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Steven Henikoff - Publications

Fred Hutchinson Cancer Research Center, Seattle, WA, United States 

322 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ahmad K, Brahma S, Henikoff S. Response to "Learning from chromatin reconstitution: Pioneering factors enabling nucleosome remodelers". Molecular Cell. PMID 38604173 DOI: 10.1016/j.molcel.2024.03.020  0.488
2024 Henikoff S, Henikoff JG, Paranal RM, Greene JE, Zheng Y, Russell ZR, Szulzewsky F, Kugel S, Holland EC, Ahmad K. Direct measurement of RNA Polymerase II hypertranscription in cancer FFPE samples. Biorxiv : the Preprint Server For Biology. PMID 38559075 DOI: 10.1101/2024.02.28.582647  0.534
2023 Janssens DH, Duran M, Otto DJ, Kirkey D, Yi JS, Meshinchi S, Sarthy JF, Ahmad K, Henikoff S. KMT2A oncoproteins induce epigenetic resistance to targeted therapies. Biorxiv : the Preprint Server For Biology. PMID 38234854 DOI: 10.1101/2023.12.29.573681  0.517
2023 Brahma S, Henikoff S. The BAF chromatin remodeler synergizes with RNA polymerase II and transcription factors to evict nucleosomes. Nature Genetics. PMID 38049663 DOI: 10.1038/s41588-023-01603-8  0.827
2023 Anderson JT, Henikoff S, Ahmad K. Chromosome-specific maturation of the epigenome in the male germline. Elife. 12. PMID 38032818 DOI: 10.7554/eLife.89373  0.574
2023 Ahmad K, Brahma S, Henikoff S. Epigenetic pioneering by SWI/SNF family remodelers. Molecular Cell. PMID 38016477 DOI: 10.1016/j.molcel.2023.10.045  0.837
2023 Janssens DH, Greene JE, Wu SJ, Codomo CA, Minot SS, Furlan SN, Ahmad K, Henikoff S. Scalable single-cell profiling of chromatin modifications with sciCUT&Tag. Nature Protocols. PMID 37935964 DOI: 10.1038/s41596-023-00905-9  0.549
2023 Anderson J, Henikoff S, Ahmad K. Chromosome-specific maturation of the epigenome in the Drosophila male germline. Biorxiv : the Preprint Server For Biology. PMID 37873332 DOI: 10.1101/2023.02.24.529909  0.575
2023 Henikoff S, Henikoff JG, Ahmad K, Paranal RM, Janssens DH, Russell ZR, Szulzewsky F, Kugel S, Holland EC. Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag. Nature Communications. 14: 5930. PMID 37739938 DOI: 10.1038/s41467-023-41666-z  0.51
2023 Kaonis S, Smith JL, Katiyar N, Merrill M, Hyelkma T, Namciu S, Le Q, Babaeva E, Ishida T, Morris SM, Girard E, Furuyama S, Ries R, Bernstein I, Meshinchi S, ... Henikoff S, et al. Chromatin Profiling of CBFA2T3-GLIS2 AMLs Identifies Key Transcription Factor Dependencies and BRG1 Inhibition as a Novel Therapeutic Strategy. Biorxiv : the Preprint Server For Biology. PMID 37693371 DOI: 10.1101/2023.08.30.555598  0.72
2023 Leichter SM, Henikoff S. β-catenin repositions over time. Cell Systems. 14: 549-550. PMID 37473727 DOI: 10.1016/j.cels.2023.06.008  0.779
2023 Wooten M, Takushi B, Ahmad K, Henikoff S. Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. Science Advances. 9: eadg3257. PMID 37315134 DOI: 10.1126/sciadv.adg3257  0.814
2023 Jana S, Brahma S, Arora S, Wladyka CL, Hoang P, Blinka S, Hough R, Horn JL, Liu Y, Wang LJ, Depeille P, Smith E, Montgomery RB, Lee JK, Haffner MC, ... ... Henikoff S, et al. Transcriptional-translational conflict is a barrier to cellular transformation and cancer progression. Cancer Cell. PMID 37084735 DOI: 10.1016/j.ccell.2023.03.021  0.779
2023 Wooten M, Takushi B, Ahmad K, Henikoff S. Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. Biorxiv : the Preprint Server For Biology. PMID 36712130 DOI: 10.1101/2023.01.09.523323  0.819
2023 Brahma S, Henikoff S. RNA Polymerase II, the BAF remodeler and transcription factors synergize to evict nucleosomes. Biorxiv : the Preprint Server For Biology. PMID 36711459 DOI: 10.1101/2023.01.22.525083  0.827
2022 Ahmad K, Henikoff S. The embryo as a for the epigenome. Faculty Reviews. 11: 40. PMID 36644296 DOI: 10.12703/r/11-40  0.602
2022 De Sarkar N, Patton RD, Doebley AL, Hanratty B, Adil M, Kreitzman AJ, Sarthy JF, Ko M, Brahma S, Meers MP, Janssens DH, Ang LS, Coleman IM, Bose A, Dumpit RF, ... ... Henikoff S, et al. Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes. Cancer Discovery. PMID 36399432 DOI: 10.1158/2159-8290.CD-22-0692  0.805
2022 Bryson TD, De Ioannes P, Valencia-Sánchez MI, Henikoff JG, Talbert PB, Lee R, La Scola B, Armache KJ, Henikoff S. A giant virus genome is densely packaged by stable nucleosomes within virions. Molecular Cell. PMID 36370708 DOI: 10.1016/j.molcel.2022.10.020  0.406
2022 Meers MP, Llagas G, Janssens DH, Codomo CA, Henikoff S. Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag. Nature Biotechnology. PMID 36316484 DOI: 10.1038/s41587-022-01522-9  0.775
2022 Khyzha N, Henikoff S, Ahmad K. Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation. Nature Methods. PMID 36192462 DOI: 10.1038/s41592-022-01618-9  0.534
2022 Henikoff S, Ahmad K. In situ tools for chromatin structural epigenomics. Protein Science : a Publication of the Protein Society. e4458. PMID 36170035 DOI: 10.1002/pro.4458  0.596
2022 Talbert PB, Armache KJ, Henikoff S. Viral histones: pickpocket's prize or primordial progenitor? Epigenetics & Chromatin. 15: 21. PMID 35624484 DOI: 10.1186/s13072-022-00454-7  0.381
2022 Brahma S, Henikoff S. CUT&RUN Profiling of the Budding Yeast Epigenome. Methods in Molecular Biology (Clifton, N.J.). 2477: 129-147. PMID 35524116 DOI: 10.1007/978-1-0716-2257-5_9  0.827
2022 Talbert PB, Henikoff S. The genetics and epigenetics of satellite centromeres. Genome Research. 32: 608-615. PMID 35361623 DOI: 10.1101/gr.275351.121  0.338
2022 Ahmad K, Henikoff S, Ramachandran S. Managing the Steady State Chromatin Landscape by Nucleosome Dynamics. Annual Review of Biochemistry. PMID 35303789 DOI: 10.1146/annurev-biochem-032620-104508  0.716
2022 Janssens DH, Otto DJ, Meers MP, Setty M, Ahmad K, Henikoff S. CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells. Genome Biology. 23: 81. PMID 35300717 DOI: 10.1186/s13059-022-02642-w  0.775
2021 Bartlett DA, Dileep V, Handa T, Ohkawa Y, Kimura H, Henikoff S, Gilbert DM. High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq). The Journal of Cell Biology. 220. PMID 34783858 DOI: 10.1083/jcb.202103078  0.349
2021 Janssens DH, Meers MP, Wu SJ, Babaeva E, Meshinchi S, Sarthy JF, Ahmad K, Henikoff S. Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia. Nature Genetics. PMID 34663924 DOI: 10.1038/s41588-021-00941-9  0.812
2021 Ahmad K, Henikoff S. The H3.3K27M oncohistone antagonizes reprogramming in Drosophila. Plos Genetics. 17: e1009225. PMID 34280185 DOI: 10.1371/journal.pgen.1009225  0.541
2021 Henikoff S, Henikoff JG, Ahmad K. Simplified Epigenome Profiling Using Antibody-tethered Tagmentation. Bio-Protocol. 11: e4043. PMID 34250209 DOI: 10.21769/BioProtoc.4043  0.545
2021 Thakur J, Packiaraj J, Henikoff S. Sequence, Chromatin and Evolution of Satellite DNA. International Journal of Molecular Sciences. 22. PMID 33919233 DOI: 10.3390/ijms22094309  0.327
2021 Wu SJ, Furlan SN, Mihalas AB, Kaya-Okur HS, Feroze AH, Emerson SN, Zheng Y, Carson K, Cimino PJ, Keene CD, Sarthy JF, Gottardo R, Ahmad K, Henikoff S, Patel AP. Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression. Nature Biotechnology. PMID 33846646 DOI: 10.1038/s41587-021-00865-z  0.529
2021 Talbert PB, Henikoff S. The Yin and Yang of Histone Marks in Transcription. Annual Review of Genomics and Human Genetics. PMID 33781079 DOI: 10.1146/annurev-genom-120220-085159  0.382
2021 Talbert PB, Henikoff S. Histone variants at a glance. Journal of Cell Science. 134. PMID 33771851 DOI: 10.1242/jcs.244749  0.384
2021 Chew GL, Bleakley M, Bradley RK, Malik HS, Henikoff S, Molaro A, Sarthy J. Short H2A histone variants are expressed in cancer. Nature Communications. 12: 490. PMID 33473122 DOI: 10.1038/s41467-020-20707-x  0.811
2020 Molaro A, Wood AJ, Janssens D, Kindelay SM, Eickbush MT, Wu S, Singh P, Muller CH, Henikoff S, Malik HS. Biparental contributions of the H2A.B histone variant control embryonic development in mice. Plos Biology. 18: e3001001. PMID 33362208 DOI: 10.1371/journal.pbio.3001001  0.803
2020 Henikoff S, Henikoff JG, Kaya-Okur HS, Ahmad K. Efficient chromatin accessibility mapping by nucleosome-tethered tagmentation. Elife. 9. PMID 33191916 DOI: 10.7554/eLife.63274  0.584
2020 Kaya-Okur HS, Janssens DH, Henikoff JG, Ahmad K, Henikoff S. Efficient low-cost chromatin profiling with CUT&Tag. Nature Protocols. PMID 32913232 DOI: 10.1038/s41596-020-0373-x  0.611
2020 Sarthy JF, Meers MP, Janssens DH, Henikoff JG, Feldman H, Paddison PJ, Lockwood CM, Vitanza NA, Olson JM, Ahmad K, Henikoff S. Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones. Elife. 9. PMID 32902381 DOI: 10.7554/Elife.61090  0.802
2020 Thakur J, Henikoff S. Architectural RNA in chromatin organization. Biochemical Society Transactions. PMID 32897323 DOI: 10.1042/BST20191226  0.316
2020 Henikoff S, Ahmad K. Evolution: Heterochromatin Diversity in Early-Branching Land Plants. Current Biology : Cb. 30: R161-R163. PMID 32097641 DOI: 10.1016/j.cub.2019.12.044  0.518
2020 Zeineldin M, Federico S, Chen X, Fan Y, Xu B, Stewart E, Zhou X, Jeon J, Griffiths L, Nguyen R, Norrie J, Easton J, Mulder H, Yergeau D, Liu Y, ... ... Henikoff S, et al. MYCN amplification and ATRX mutations are incompatible in neuroblastoma. Nature Communications. 11: 913. PMID 32060267 DOI: 10.1038/S41467-020-14682-6  0.738
2020 Talbert PB, Henikoff S. What makes a centromere? Experimental Cell Research. 111895. PMID 32035948 DOI: 10.1016/j.yexcr.2020.111895  0.448
2019 Resnick R, Wong CJ, Hamm DC, Bennett SR, Skene PJ, Hake SB, Henikoff S, van der Maarel SM, Tapscott SJ. DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression. Cell Reports. 29: 1812-1820.e5. PMID 31722199 DOI: 10.1016/j.celrep.2019.10.025  0.372
2019 Brahma S, Henikoff S. Epigenome Regulation by Dynamic Nucleosome Unwrapping. Trends in Biochemical Sciences. PMID 31630896 DOI: 10.1016/J.Tibs.2019.09.003  0.839
2019 Sarthy JF, Henikoff S. Bringing Oncohistones into the Fold. Cancer Discovery. 9: 1346-1348. PMID 31575564 DOI: 10.1158/2159-8290.CD-19-0839  0.411
2019 Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, et al. EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England). 146. PMID 31558570 DOI: 10.1242/Dev.178962  0.795
2019 Chereji RV, Bryson TD, Henikoff S. Quantitative MNase-seq accurately maps nucleosome occupancy levels. Genome Biology. 20: 198. PMID 31519205 DOI: 10.1186/s13059-019-1815-z  0.317
2019 Henikoff S, Ahmad K. Nucleosomes remember where they were. Proceedings of the National Academy of Sciences of the United States of America. PMID 31511423 DOI: 10.1073/pnas.1914581116  0.625
2019 Mathsyaraja H, Freie B, Cheng PF, Babaeva E, Catchpole JT, Janssens D, Henikoff S, Eisenman RN. deletion destabilizes MYC protein and abrogates Eµ- lymphomagenesis. Genes & Development. PMID 31395740 DOI: 10.1101/Gad.325878.119  0.333
2019 Meers MP, Tenenbaum D, Henikoff S. Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling. Epigenetics & Chromatin. 12: 42. PMID 31300027 DOI: 10.1186/S13072-019-0287-4  0.741
2019 Meers MP, Janssens DH, Henikoff S. Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded. Molecular Cell. PMID 31253573 DOI: 10.1016/J.Molcel.2019.05.025  0.775
2019 Meers MP, Bryson TD, Henikoff JG, Henikoff S. Improved CUT&RUN chromatin profiling tools. Elife. 8. PMID 31232687 DOI: 10.7554/Elife.46314  0.741
2019 Kaya-Okur HS, Wu SJ, Codomo CA, Pledger ES, Bryson TD, Henikoff JG, Ahmad K, Henikoff S. CUT&Tag for efficient epigenomic profiling of small samples and single cells. Nature Communications. 10: 1930. PMID 31036827 DOI: 10.1038/s41467-019-09982-5  0.57
2019 Sarthy JF, Henikoff S, Ahmad K. Chromatin Bottlenecks in Cancer. Trends in Cancer. 5: 183-194. PMID 30898265 DOI: 10.1016/j.trecan.2019.01.003  0.582
2019 Talbert PB, Meers MP, Henikoff S. Old cogs, new tricks: the evolution of gene expression in a chromatin context. Nature Reviews. Genetics. PMID 30886348 DOI: 10.1038/S41576-019-0105-7  0.802
2019 Brahma S, Henikoff S. RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast. Molecular Cell. 73: 238-249.e3. PMID 30554944 DOI: 10.1016/J.Molcel.2018.10.046  0.821
2019 Meers MP, Bryson TD, Henikoff JG, Henikoff S. Author response: Improved CUT&RUN chromatin profiling tools Elife. DOI: 10.7554/Elife.46314.018  0.739
2019 Chereji RV, Bryson TD, Henikoff S. Quantitative Measurement of Nucleosome Occupancy and DNA Accessibility Biophysical Journal. 116: 73a. DOI: 10.1016/j.bpj.2018.11.436  0.371
2018 Janssens DH, Wu SJ, Sarthy JF, Meers MP, Myers CH, Olson JM, Ahmad K, Henikoff S. Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs. Epigenetics & Chromatin. 11: 74. PMID 30577869 DOI: 10.1186/S13072-018-0243-8  0.828
2018 Ahmad K, Henikoff S. No strand left behind. Science (New York, N.Y.). 361: 1311-1312. PMID 30262484 DOI: 10.1126/science.aav0871  0.459
2018 Ramachandran S, Henikoff S. MINCE-Seq: Mapping In Vivo Nascent Chromatin with EdU and Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1832: 159-168. PMID 30073526 DOI: 10.1007/978-1-4939-8663-7_8  0.642
2018 Henikoff S, Ramachandran S. Pioneers Invade the Nucleosomal Landscape. Molecular Cell. 71: 193-194. PMID 30028998 DOI: 10.1016/J.Molcel.2018.07.004  0.543
2018 Talbert PB, Henikoff S. Transcribing Centromeres: Noncoding RNAs and Kinetochore Assembly. Trends in Genetics : Tig. PMID 29871772 DOI: 10.1016/j.tig.2018.05.001  0.422
2018 Skene PJ, Henikoff JG, Henikoff S. Targeted in situ genome-wide profiling with high efficiency for low cell numbers. Nature Protocols. 13: 1006-1019. PMID 29651053 DOI: 10.1038/nprot.2018.015  0.435
2018 Chereji RV, Ramachandran S, Bryson TD, Henikoff S. Precise genome-wide mapping of single nucleosomes and linkers in vivo. Genome Biology. 19: 19. PMID 29426353 DOI: 10.1186/S13059-018-1398-0  0.612
2018 Thakur J, Henikoff S. Unexpected conformational variations of the human centromeric chromatin complex. Genes & Development. PMID 29386331 DOI: 10.1101/gad.307736.117  0.307
2018 Kasinathan S, Henikoff S. Non-B-form DNA is enriched at centromeres. Molecular Biology and Evolution. PMID 29365169 DOI: 10.1093/molbev/msy010  0.392
2017 Ramachandran S, Ahmad K, Henikoff S. Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates. Molecular Cell. PMID 29225036 DOI: 10.1016/J.Molcel.2017.11.015  0.746
2017 Henikoff S, Thakur J, Kasinathan S, Talbert PB. Remarkable Evolutionary Plasticity of Centromeric Chromatin. Cold Spring Harbor Symposia On Quantitative Biology. PMID 29196559 DOI: 10.1101/sqb.2017.82.033605  0.49
2017 Henikoff S. Structural Biology: Probing the Origins of Chromatin. Current Biology : Cb. 27: R1118-R1120. PMID 29065294 DOI: 10.1016/j.cub.2017.08.063  0.416
2017 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 8: 15723. PMID 28580964 DOI: 10.1038/ncomms15723  0.699
2017 Kasinathan S, Zentner GE, Xin B, Rohs R, Henikoff S. Correspondence: Reply to 'DNA shape is insufficient to explain binding'. Nature Communications. 8: 15644. PMID 28580953 DOI: 10.1038/ncomms15644  0.682
2017 Ramachandran S, Ahmad K, Henikoff S. Capitalizing on disaster: Establishing chromatin specificity behind the replication fork. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28133760 DOI: 10.1002/Bies.201600150  0.754
2017 Skene PJ, Henikoff S. An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites. Elife. 6. PMID 28079019 DOI: 10.7554/eLife.21856  0.344
2016 Talbert PB, Henikoff S. Histone variants on the move: substrates for chromatin dynamics. Nature Reviews. Molecular Cell Biology. PMID 27924075 DOI: 10.1038/nrm.2016.148  0.486
2016 Grünberg S, Henikoff S, Hahn S, Zentner GE. Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters. The Embo Journal. PMID 27797823 DOI: 10.15252/embj.201695020  0.723
2016 Henikoff S. Mechanisms of Nucleosome Dynamics In Vivo. Cold Spring Harbor Perspectives in Medicine. PMID 27503998 DOI: 10.1101/cshperspect.a026666  0.455
2016 Henikoff S, Greally JM. Epigenetics, cellular memory and gene regulation. Current Biology : Cb. 26: R644-8. PMID 27458904 DOI: 10.1016/J.Cub.2016.06.011  0.334
2016 Thakur J, Henikoff S. CENPT bridges adjacent CENPA nucleosomes on young human α-satellite dimers. Genome Research. PMID 27384170 DOI: 10.1101/gr.204784.116  0.42
2016 Ramachandran S, Henikoff S. Transcriptional Regulators Compete with Nucleosomes Post-replication. Cell. PMID 27062929 DOI: 10.1016/J.Cell.2016.02.062  0.677
2016 Ramachandran S, Henikoff S. Nucleosome dynamics during chromatin remodeling in vivo. Nucleus (Austin, Tex.). 1-7. PMID 26933790 DOI: 10.1080/19491034.2016.1149666  0.674
2016 Drinnenberg IA, Henikoff S, Malik HS. Evolutionary Turnover of Kinetochore Proteins: A Ship of Theseus? Trends in Cell Biology. PMID 26877204 DOI: 10.1016/J.Tcb.2016.01.005  0.782
2016 Skene PJ, Henikoff S. Author response: An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites Elife. DOI: 10.7554/Elife.21856.033  0.333
2016 Henikoff S, Weber CM, Teves SS, Ramachandran S. Abstract IA09: Nucleosome barriers to transcription Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-Ia09  0.826
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 10264. PMID 26669278 DOI: 10.1038/ncomms10264  0.674
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 8733. PMID 26490019 DOI: 10.1038/ncomms9733  0.725
2015 Thakur J, Talbert PB, Henikoff S. Inner Kinetochore Protein Interactions with Regional Centromeres of Fission Yeast. Genetics. 201: 543-61. PMID 26275423 DOI: 10.1534/genetics.115.179788  0.432
2015 Ramachandran S, Henikoff S. Replicating Nucleosomes. Science Advances. 1. PMID 26269799 DOI: 10.1126/sciadv.1500587  0.59
2015 Henikoff S. The Genetic Map Enters Its Second Century. Genetics. 200: 671-4. PMID 26170439 DOI: 10.1534/genetics.115.178434  0.385
2015 Skene PJ, Henikoff S. A simple method for generating high-resolution maps of genome-wide protein binding. Elife. 4. PMID 26079792 DOI: 10.7554/eLife.09225  0.407
2015 Zentner GE, Henikoff S. Epigenome editing made easy. Nature Biotechnology. 33: 606-7. PMID 26057978 DOI: 10.1038/nbt.3248  0.695
2015 Steiner FA, Henikoff S. Diversity in the organization of centromeric chromatin. Current Opinion in Genetics & Development. 31: 28-35. PMID 25956076 DOI: 10.1016/j.gde.2015.03.010  0.464
2015 Henikoff JG, Thakur J, Kasinathan S, Henikoff S. A unique chromatin complex occupies young α-satellite arrays of human centromeres. Science Advances. 1. PMID 25927077 DOI: 10.1126/sciadv.1400234  0.411
2015 Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K. Mapping regulatory factors by immunoprecipitation from native chromatin. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 110: 21.31.1-21.31.25. PMID 25827087 DOI: 10.1002/0471142727.mb2131s110  0.783
2015 Williams BP, Pignatta D, Henikoff S, Gehring M. Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat. Plos Genetics. 11: e1005142. PMID 25826366 DOI: 10.1371/Journal.Pgen.1005142  0.343
2015 Henikoff S, Smith MM. Histone variants and epigenetics. Cold Spring Harbor Perspectives in Biology. 7: a019364. PMID 25561719 DOI: 10.1101/cshperspect.a019364  0.47
2015 Ramachandran S, Zentner GE, Henikoff S. Asymmetric nucleosomes flank promoters in the budding yeast genome. Genome Research. 25: 381-90. PMID 25491770 DOI: 10.1101/Gr.182618.114  0.808
2015 Steiner FA, Henikoff S. Cell type-specific affinity purification of nuclei for chromatin profiling in whole animals. Methods in Molecular Biology (Clifton, N.J.). 1228: 3-14. PMID 25311117 DOI: 10.1007/978-1-4939-1680-1_1  0.35
2015 Skene PJ, Henikoff S. Author response: A simple method for generating high-resolution maps of genome-wide protein binding Elife. DOI: 10.7554/Elife.09225.011  0.314
2015 Henikoff S. New Approaches for Mapping Epigenome Dynamics Blood. 126: SCI-21-SCI-21. DOI: 10.1182/BLOOD.V126.23.SCI-21.SCI-21  0.524
2014 Teves SS, Weber CM, Henikoff S. Transcribing through the nucleosome. Trends in Biochemical Sciences. 39: 577-86. PMID 25455758 DOI: 10.1016/J.Tibs.2014.10.004  0.8
2014 Kasinathan S, Henikoff S. 5-Aza-CdR delivers a gene body blow. Cancer Cell. 26: 449-51. PMID 25314073 DOI: 10.1016/j.ccell.2014.09.004  0.342
2014 Zentner GE, Henikoff S. High-resolution digital profiling of the epigenome. Nature Reviews. Genetics. 15: 814-27. PMID 25297728 DOI: 10.1038/nrg3798  0.74
2014 Drinnenberg IA, deYoung D, Henikoff S, Malik HS. Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects. Elife. 3. PMID 25247700 DOI: 10.7554/Elife.03676  0.811
2014 Talbert PB, Henikoff S. Environmental responses mediated by histone variants. Trends in Cell Biology. 24: 642-50. PMID 25150594 DOI: 10.1016/j.tcb.2014.07.006  0.449
2014 Skene PJ, Henikoff S. Histones push the envelope. Nature Structural & Molecular Biology. 21: 651-2. PMID 25093523 DOI: 10.1038/nsmb.2864  0.427
2014 Teves SS, Henikoff S. DNA torsion as a feedback mediator of transcription and chromatin dynamics. Nucleus (Austin, Tex.). 5: 211-8. PMID 24819949 DOI: 10.4161/Nucl.29086  0.764
2014 Skene PJ, Hernandez AE, Groudine M, Henikoff S. The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1. Elife. 3: e02042. PMID 24737864 DOI: 10.7554/eLife.02042  0.373
2014 Henikoff S, Ramachandran S, Krassovsky K, Bryson TD, Codomo CA, Brogaard K, Widom J, Wang JP, Henikoff JG. The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo. Elife. 3: e01861. PMID 24737863 DOI: 10.7554/Elife.01861  0.814
2014 Steiner FA, Henikoff S. Holocentromeres are dispersed point centromeres localized at transcription factor hotspots. Elife. 3: e02025. PMID 24714495 DOI: 10.7554/eLife.02025  0.421
2014 Weber CM, Henikoff S. Histone variants: dynamic punctuation in transcription. Genes & Development. 28: 672-82. PMID 24696452 DOI: 10.1101/gad.238873.114  0.524
2014 Orsi GA, Kasinathan S, Hughes KT, Saminadin-Peter S, Henikoff S, Ahmad K. High-resolution mapping defines the cooperative architecture of Polycomb response elements. Genome Research. 24: 809-20. PMID 24668908 DOI: 10.1101/gr.163642.113  0.652
2014 Weber CM, Ramachandran S, Henikoff S. Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase. Molecular Cell. 53: 819-30. PMID 24606920 DOI: 10.1016/J.Molcel.2014.02.014  0.633
2014 Krassovsky K, Henikoff S. Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster. Bmc Genomics. 15: 105. PMID 24498936 DOI: 10.1186/1471-2164-15-105  0.828
2014 Codomo CA, Furuyama T, Henikoff S. CENP-A octamers do not confer a reduction in nucleosome height by AFM. Nature Structural & Molecular Biology. 21: 4-5. PMID 24389542 DOI: 10.1038/nsmb.2743  0.363
2014 Yang F, Teves SS, Kemp CJ, Henikoff S. Doxorubicin, DNA torsion, and chromatin dynamics. Biochimica Et Biophysica Acta. 1845: 84-9. PMID 24361676 DOI: 10.1016/J.Bbcan.2013.12.002  0.756
2014 Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nature Methods. 11: 203-9. PMID 24336359 DOI: 10.1038/nmeth.2766  0.792
2014 Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nature Structural & Molecular Biology. 21: 88-94. PMID 24317489 DOI: 10.1038/Nsmb.2723  0.765
2014 Drinnenberg IA, deYoung D, Henikoff S, Malik HS. Author response: Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects Elife. DOI: 10.7554/Elife.03676.020  0.755
2014 Skene PJ, Hernandez AE, Groudine M, Henikoff S. Author response: The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1 Elife. DOI: 10.7554/Elife.02042.018  0.369
2014 Steiner FA, Henikoff S. Author response: Holocentromeres are dispersed point centromeres localized at transcription factor hotspots Elife. DOI: 10.7554/Elife.02025.025  0.302
2014 Henikoff S, Ramachandran S, Krassovsky K, Bryson TD, Codomo CA, Brogaard K, Widom J, Wang J, Henikoff JG. Author response: The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo Elife. DOI: 10.7554/Elife.01861.026  0.79
2013 Zhang T, Talbert PB, Zhang W, Wu Y, Yang Z, Henikoff JG, Henikoff S, Jiang J. The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres. Proceedings of the National Academy of Sciences of the United States of America. 110: E4875-83. PMID 24191062 DOI: 10.1073/pnas.1319548110  0.455
2013 Zentner GE, Henikoff S. Mot1 redistributes TBP from TATA-containing to TATA-less promoters. Molecular and Cellular Biology. 33: 4996-5004. PMID 24144978 DOI: 10.1128/MCB.01218-13  0.708
2013 Talbert PB, Henikoff S. Phylogeny as the basis for naming histones. Trends in Genetics : Tig. 29: 499-500. PMID 23876620 DOI: 10.1016/j.tig.2013.06.009  0.389
2013 Skene PJ, Henikoff S. Histone variants in pluripotency and disease. Development (Cambridge, England). 140: 2513-24. PMID 23715545 DOI: 10.1242/dev.091439  0.494
2013 Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/Gb-2013-14-4-113  0.332
2013 Furuyama T, Codomo CA, Henikoff S. Reconstitution of hemisomes on budding yeast centromeric DNA. Nucleic Acids Research. 41: 5769-83. PMID 23620291 DOI: 10.1093/nar/gkt314  0.441
2013 Yang F, Kemp CJ, Henikoff S. Doxorubicin enhances nucleosome turnover around promoters. Current Biology : Cb. 23: 782-7. PMID 23602475 DOI: 10.1016/J.Cub.2013.03.043  0.445
2013 Zentner GE, Tsukiyama T, Henikoff S. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. Plos Genetics. 9: e1003317. PMID 23468649 DOI: 10.1371/journal.pgen.1003317  0.738
2013 Zentner GE, Henikoff S. Regulation of nucleosome dynamics by histone modifications. Nature Structural & Molecular Biology. 20: 259-66. PMID 23463310 DOI: 10.1038/nsmb.2470  0.745
2013 Henikoff S, Grosveld F. Epigenetics & chromatin: interactions and processes. Epigenetics & Chromatin. 6: 2. PMID 23442888 DOI: 10.1186/1756-8935-6-2  0.373
2013 Teves SS, Henikoff S. The heat shock response: A case study of chromatin dynamics in gene regulation. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 91: 42-8. PMID 23442140 DOI: 10.1139/Bcb-2012-0075  0.766
2013 Cooper JL, Henikoff S, Comai L, Till BJ. TILLING and ecotilling for rice. Methods in Molecular Biology (Clifton, N.J.). 956: 39-56. PMID 23135843 DOI: 10.1007/978-1-62703-194-3_4  0.323
2013 Zentner GE, Tsukiyama T, Henikoff S. ISWI and CHD chromatin remodelers bind to promoters but act in gene bodies Epigenetics & Chromatin. 6: 1-1. DOI: 10.1186/1756-8935-6-S1-O29  0.5
2013 Yang F, Kemp CJ, Henikoff S. Abstract PR11: Doxorubicin enhances nucleosome turnover around active gene promoters Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Pr11  0.456
2012 Talbert PB, Henikoff S. Chromatin: packaging without nucleosomes. Current Biology : Cb. 22: R1040-3. PMID 23257187 DOI: 10.1016/j.cub.2012.10.052  0.442
2012 Skene PJ, Henikoff S. Chromatin roadblocks to reprogramming 50 years on. Bmc Biology. 10: 83. PMID 23107587 DOI: 10.1186/1741-7007-10-83  0.404
2012 Zentner GE, Henikoff S. Surveying the epigenomic landscape, one base at a time. Genome Biology. 13: 250. PMID 23088423 DOI: 10.1186/gb4051  0.695
2012 Teves SS, Deal RB, Henikoff S. Measuring genome-wide nucleosome turnover using CATCH-IT. Methods in Enzymology. 513: 169-84. PMID 22929769 DOI: 10.1016/B978-0-12-391938-0.00007-0  0.806
2012 Sim NL, Kumar P, Hu J, Henikoff S, Schneider G, Ng PC. SIFT web server: predicting effects of amino acid substitutions on proteins. Nucleic Acids Research. 40: W452-7. PMID 22689647 DOI: 10.1093/Nar/Gks539  0.568
2012 Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Henikoff S, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7  0.761
2012 Henikoff S, Furuyama T. The unconventional structure of centromeric nucleosomes. Chromosoma. 121: 341-52. PMID 22552438 DOI: 10.1007/s00412-012-0372-y  0.445
2012 Henikoff S. Chromatin processes, epigenetic inheritance, centromere structure and function and evolution. Current Biology : Cb. 22: R106-7. PMID 22468275 DOI: 10.1016/j.cub.2011.12.014  0.386
2012 Henikoff S, Henikoff JG. "Point" centromeres of Saccharomyces harbor single centromere-specific nucleosomes. Genetics. 190: 1575-7. PMID 22234856 DOI: 10.1534/genetics.111.137711  0.412
2012 Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S. Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling. Genome Research. 22: 766-77. PMID 22219512 DOI: 10.1101/gr.131748.111  0.358
2012 Krassovsky K, Henikoff JG, Henikoff S. Tripartite organization of centromeric chromatin in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. 109: 243-8. PMID 22184235 DOI: 10.1073/Pnas.1118898109  0.842
2012 Teves SS, Henikoff S. Salt fractionation of nucleosomes for genome-wide profiling. Methods in Molecular Biology (Clifton, N.J.). 833: 421-32. PMID 22183608 DOI: 10.1007/978-1-61779-477-3_25  0.789
2011 Teves SS, Henikoff S. Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide. Genes & Development. 25: 2387-97. PMID 22085965 DOI: 10.1101/Gad.177675.111  0.772
2011 Henikoff JG, Belsky JA, Krassovsky K, MacAlpine DM, Henikoff S. Epigenome characterization at single base-pair resolution. Proceedings of the National Academy of Sciences of the United States of America. 108: 18318-23. PMID 22025700 DOI: 10.1073/Pnas.1110731108  0.817
2011 Gehring M, Missirian V, Henikoff S. Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. Plos One. 6: e23687. PMID 21858209 DOI: 10.1371/Journal.Pone.0023687  0.417
2011 Henikoff S, Shilatifard A. Histone modification: cause or cog? Trends in Genetics : Tig. 27: 389-96. PMID 21764166 DOI: 10.1016/J.Tig.2011.06.006  0.474
2011 Deal RB, Henikoff S. The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nature Protocols. 6: 56-68. PMID 21212783 DOI: 10.1038/nprot.2010.175  0.38
2011 Deal RB, Henikoff S. Histone variants and modifications in plant gene regulation. Current Opinion in Plant Biology. 14: 116-22. PMID 21159547 DOI: 10.1016/j.pbi.2010.11.005  0.521
2010 Henikoff S. Summary: The nucleus--a close-knit community of dynamic structures. Cold Spring Harbor Symposia On Quantitative Biology. 75: 607-15. PMID 21502412 DOI: 10.1101/sqb.2010.75.051  0.444
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Henikoff S, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/Science.1196914  0.458
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Henikoff S, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  0.828
2010 Weber CM, Henikoff JG, Henikoff S. H2A.Z nucleosomes enriched over active genes are homotypic. Nature Structural & Molecular Biology. 17: 1500-7. PMID 21057526 DOI: 10.1038/nsmb.1926  0.432
2010 Henikoff S, Furuyama T. Epigenetic inheritance of centromeres. Cold Spring Harbor Symposia On Quantitative Biology. 75: 51-60. PMID 21047902 DOI: 10.1101/sqb.2010.75.001  0.502
2010 Deal RB, Henikoff S. Capturing the dynamic epigenome. Genome Biology. 11: 218. PMID 20959022 DOI: 10.1186/gb-2010-11-10-218  0.419
2010 Conerly ML, Teves SS, Diolaiti D, Ulrich M, Eisenman RN, Henikoff S. Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis. Genome Research. 20: 1383-90. PMID 20709945 DOI: 10.1101/Gr.106542.110  0.827
2010 Deal RB, Henikoff S. A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Developmental Cell. 18: 1030-40. PMID 20627084 DOI: 10.1016/j.devcel.2010.05.013  0.351
2010 Deal RB, Henikoff JG, Henikoff S. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science (New York, N.Y.). 328: 1161-4. PMID 20508129 DOI: 10.1126/science.1186777  0.511
2010 Bryson TD, Weber CM, Henikoff S. Baculovirus-encoded protein expression for epigenomic profiling in Drosophila cells. Fly. 4: 258-65. PMID 20495356 DOI: 10.4161/fly.4.3.12177  0.373
2010 Talbert PB, Henikoff S. Histone variants--ancient wrap artists of the epigenome. Nature Reviews. Molecular Cell Biology. 11: 264-75. PMID 20197778 DOI: 10.1038/nrm2861  0.5
2010 Deal RB, Henikoff S. Gene regulation: A chromatin thermostat. Nature. 463: 887-8. PMID 20164913 DOI: 10.1038/463887a  0.4
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/Journal.Pgen.1000814  0.615
2010 Ooi SL, Henikoff JG, Henikoff S. A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans. Nucleic Acids Research. 38: e26. PMID 19966274 DOI: 10.1093/Nar/Gkp1090  0.483
2010 Borinstein SC, Conerly M, Dzieciatkowski S, Biswas S, Washington MK, Trobridge P, Henikoff S, Grady WM. Aberrant DNA methylation occurs in colon neoplasms arising in the azoxymethane colon cancer model. Molecular Carcinogenesis. 49: 94-103. PMID 19777566 DOI: 10.1002/Mc.20581  0.722
2009 Henikoff S, Grosveld F. Epigenetics & Chromatin celebrates its first anniversary. Epigenetics & Chromatin. 2: 13. PMID 19883496 DOI: 10.1186/1756-8935-2-13  0.436
2009 Malik HS, Henikoff S. Major evolutionary transitions in centromere complexity. Cell. 138: 1067-82. PMID 19766562 DOI: 10.1016/j.cell.2009.08.036  0.61
2009 Henikoff S. Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'. Nature Genetics. 41: 865-6. PMID 19639024 DOI: 10.1038/ng0809-865  0.474
2009 Furuyama T, Henikoff S. Centromeric nucleosomes induce positive DNA supercoils. Cell. 138: 104-13. PMID 19596238 DOI: 10.1016/j.cell.2009.04.049  0.487
2009 Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nature Protocols. 4: 1073-81. PMID 19561590 DOI: 10.1038/Nprot.2009.86  0.564
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927A  0.608
2009 De Bustos C, Ramos E, Young JM, Tran RK, Menzel U, Langford CF, Eichler EE, Hsu L, Henikoff S, Dumanski JP, Trask BJ. Tissue-specific variation in DNA methylation levels along human chromosome 1. Epigenetics & Chromatin. 2: 7. PMID 19505295 DOI: 10.1186/1756-8935-2-7  0.326
2009 Talbert PB, Henikoff S. Chromatin-based transcriptional punctuation. Genes & Development. 23: 1037-41. PMID 19417102 DOI: 10.1101/gad.1806409  0.479
2009 Gehring M, Reik W, Henikoff S. DNA demethylation by DNA repair. Trends in Genetics : Tig. 25: 82-90. PMID 19144439 DOI: 10.1016/J.Tig.2008.12.001  0.345
2009 Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Research. 19: 460-9. PMID 19088306 DOI: 10.1101/gr.087619.108  0.728
2009 Furuyama T, Henikoff S. Response: Right-Handed Half-Nucleosomes at Centromeres Cell. 139: 1217-1218. DOI: 10.1016/j.cell.2009.12.015  0.306
2009 Talbert PB, Bayes JJ, Henikoff S. Evolution of centromeres and kinetochores: A two-part fugue The Kinetochore: From Molecular Discoveries to Cancer Therapy. 193-229. DOI: 10.1007/978-0-387-69076-6_7  0.712
2008 Gehring M, Henikoff S. DNA methylation and demethylation in Arabidopsis. The Arabidopsis Book / American Society of Plant Biologists. 6: e0102. PMID 22303233 DOI: 10.1199/Tab.0102  0.402
2008 Wang H, Dalal Y, Henikoff S, Lindsay S. Single-epitope recognition imaging of native chromatin. Epigenetics & Chromatin. 1: 10. PMID 19091111 DOI: 10.1186/1756-8935-1-10  0.707
2008 Yan H, Talbert PB, Lee HR, Jett J, Henikoff S, Chen F, Jiang J. Intergenic locations of rice centromeric chromatin. Plos Biology. 6: e286. PMID 19067486 DOI: 10.1371/journal.pbio.0060286  0.472
2008 Henikoff S, Grosveld F. Welcome to epigenetics & chromatin. Epigenetics & Chromatin. 1: 1. PMID 19014662 DOI: 10.1186/1756-8935-1-1  0.475
2008 Henikoff S, Strahl BD, Warburton PE. Epigenomics: a roadmap to chromatin. Science (New York, N.Y.). 322: 853. PMID 18988822 DOI: 10.1126/Science.322.5903.853A  0.452
2008 Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456: 125-9. PMID 18815594 DOI: 10.1038/Nature07324  0.752
2008 Jones PA, Archer TK, Baylin SB, Beck S, Berger S, Bernstein BE, Carpten JD, Clark SJ, Costello JF, Doerge RW, Esteller M, Feinberg AP, Gingeras TR, Greally JM, Henikoff S, et al. Moving AHEAD with an international human epigenome project Nature. 454: 711-715. PMID 18685699 DOI: 10.1038/454711A  0.619
2008 Henikoff S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nature Reviews. Genetics. 9: 15-26. PMID 18059368 DOI: 10.1038/nrg2206  0.51
2007 Henikoff S. Nucleosomes at active promoters: unforgettable loss. Cancer Cell. 12: 407-9. PMID 17996642 DOI: 10.1016/j.ccr.2007.10.024  0.471
2007 Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns. Development (Cambridge, England). 134: 3959-65. PMID 17928417 DOI: 10.1242/Dev.001131  0.722
2007 Dalal Y, Furuyama T, Vermaak D, Henikoff S. Structure, dynamics, and evolution of centromeric nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 15974-81. PMID 17893333 DOI: 10.1073/Pnas.0707648104  0.72
2007 Dalal Y, Wang H, Lindsay S, Henikoff S. Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells. Plos Biology. 5: e218. PMID 17676993 DOI: 10.1371/Journal.Pbio.0050218  0.722
2007 Henikoff S. ENCODE and our very busy genome. Nature Genetics. 39: 817-8. PMID 17597770 DOI: 10.1038/ng0707-817  0.39
2007 Ooi SL, Henikoff S. Germline histone dynamics and epigenetics. Current Opinion in Cell Biology. 19: 257-65. PMID 17467256 DOI: 10.1016/J.Ceb.2007.04.015  0.494
2007 Till BJ, Cooper J, Tai TH, Colowit P, Greene EA, Henikoff S, Comai L. Discovery of chemically induced mutations in rice by TILLING. Bmc Plant Biology. 7: 19. PMID 17428339 DOI: 10.1186/1471-2229-7-19  0.304
2007 Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 6752-7. PMID 17409185 DOI: 10.1073/Pnas.0701861104  0.736
2007 Mito Y, Henikoff JG, Henikoff S. Histone replacement marks the boundaries of cis-regulatory domains. Science (New York, N.Y.). 315: 1408-11. PMID 17347439 DOI: 10.1126/science.1134004  0.416
2007 Gehring M, Henikoff S. DNA methylation dynamics in plant genomes. Biochimica Et Biophysica Acta. 1769: 276-86. PMID 17341434 DOI: 10.1016/J.Bbaexp.2007.01.009  0.416
2007 Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 39: 61-9. PMID 17128275 DOI: 10.1038/Ng1929  0.735
2006 Till BJ, Zerr T, Comai L, Henikoff S. A protocol for TILLING and Ecotilling in plants and animals. Nature Protocols. 1: 2465-77. PMID 17406493 DOI: 10.1038/Nprot.2006.329  0.348
2006 Dawe RK, Henikoff S. Centromeres put epigenetics in the driver's seat Trends in Biochemical Sciences. 31: 662-669. PMID 17074489 DOI: 10.1016/j.tibs.2006.10.004  0.434
2006 Talbert PB, Henikoff S. Spreading of silent chromatin: Inaction at a distance Nature Reviews Genetics. 7: 793-803. PMID 16983375 DOI: 10.1038/nrg1920  0.435
2006 Ooi SL, Priess JR, Henikoff S. Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans. Plos Genetics. 2: e97. PMID 16846252 DOI: 10.1371/Journal.Pgen.0020097  0.437
2006 Ng PC, Henikoff S. Predicting the effects of amino acid substitutions on protein function Annual Review of Genomics and Human Genetics. 7: 61-80. PMID 16824020 DOI: 10.1146/Annurev.Genom.7.080505.115630  0.557
2006 Furuyama T, Henikoff S. Biotin-tag affinity purification of a centromeric nucleosome assembly complex Cell Cycle. 5: 1269-1274. PMID 16775420 DOI: 10.4161/Cc.5.12.2889  0.444
2006 Lieb JD, Beck S, Bulyk ML, Farnham P, Hattori N, Henikoff S, Liu XS, Okumura K, Shiota K, Ushijima T, Greally JM. Applying whole-genome studies of epigenetic regulation to study human disease. Cytogenetic and Genome Research. 114: 1-15. PMID 16717444 DOI: 10.1159/000091922  0.465
2006 Furuyama T, Dalal Y, Henikoff S. Chaperone-mediated assembly of centromeric chromatin in vitro. Proceedings of the National Academy of Sciences of the United States of America. 103: 6172-7. PMID 16601098 DOI: 10.1073/Pnas.0601686103  0.711
2006 Comai L, Henikoff S. TILLING: Practical single-nucleotide mutation discovery Plant Journal. 45: 684-694. PMID 16441355 DOI: 10.1111/J.1365-313X.2006.02670.X  0.329
2006 Feinberg AP, Ohlsson R, Henikoff S. The epigenetic progenitor origin of human cancer Nature Reviews Genetics. 7: 21-33. PMID 16369569 DOI: 10.1038/nrg1748  0.328
2005 Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6: R90. PMID 16277745 DOI: 10.1186/Gb-2005-6-11-R90  0.772
2005 Yan H, Jin W, Nagaki K, Tian S, Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang J. Transcription and histone modifications in the recombination-free region spanning a rice centromere. The Plant Cell. 17: 3227-38. PMID 16272428 DOI: 10.1105/tpc.105.037945  0.473
2005 Malik HS, Henikoff S. Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster. Plos Genetics. 1: e44. PMID 16244705 DOI: 10.1371/journal.pgen.0010044  0.589
2005 Henikoff S, Ahmad K. Assembly of variant histones into chromatin. Annual Review of Cell and Developmental Biology. 21: 133-53. PMID 16212490 DOI: 10.1146/annurev.cellbio.21.012704.133518  0.646
2005 Mito Y, Henikoff JG, Henikoff S. Genome-scale profiling of histone H3.3 replacement patterns Nature Genetics. 37: 1090-1097. PMID 16155569 DOI: 10.1038/ng1637  0.455
2005 Vermaak D, Henikoff S, Malik HS. Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. Plos Genetics. 1: 96-108. PMID 16103923 DOI: 10.1371/journal.pgen.0010009  0.642
2005 Zilberman D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective silence Current Opinion in Genetics and Development. 15: 557-562. PMID 16085410 DOI: 10.1016/J.Gde.2005.07.002  0.756
2005 Henikoff S. Histone modifications: Combinational complexity or cumulative simplicity? Proceedings of the National Academy of Sciences of the United States of America. 102: 5308-5309. PMID 15811936 DOI: 10.1073/pnas.0501853102  0.464
2005 Henikoff S, Dalal Y. Centromeric chromatin: what makes it unique? Current Opinion in Genetics & Development. 15: 177-84. PMID 15797200 DOI: 10.1016/J.Gde.2005.01.004  0.725
2005 Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology : Cb. 15: 154-9. PMID 15668172 DOI: 10.1016/J.Cub.2005.01.008  0.74
2004 Henikoff S, McKittrick E, Ahmad K. Epigenetics, histone H3 variants, and the inheritance of chromatin states. Cold Spring Harbor Symposia On Quantitative Biology. 69: 235-43. PMID 16117654 DOI: 10.1101/sqb.2004.69.235  0.598
2004 Zilberman D, Henikoff S. Silencing of transposons in plant genomes: Kick them when they're down Genome Biology. 5. PMID 15575975 DOI: 10.1186/Gb-2004-5-12-249  0.729
2004 Talbert PB, Bryson TD, Henikoff S. Adaptive evolution of centromere proteins in plants and animals Journal of Biology. 3. PMID 15345035 DOI: 10.1186/Jbiol11  0.378
2004 Till BJ, Reynolds SH, Weil C, Springer N, Burtner C, Young K, Bowers E, Codomo CA, Enns LC, Odden AR, Greene EA, Comai L, Henikoff S. Discovery of induced point mutations in maize genes by TILLING. Bmc Plant Biology. 4: 12. PMID 15282033 DOI: 10.1186/1471-2229-4-12  0.322
2004 Henikoff S, Furuyama T, Ahmad K. Histone variants, nucleosome assembly and epigenetic inheritance. Trends in Genetics : Tig. 20: 320-6. PMID 15219397 DOI: 10.1016/j.tig.2004.05.004  0.644
2004 Cooper JL, Henikoff S. Adaptive evolution of the histone fold domain in centromeric histones Molecular Biology and Evolution. 21: 1712-1718. PMID 15175412 DOI: 10.1093/molbev/msh179  0.488
2004 Henikoff S, Till BJ, Comai L. TILLING. Traditional mutagenesis meets functional genomics Plant Physiology. 135: 630-636. PMID 15155876 DOI: 10.1104/Pp.104.041061  0.319
2004 Till BJ, Burtner C, Comai L, Henikoff S. Mismatch cleavage by single-strand specific nucleases Nucleic Acids Research. 32: 2632-2641. PMID 15141034 DOI: 10.1093/Nar/Gkh599  0.315
2004 Henikoff S. Visualizing gene expression: An unfolding story Cell. 116: 633-634. PMID 15006344 DOI: 10.1016/S0092-8674(04)00209-0  0.422
2004 Jin W, Melo JR, Nagaki K, Talbert PB, Henikoff S, Dawe RK, Jiang J. Maize centromeres: Organization and functional adaptation in the genetic background of oat Plant Cell. 16: 571-581. PMID 14973167 DOI: 10.1105/tpc.018937  0.424
2004 Comai L, Young K, Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Henikoff S. Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. The Plant Journal : For Cell and Molecular Biology. 37: 778-86. PMID 14871304 DOI: 10.1111/J.0960-7412.2003.01999.X  0.348
2004 McKittrick E, Gafken PR, Ahmad K, Henikoff S. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proceedings of the National Academy of Sciences of the United States of America. 101: 1525-30. PMID 14732680 DOI: 10.1073/Pnas.0308092100  0.624
2004 Nagaki K, Cheng Z, Ouyang S, Talbert PB, Kim M, Jones KM, Henikoff S, Buell CR, Jiang J. Sequencing of a rice centromere uncovers active genes. Nature Genetics. 36: 138-45. PMID 14716315 DOI: 10.1038/Ng1289  0.453
2003 Greil F, van der Kraan I, Delrow J, Smothers JF, de Wit E, Bussemaker HJ, van Driel R, Henikoff S, van Steensel B. Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location. Genes & Development. 17: 2825-38. PMID 14630943 DOI: 10.1101/Gad.281503  0.779
2003 Malik HS, Henikoff S. Phylogenomics of the nucleosome. Nature Structural Biology. 10: 882-91. PMID 14583738 DOI: 10.1038/nsb996  0.681
2003 Henikoff S, Comai L. Single-Nucleotide Mutations for Plant Functional Genomics Annual Review of Plant Biology. 54: 375-401. PMID 14502996 DOI: 10.1146/Annurev.Arplant.54.031902.135009  0.319
2003 Till BJ, Colbert T, Tompa R, Enns LC, Codomo CA, Johnson JE, Reynolds SH, Henikoff JG, Greene EA, Steine MN, Comai L, Henikoff S. High-throughput TILLING for functional genomics. Methods in Molecular Biology (Clifton, N.J.). 236: 205-20. PMID 14501067 DOI: 10.1385/1-59259-413-1:205  0.326
2003 Van Steensel B, Henikoff S. Epigenomic profiling using microarrays Biotechniques. 35: 346-357. PMID 12951776 DOI: 10.2144/03352Rv01  0.509
2003 Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Research. 31: 3812-4. PMID 12824425 DOI: 10.1093/Nar/Gkg509  0.537
2003 Henikoff S. Versatile assembler Nature. 423: 814-817. PMID 12815411 DOI: 10.1038/423814a  0.311
2003 Vermaak D, Ahmad K, Henikoff S. Maintenance of chromatin states: an open-and-shut case. Current Opinion in Cell Biology. 15: 266-74. PMID 12787767 DOI: 10.1016/S0955-0674(03)00043-7  0.619
2003 Nagaki K, Talbert PB, Zhong CX, Dawe RK, Henikoff S, Jiang J. Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres Genetics. 163: 1221-1225. PMID 12663558  0.35
2003 Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function Nucleic Acids Research. 31: 3812-3814. DOI: 10.1093/nar/gkg509  0.478
2002 Henikoff JG, Greene EA, Taylor N, Henikoff S, Pietrokovski S. Using the blocks database to recognize functional domains. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.2. PMID 18792933 DOI: 10.1002/0471250953.bi0202s00  0.303
2002 Lindquist SL, Henikoff S. Self-perpetuating structural states in biology, disease, and genetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 16377. PMID 12475994 DOI: 10.1073/pnas.212504699  0.611
2002 Malik HS, Henikoff S. Conflict begets complexity: the evolution of centromeres. Current Opinion in Genetics & Development. 12: 711-8. PMID 12433586 DOI: 10.1016/S0959-437X(02)00351-9  0.613
2002 Ahmad K, Henikoff S. Epigenetic consequences of nucleosome dynamics. Cell. 111: 281-4. PMID 12419239 DOI: 10.1016/S0092-8674(02)01081-4  0.607
2002 Vermaak D, Hayden HS, Henikoff S. Centromere targeting element within the histone fold domain of Cid. Molecular and Cellular Biology. 22: 7553-61. PMID 12370302 DOI: 10.1128/MCB.22.21.7553-7561.2002  0.388
2002 Ahmad K, Henikoff S. Histone H3 variants specify modes of chromatin assembly. Proceedings of the National Academy of Sciences of the United States of America. 99: 16477-84. PMID 12177448 DOI: 10.1073/pnas.172403699  0.621
2002 Ahmad K, Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Molecular Cell. 9: 1191-200. PMID 12086617 DOI: 10.1016/S1097-2765(02)00542-7  0.598
2002 Talbert PB, Masuelli R, Tyagi AP, Comai L, Henikoff S. Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant Plant Cell. 14: 1053-1066. PMID 12034896 DOI: 10.1105/Tpc.010425  0.415
2002 Henikoff S, Malik HS. Centromeres: selfish drivers. Nature. 417: 227. PMID 12015578 DOI: 10.1038/417227a  0.6
2002 Ng PC, Henikoff S. Accounting for human polymorphisms predicted to affect protein function Genome Research. 12: 436-446. PMID 11875032 DOI: 10.1101/Gr.212802  0.558
2002 Malik HS, Vermaak D, Henikoff S. Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone. Proceedings of the National Academy of Sciences of the United States of America. 99: 1449-54. PMID 11805302 DOI: 10.1073/pnas.032664299  0.67
2002 Tompa R, McCallum CM, Delrow J, Henikoff JG, van Steensel B, Henikoff S. Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Current Biology : Cb. 12: 65-8. PMID 11790305 DOI: 10.1016/S0960-9822(01)00622-4  0.385
2002 Ahmad K, Henikoff S. The synthesis and crystal structure of {N-dodecyl-N-pyridin-2-ylmethylene]amine} dichloro palladium and its preliminary evaluation as a catalyst for ethylene polymerization Inorganic Chemistry Communications. 5: 724-726. DOI: 10.1016/S1387-7003(02)00551-8  0.384
2001 Borodin PM, Henikoff S, Ahmad K, Malik HS. Speciation and centromere evolution [3] (multiple letters) Science. 294: 2478-2480. PMID 11770517 DOI: 10.1126/science.294.5551.2478  0.615
2001 Henikoff S, Ahmad K, Malik HS. The centromere paradox: stable inheritance with rapidly evolving DNA. Science (New York, N.Y.). 293: 1098-102. PMID 11498581 DOI: 10.1126/science.1062939  0.731
2001 Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S. High-throughput screening for induced point mutations Plant Physiology. 126: 480-484. PMID 11402178 DOI: 10.1104/Pp.126.2.480  0.316
2001 Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation Science. 292: 2077-2080. PMID 11349138 DOI: 10.1126/Science.1059745  0.773
2001 Ng PC, Henikoff S. Predicting deleterious amino acid substitutions Genome Research. 11: 863-874. PMID 11337480 DOI: 10.1101/Gr.176601  0.538
2001 Ahmad K, Henikoff S. Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila. Cell. 104: 839-47. PMID 11290322 DOI: 10.1016/S0092-8674(01)00281-1  0.579
2001 Ahmad K, Henikoff S. Centromeres are specialized replication domains in heterochromatin. The Journal of Cell Biology. 153: 101-10. PMID 11285277 DOI: 10.1083/jcb.153.1.101  0.623
2001 Smothers JF, Henikoff S. The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins Molecular and Cellular Biology. 21: 2555-2569. PMID 11259603 DOI: 10.1128/MCB.21.7.2555-2569.2001  0.344
2001 van Steensel B, Delrow J, Henikoff S. Chromatin profiling using targeted DNA adenine methyltransferase. Nature Genetics. 27: 304-8. PMID 11242113 DOI: 10.1038/85871  0.422
2001 Malik HS, Henikoff S. Adaptive evolution of Cid, a centromere-specific histone in Drosophila. Genetics. 157: 1293-8. PMID 11238413  0.635
2000 Henikoff S, Vermaak D. Bugs on drugs, go GAGAA Cell. 103: 695-698. PMID 11114325 DOI: 10.1016/S0092-8674(00)00172-0  0.31
2000 Ng PC, Henikoff JG, Henikoff S. PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane. Bioinformatics (Oxford, England). 16: 760-6. PMID 11108698 DOI: 10.1093/bioinformatics/16.9.760  0.501
2000 Malik HS, Henikoff S, Eickbush TH. Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Research. 10: 1307-18. PMID 10984449 DOI: 10.1101/Gr.145000  0.701
2000 Malik HS, Henikoff S. Dual recognition-incision enzymes might be involved in mismatch repair and meiosis. Trends in Biochemical Sciences. 25: 414-8. PMID 10973051 DOI: 10.1016/S0968-0004(00)01623-6  0.591
2000 Henikoff JG, Henikoff S. Drosophila genomic sequence annotation using the BLOCKS+ database Genome Research. 10: 543-546. PMID 10779495 DOI: 10.1101/gr.10.4.543  0.346
2000 McCallum CM, Comai L, Greene EA, Henikoff S. Targeted screening for induced mutations Nature Biotechnology. 18: 455-457. PMID 10748531 DOI: 10.1038/74542  0.315
2000 Van Steensel B, Henikoff S. Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase Nature Biotechnology. 18: 424-428. PMID 10748524 DOI: 10.1038/74487  0.457
2000 Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, et al. Comparative genomics of the eukaryotes. Science (New York, N.Y.). 287: 2204-15. PMID 10731134 DOI: 10.1126/Science.287.5461.2204  0.353
2000 Henikoff S. Heterochromatin function in complex genomes Biochimica Et Biophysica Acta - Reviews On Cancer. 1470. PMID 10656988 DOI: 10.1016/S0304-419X(99)00034-7  0.3
2000 Henikoff S, Ahmad K, Platero JS, van Steensel B. Heterochromatic deposition of centromeric histone H3-like proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 716-21. PMID 10639145 DOI: 10.1073/pnas.97.2.716  0.611
1999 Platero JS, Ahmad K, Henikoff S. A distal heterochromatic block displays centromeric activity when detached from a natural centromere. Molecular Cell. 4: 995-1004. PMID 10635324 DOI: 10.1016/S1097-2765(00)80228-2  0.55
1999 Buchwitz BJ, Ahmad K, Moore LL, Roth MB, Henikoff S. A histone-H3-like protein in C. elegans. Nature. 401: 547-8. PMID 10524621 DOI: 10.1038/44062  0.586
1999 Martienssen R, Henikoff S. The House and Garden guide to chromatin remodelling Nature Genetics. 22: 6-7. PMID 10319848 DOI: 10.1038/8708  0.331
1998 Fanti L, Dorer DR, Berloco M, Henikoff S, Pimpinelli S. Heterochromatin protein 1 binds transgene arrays. Chromosoma. 107: 286-92. PMID 9880761 DOI: 10.1007/S004120050310  0.678
1998 Csink AK, Henikoff S. Large-scale chromosomal movements during interphase progression in Drosophila. The Journal of Cell Biology. 143: 13-22. PMID 9763417 DOI: 10.1083/jcb.143.1.13  0.773
1998 Henikoff S. Conspiracy of silence among repeated transgenes Bioessays. 20: 532-535. PMID 9723001 DOI: 10.1002/(Sici)1521-1878(199807)20:7<532::Aid-Bies3>3.0.Co;2-M  0.344
1998 Csink AK, Henikoff S. Something from nothing: the evolution and utility of satellite repeats. Trends in Genetics : Tig. 14: 200-4. PMID 9613205 DOI: 10.1016/S0168-9525(98)01444-9  0.79
1998 Clark DV, Sabl JF, Henikoff S. Repetitive arrays containing a housekeeping gene have altered polytene chromosome morphology in Drosophila. Chromosoma. 107: 96-104. PMID 9601978 DOI: 10.1007/s004120050285  0.796
1998 Henikoff S, Comai L. A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis Genetics. 149: 307-318. PMID 9584105  0.327
1998 Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Research. 26: 1628-35. PMID 9512532 DOI: 10.1093/nar/26.7.1628  0.347
1998 Platero JS, Csink AK, Quintanilla A, Henikoff S. Changes in chromosomal localization of heterochromatin-binding proteins during the cell cycle in Drosophila. The Journal of Cell Biology. 140: 1297-306. PMID 9508764 DOI: 10.1083/jcb.140.6.1297  0.772
1997 Dorer DR, Henikoff S. Transgene repeat arrays interact with distant heterochromatin and cause silencing in cis and trans. Genetics. 147: 1181-90. PMID 9383061  0.618
1997 Henikoff S, Greene EA, Pietrokovski S, Bork P, Attwood TK, Hood L. Gene families: the taxonomy of protein paralogs and chimeras. Science (New York, N.Y.). 278: 609-14. PMID 9381171 DOI: 10.1126/Science.278.5338.609  0.342
1997 Martin-Morris LE, Csink AK, Dorer DR, Talbert PB, Henikoff S. Heterochromatic trans-inactivation of Drosophila white transgenes. Genetics. 147: 671-7. PMID 9335603  0.791
1997 Henikoff S, Matzke MA. Exploring and explaining epigenetic effects Trends in Genetics : Tig. 13: 293-295. PMID 9260513 DOI: 10.1016/S0168-9525(97)01219-5  0.46
1997 Pietrokovski S, Henikoff S. A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons Molecular and General Genetics. 254: 689-695. PMID 9202385 DOI: 10.1007/s004380050467  0.397
1997 Henikoff S. Nuclear organization and gene expression: Homologous pairing and long-range interactions Current Opinion in Cell Biology. 9: 388-395. PMID 9159074 DOI: 10.1016/S0955-0674(97)80012-9  0.366
1996 Sabl JF, Henikoff S. Copy number and orientation determine the susceptibility of a gene to silencing by nearby heterochromatin in Drosophila. Genetics. 142: 447-58. PMID 8852844  0.805
1996 Henikoff S. Dosage-dependent modification of position-effect variegation in Drosophila Bioessays. 18: 401-409. PMID 8639163 DOI: 10.1002/Bies.950180510  0.366
1996 Csink AK, Henikoff S. Genetic modification of heterochromatic association and nuclear organization in Drosophila. Nature. 381: 529-31. PMID 8632827 DOI: 10.1038/381529a0  0.788
1996 Wines DR, Talbert PB, Clark DV, Henikoff S. Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo. Chromosoma. 104: 332-40. PMID 8575244 DOI: 10.1007/Bf00337221  0.46
1994 Dorer DR, Henikoff S. Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila. Cell. 77: 993-1002. PMID 8020105 DOI: 10.1016/0092-8674(94)90439-1  0.67
1993 Henikoff S. Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family Trends in Biochemical Sciences. 18: 291-292. PMID 8236441 DOI: 10.1016/0968-0004(93)90037-N  0.354
1992 Clark DV, Henikoff S. Unusual organizational features of the Drosophila Gart locus are not conserved within diptera Journal of Molecular Evolution. 35: 51-59. PMID 1518084 DOI: 10.1007/BF00160260  0.381
1992 Henikoff S. Position effect and related phenomena Current Opinion in Genetics and Development. 2: 907-912. PMID 1477535 DOI: 10.1016/S0959-437X(05)80114-5  0.358
1991 Tartof KD, Henikoff S. Trans-sensing effects from Drosophila to humans. Cell. 65: 201-3. PMID 2015622 DOI: 10.1016/0092-8674(91)90153-P  0.353
1990 Henikoff S, Wallace JC, Brown JP. Finding protein similarities with nucleotide sequence databases. Methods in Enzymology. 183: 111-32. PMID 2314271 DOI: 10.1016/0076-6879(90)83009-x  0.315
1990 Endow SA, Henikoff S, Soler-Niedziela L. Mediation of meiotic and early mitotic chromosome segregation in Drosophila by a protein related to kinesin Nature. 345: 81-83. PMID 1691829 DOI: 10.1038/345081A0  0.324
1989 Henikoff S, Dreesen TD. Trans-inactivation of the Drosophila brown gene: evidence for transcriptional repression and somatic pairing dependence Proceedings of the National Academy of Sciences of the United States of America. 86: 6704-6708. PMID 2505257 DOI: 10.1073/Pnas.86.17.6704  0.382
1989 Johnson D, Henikoff S. A moveable 5' splice site in adenine phosphoribosyltransferase genes of Drosophila species Molecular and Cellular Biology. 9: 2220-2223. PMID 2501662 DOI: 10.1128/Mcb.9.5.2220  0.321
1988 Henikoff S, Haughn GW, Calvo JM, Wallace JC. A large family of bacterial activator proteins. Proceedings of the National Academy of Sciences of the United States of America. 85: 6602-6. PMID 3413113 DOI: 10.1073/Pnas.85.18.6602  0.34
1988 Dreesen TD, Johnson DH, Henikoff S. The brown protein of Drosophila melanogaster is similar to the white protein and to components of active transport complexes. Molecular and Cellular Biology. 8: 5206-15. PMID 3149712 DOI: 10.1128/mcb.8.12.5206  0.362
1988 Henikoff S, Wallace JC. Detection of protein similarities using nucleotide sequence databases Nucleic Acids Research. 16: 6191-6204. PMID 3135536 DOI: 10.1093/nar/16.13.6191  0.336
1987 Henikoff S. Unindirectional digestion with exonuclease III in DNA sequence analysis Methods in Enzymology. 155: 156-165. PMID 3323819 DOI: 10.1016/0076-6879(87)55014-5  0.339
1986 Henikoff S. The Saccharomyces cerevisiae ADE5,7 protein is homologous to overlapping Drosophila melanogaster Gart polypeptides Journal of Molecular Biology. 190: 519-528. PMID 3097325 DOI: 10.1016/0022-2836(86)90238-X  0.378
1986 Henikoff S, Keene MA, Fechtel K, Fristrom JW. Gene within a gene: nested Drosophila genes encode unrelated proteins on opposite DNA strands. Cell. 44: 33-42. PMID 3079672 DOI: 10.1016/0092-8674(86)90482-4  0.341
1984 Henikoff S. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing Gene. 28: 351-359. PMID 6235151 DOI: 10.1016/0378-1119(84)90153-7  0.384
1983 Henikoff S, Sloan JS, Kelly JD. A Drosophila metabolic gene transcript is alternatively processed Cell. 34: 405-414. PMID 6413075 DOI: 10.1016/0092-8674(83)90374-4  0.4
1983 Henikoff S. Cloning exons for mapping of transcription: Characterization of the Drosophila melanogaster alcohol dehydrogenise gene Nucleic Acids Research. 11: 4735-4752. PMID 6410356 DOI: 10.1093/nar/11.14.4735  0.406
1983 Henikoff S, Kelly JD, Cohen EH. Transcription terminates in yeast distal to a control sequence. Cell. 33: 607-14. PMID 6305514 DOI: 10.1016/0092-8674(83)90441-5  0.353
1983 Henikoff S, Furlong CE. Sequence of a Drosophila DNA segment that functions in Saccharomyces Cerevisiae and its regulation by a yeast promoter Nucleic Acids Research. 11: 789-800. PMID 6300768 DOI: 10.1093/nar/11.3.789  0.398
1981 Henikoff S. Position-effect variegation and chromosome structure of a heat shock puff in Drosophila Chromosoma. 83: 381-393. PMID 6168446 DOI: 10.1007/BF00327360  0.313
1977 Henikoff S, Meselson M. Transcription at two heat shock loci in Drosophila Cell. 12: 441-451. PMID 410501 DOI: 10.1016/0092-8674(77)90120-9  0.562
1975 McKenzie SL, Henikoff S, Meselson M. Localization of RNA from heat induced polysomes at puff sites in Drosophila melanogaster Proceedings of the National Academy of Sciences of the United States of America. 72: 1117-1121. PMID 805422 DOI: 10.1073/PNAS.72.3.1117  0.589
1974 Henikoff S, Heywood J, Meselson M. Orientation of repeating units in Xenopus chromosomal ribosomal DNA: A test of a stochastic model for maintaining intraspecies homogeneity. Journal of Molecular Biology. 85: 445-50. PMID 22003577 DOI: 10.1016/0022-2836(74)90443-4  0.603
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