. Analysis of Drosophila chromatin structure in vivo. Methods in Enzymology. 304: 462-96. PMID 10372377 DOI: 10.1016/S0076-6879(99)04028-8  1
1998 Benjamin LR, Gilmour DS. Nucleosomes are not necessary for promoter-proximal pausing in vitro on the Drosophila hsp70 promoter Nucleic Acids Research. 26: 1051-1055. PMID 9461467 DOI: 10.1093/nar/26.4.1051  1
1997 Weber JA, Taxman DJ, Lu Q, Gilmour DS. Molecular architecture of the hsp70 promoter after deletion of the TATA box or the upstream regulation region Molecular and Cellular Biology. 17: 3799-3808. PMID 9199313  1
1996 Li B, Weber JA, Chen Y, Greenleaf AL, Gilmour DS. Analyses of promoter-proximal pausing by RNA polymerase II on the hsp70 heat shock gene promoter in a Drosophila nuclear extract Molecular and Cellular Biology. 16: 5433-5443. PMID 8816456 DOI: 10.1128/Mcb.16.10.5433  1
1995 Weber JA, Gilmour DS. Genomic footprinting of the hsp70 and histone H3 promoters in Drosophila embryos reveals novel protein-DNA interactions Nucleic Acids Research. 23: 3327-3334. PMID 7667110  1
1995 Gilmour DS. UV cross-linking of DNA-protein complexes in vitro Methods in Molecular and Cellular Biology. 5: 162-168.  1
1994 Lu Q, Wallrath LL, Emanuel PA, Elgin SC, Gilmour DS. Insensitivity of the present hsp26 chromatin structure to a TATA box mutation in Drosophila. The Journal of Biological Chemistry. 269: 15906-11. PMID 8195245  1
1994 Sypes MA, Gilmour DS. Protein/DNA crosslinking of a TFIID complex reveals novel interactions downstream of the transcription start Nucleic Acids Research. 22: 807-814. PMID 8139922  1
1994 Purnell BA, Emanuel PA, Gilmour DS. TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes Genes and Development. 8: 830-842. PMID 7926771  1
1993 Purnell BA, Gilmour DS. Contribution of sequences downstream of the TATA element to a protein-DNA complex containing the TATA-binding protein Molecular and Cellular Biology. 13: 2593-2603. PMID 8455632  1
1993 Emanuel PA, Gilmour DS. Transcription factor TFIID recognizes DNA sequences downstream of the TATA element in the Hsp70 heat shock gene Proceedings of the National Academy of Sciences of the United States of America. 90: 8449-8453. PMID 8378317  1
1991 Gilmour DS, Rougvie AE, Lis JT. Protein-DNA cross-linking as a means to determine the distribution of proteins on DNA in vivo. Methods in Cell Biology. 35: 369-81. PMID 1664030 DOI: 10.1016/S0091-679X(08)60580-4  1
1990 Gilmour DS, Dietz TJ, Elgin SC. UV cross-linking identifies four polypeptides that require the TATA box to bind to the Drosophila hsp70 promoter. Molecular and Cellular Biology. 10: 4233-8. PMID 2370864 DOI: 10.1128/Mcb.10.8.4233  1
1989 Gilmour DS, Thomas GH, Elgin SC. Drosophila nuclear proteins bind to regions of alternating C and T residues in gene promoters. Science (New York, N.Y.). 245: 1487-90. PMID 2781290 DOI: 10.1126/Science.2781290  1
1988 Gilmour DS, Dietz TJ, Elgin SC. TATA box-dependent protein-DNA interactions are detected on heat shock and histone gene promoters in nuclear extracts derived from Drosophila melanogaster embryos. Molecular and Cellular Biology. 8: 3204-14. PMID 2905425 DOI: 10.1128/Mcb.8.8.3204  1
1987 Gilmour DS, Elgin SC. Localization of specific topoisomerase I interactions within the transcribed region of active heat shock genes by using the inhibitor camptothecin. Molecular and Cellular Biology. 7: 141-8. PMID 3031452 DOI: 10.1128/Mcb.7.1.141  1
1987 Gilmour DS, Lis JT. Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster. Molecular and Cellular Biology. 7: 3341-4. PMID 2823128 DOI: 10.1128/Mcb.7.9.3341  1
1987 Gilmour DS, Elgin SC. Association of topoisomerase I with transcriptionally active loci in Drosophila. Nci Monographs : a Publication of the National Cancer Institute. 17-21. PMID 2819725  1
1986 Gilmour DS, Lis JT. RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Molecular and Cellular Biology. 6: 3984-9. PMID 3099167 DOI: 10.1128/Mcb.6.11.3984  1
1986 Gilmour DS, Pflugfelder G, Wang JC, Lis JT. Topoisomerase I interacts with transcribed regions in Drosophila cells. Cell. 44: 401-7. PMID 3002635 DOI: 10.1016/0092-8674(86)90461-7  1
1985 Gilmour DS, Lis JT. In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster. Molecular and Cellular Biology. 5: 2009-18. PMID 3018544 DOI: 10.1128/Mcb.5.8.2009  1
1984 Gilmour DS, Lis JT. Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. Proceedings of the National Academy of Sciences of the United States of America. 81: 4275-9. PMID 6379641 DOI: 10.1073/Pnas.81.14.4275  1
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