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Steven Henikoff - Publications

Fred Hutchinson Cancer Research Center, Seattle, WA, United States 

350 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chew GL, Bleakley M, Bradley RK, Malik HS, Henikoff S, Molaro A, Sarthy J. Short H2A histone variants are expressed in cancer. Nature Communications. 12: 490. PMID 33473122 DOI: 10.1038/s41467-020-20707-x  1
2020 Molaro A, Wood AJ, Janssens D, Kindelay SM, Eickbush MT, Wu S, Singh P, Muller CH, Henikoff S, Malik HS. Biparental contributions of the H2A.B histone variant control embryonic development in mice. Plos Biology. 18: e3001001. PMID 33362208 DOI: 10.1371/journal.pbio.3001001  1
2020 Henikoff S, Henikoff JG, Kaya-Okur HS, Ahmad K. Efficient chromatin accessibility mapping by nucleosome-tethered tagmentation. Elife. 9. PMID 33191916 DOI: 10.7554/eLife.63274  1
2020 Kaya-Okur HS, Janssens DH, Henikoff JG, Ahmad K, Henikoff S. Efficient low-cost chromatin profiling with CUT&Tag. Nature Protocols. PMID 32913232 DOI: 10.1038/s41596-020-0373-x  1
2020 Sarthy JF, Meers MP, Janssens DH, Henikoff JG, Feldman H, Paddison PJ, Lockwood CM, Vitanza NA, Olson JM, Ahmad K, Henikoff S. Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones. Elife. 9. PMID 32902381 DOI: 10.7554/eLife.61090  1
2020 Henikoff S, Ahmad K. Evolution: Heterochromatin Diversity in Early-Branching Land Plants. Current Biology : Cb. 30: R161-R163. PMID 32097641 DOI: 10.1016/j.cub.2019.12.044  1
2020 Zeineldin M, Federico S, Chen X, Fan Y, Xu B, Stewart E, Zhou X, Jeon J, Griffiths L, Nguyen R, Norrie J, Easton J, Mulder H, Yergeau D, Liu Y, ... ... Henikoff S, et al. MYCN amplification and ATRX mutations are incompatible in neuroblastoma. Nature Communications. 11: 913. PMID 32060267 DOI: 10.1038/s41467-020-14682-6  0.76
2020 Talbert PB, Henikoff S. What makes a centromere? Experimental Cell Research. 111895. PMID 32035948 DOI: 10.1016/j.yexcr.2020.111895  0.64
2019 Brahma S, Henikoff S. Epigenome Regulation by Dynamic Nucleosome Unwrapping. Trends in Biochemical Sciences. PMID 31630896 DOI: 10.1016/j.tibs.2019.09.003  1
2019 Sarthy JF, Henikoff S. Bringing Oncohistones into the Fold. Cancer Discovery. 9: 1346-1348. PMID 31575564 DOI: 10.1158/2159-8290.CD-19-0839  0.56
2019 Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, et al. EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England). 146. PMID 31558570 DOI: 10.1242/dev.178962  1
2019 Chereji RV, Bryson TD, Henikoff S. Quantitative MNase-seq accurately maps nucleosome occupancy levels. Genome Biology. 20: 198. PMID 31519205 DOI: 10.1186/s13059-019-1815-z  0.6
2019 Henikoff S, Ahmad K. Nucleosomes remember where they were. Proceedings of the National Academy of Sciences of the United States of America. PMID 31511423 DOI: 10.1073/pnas.1914581116  1
2019 Mathsyaraja H, Freie B, Cheng PF, Babaeva E, Catchpole JT, Janssens D, Henikoff S, Eisenman RN. deletion destabilizes MYC protein and abrogates Eµ- lymphomagenesis. Genes & Development. PMID 31395740 DOI: 10.1101/gad.325878.119  0.4
2019 Meers MP, Tenenbaum D, Henikoff S. Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling. Epigenetics & Chromatin. 12: 42. PMID 31300027 DOI: 10.1186/s13072-019-0287-4  0.76
2019 Meers MP, Janssens DH, Henikoff S. Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded. Molecular Cell. PMID 31253573 DOI: 10.1016/j.molcel.2019.05.025  0.76
2019 Meers MP, Bryson TD, Henikoff JG, Henikoff S. Improved CUT&RUN chromatin profiling tools. Elife. 8. PMID 31232687 DOI: 10.7554/eLife.46314  0.76
2019 Kaya-Okur HS, Wu SJ, Codomo CA, Pledger ES, Bryson TD, Henikoff JG, Ahmad K, Henikoff S. CUT&Tag for efficient epigenomic profiling of small samples and single cells. Nature Communications. 10: 1930. PMID 31036827 DOI: 10.1038/s41467-019-09982-5  1
2019 Sarthy JF, Henikoff S, Ahmad K. Chromatin Bottlenecks in Cancer. Trends in Cancer. 5: 183-194. PMID 30898265 DOI: 10.1016/j.trecan.2019.01.003  1
2019 Talbert PB, Meers MP, Henikoff S. Old cogs, new tricks: the evolution of gene expression in a chromatin context. Nature Reviews. Genetics. PMID 30886348 DOI: 10.1038/s41576-019-0105-7  0.76
2019 Brahma S, Henikoff S. RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast. Molecular Cell. 73: 238-249.e3. PMID 30554944 DOI: 10.1016/j.molcel.2018.10.046  1
2018 Janssens DH, Wu SJ, Sarthy JF, Meers MP, Myers CH, Olson JM, Ahmad K, Henikoff S. Automated in situ chromatin profiling efficiently resolves cell types and gene regulatory programs. Epigenetics & Chromatin. 11: 74. PMID 30577869 DOI: 10.1186/s13072-018-0243-8  1
2018 Ahmad K, Henikoff S. No strand left behind. Science (New York, N.Y.). 361: 1311-1312. PMID 30262484 DOI: 10.1126/science.aav0871  1
2018 Ramachandran S, Henikoff S. MINCE-Seq: Mapping In Vivo Nascent Chromatin with EdU and Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1832: 159-168. PMID 30073526 DOI: 10.1007/978-1-4939-8663-7_8  1
2018 Henikoff S, Ramachandran S. Pioneers Invade the Nucleosomal Landscape. Molecular Cell. 71: 193-194. PMID 30028998 DOI: 10.1016/j.molcel.2018.07.004  1
2018 Talbert PB, Henikoff S. Transcribing Centromeres: Noncoding RNAs and Kinetochore Assembly. Trends in Genetics : Tig. PMID 29871772 DOI: 10.1016/j.tig.2018.05.001  0.64
2018 Skene PJ, Henikoff JG, Henikoff S. Targeted in situ genome-wide profiling with high efficiency for low cell numbers. Nature Protocols. 13: 1006-1019. PMID 29651053 DOI: 10.1038/nprot.2018.015  0.72
2018 Chereji RV, Ramachandran S, Bryson TD, Henikoff S. Precise genome-wide mapping of single nucleosomes and linkers in vivo. Genome Biology. 19: 19. PMID 29426353 DOI: 10.1186/s13059-018-1398-0  1
2018 Kasinathan S, Henikoff S. Non-B-form DNA is enriched at centromeres. Molecular Biology and Evolution. PMID 29365169 DOI: 10.1093/molbev/msy010  0.68
2018 Talbert P, Kasinathan S, Henikoff S. Simple and Complex Centromeric Satellites in Drosophila Sibling Species. Genetics. PMID 29305387 DOI: 10.1534/genetics.117.300620  0.68
2017 Ramachandran S, Ahmad K, Henikoff S. Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates. Molecular Cell. PMID 29225036 DOI: 10.1016/j.molcel.2017.11.015  1
2017 Henikoff S, Thakur J, Kasinathan S, Talbert PB. Remarkable Evolutionary Plasticity of Centromeric Chromatin. Cold Spring Harbor Symposia On Quantitative Biology. PMID 29196559 DOI: 10.1101/sqb.2017.82.033605  0.68
2017 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 8: 15723. PMID 28580964 DOI: 10.1038/ncomms15723  0.96
2017 Kasinathan S, Zentner GE, Xin B, Rohs R, Henikoff S. Correspondence: Reply to 'DNA shape is insufficient to explain binding'. Nature Communications. 8: 15644. PMID 28580953 DOI: 10.1038/ncomms15644  0.96
2017 Ramachandran S, Ahmad K, Henikoff S. Capitalizing on disaster: Establishing chromatin specificity behind the replication fork. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28133760 DOI: 10.1002/bies.201600150  1
2016 Talbert PB, Henikoff S. Histone variants on the move: substrates for chromatin dynamics. Nature Reviews. Molecular Cell Biology. PMID 27924075 DOI: 10.1038/nrm.2016.148  0.64
2016 Grünberg S, Henikoff S, Hahn S, Zentner GE. Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters. The Embo Journal. PMID 27797823 DOI: 10.15252/embj.201695020  0.96
2016 Henikoff S. Mechanisms of Nucleosome Dynamics In Vivo. Cold Spring Harbor Perspectives in Medicine. PMID 27503998 DOI: 10.1101/cshperspect.a026666  1
2016 Thakur J, Henikoff S. CENPT bridges adjacent CENPA nucleosomes on young human α-satellite dimers. Genome Research. PMID 27384170 DOI: 10.1101/gr.204784.116  1
2016 Ramachandran S, Henikoff S. Transcriptional Regulators Compete with Nucleosomes Post-replication. Cell. PMID 27062929 DOI: 10.1016/j.cell.2016.02.062  1
2016 Ramachandran S, Henikoff S. Nucleosome dynamics during chromatin remodeling in vivo. Nucleus (Austin, Tex.). 1-7. PMID 26933790 DOI: 10.1080/19491034.2016.1149666  1
2016 Drinnenberg IA, Henikoff S, Malik HS. Evolutionary Turnover of Kinetochore Proteins: A Ship of Theseus? Trends in Cell Biology. PMID 26877204 DOI: 10.1016/j.tcb.2016.01.005  1
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 10264. PMID 26669278 DOI: 10.1038/ncomms10264  0.96
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 8733. PMID 26490019 DOI: 10.1038/ncomms9733  1
2015 Thakur J, Talbert PB, Henikoff S. Inner Kinetochore Protein Interactions with Regional Centromeres of Fission Yeast. Genetics. 201: 543-61. PMID 26275423 DOI: 10.1534/genetics.115.179788  1
2015 Ramachandran S, Henikoff S. Replicating Nucleosomes. Science Advances. 1. PMID 26269799 DOI: 10.1126/sciadv.1500587  1
2015 Henikoff S. The Genetic Map Enters Its Second Century. Genetics. 200: 671-4. PMID 26170439 DOI: 10.1534/genetics.115.178434  1
2015 Henikoff S. Epigenomic Landscapes Reflect Neuronal Diversity. Neuron. 86: 1319-21. PMID 26087157 DOI: 10.1016/j.neuron.2015.06.002  1
2015 Skene PJ, Henikoff S. A simple method for generating high-resolution maps of genome-wide protein binding. Elife. 4. PMID 26079792 DOI: 10.7554/eLife.09225  1
2015 Zentner GE, Henikoff S. Epigenome editing made easy. Nature Biotechnology. 33: 606-7. PMID 26057978 DOI: 10.1038/nbt.3248  1
2015 Steiner FA, Henikoff S. Diversity in the organization of centromeric chromatin. Current Opinion in Genetics & Development. 31: 28-35. PMID 25956076 DOI: 10.1016/j.gde.2015.03.010  1
2015 Henikoff JG, Thakur J, Kasinathan S, Henikoff S. A unique chromatin complex occupies young α-satellite arrays of human centromeres. Science Advances. 1. PMID 25927077 DOI: 10.1126/sciadv.1400234  0.72
2015 Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K. Mapping regulatory factors by immunoprecipitation from native chromatin. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 110: 21.31.1-21.31.25. PMID 25827087 DOI: 10.1002/0471142727.mb2131s110  1
2015 Williams BP, Pignatta D, Henikoff S, Gehring M. Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat. Plos Genetics. 11: e1005142. PMID 25826366 DOI: 10.1371/journal.pgen.1005142  1
2015 Yang F, Kemp CJ, Henikoffa S. Anthracyclines induce double-strand DNA breaks at active gene promoters. Mutation Research. 773: 9-15. PMID 25705119 DOI: 10.1016/j.mrfmmm.2015.01.007  1
2015 Henikoff S, Smith MM. Histone variants and epigenetics. Cold Spring Harbor Perspectives in Biology. 7: a019364. PMID 25561719 DOI: 10.1101/cshperspect.a019364  1
2015 Ramachandran S, Zentner GE, Henikoff S. Asymmetric nucleosomes flank promoters in the budding yeast genome. Genome Research. 25: 381-90. PMID 25491770 DOI: 10.1101/gr.182618.114  1
2015 Steiner FA, Henikoff S. Cell type-specific affinity purification of nuclei for chromatin profiling in whole animals. Methods in Molecular Biology (Clifton, N.J.). 1228: 3-14. PMID 25311117 DOI: 10.1007/978-1-4939-1680-1_1  1
2014 Teves SS, Weber CM, Henikoff S. Transcribing through the nucleosome. Trends in Biochemical Sciences. 39: 577-86. PMID 25455758 DOI: 10.1016/j.tibs.2014.10.004  1
2014 Kasinathan S, Henikoff S. 5-Aza-CdR delivers a gene body blow. Cancer Cell. 26: 449-51. PMID 25314073 DOI: 10.1016/j.ccell.2014.09.004  1
2014 Zentner GE, Henikoff S. High-resolution digital profiling of the epigenome. Nature Reviews. Genetics. 15: 814-27. PMID 25297728 DOI: 10.1038/nrg3798  1
2014 Drinnenberg IA, deYoung D, Henikoff S, Malik HS. Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects. Elife. 3. PMID 25247700 DOI: 10.7554/eLife.03676  1
2014 Talbert PB, Henikoff S. Environmental responses mediated by histone variants. Trends in Cell Biology. 24: 642-50. PMID 25150594 DOI: 10.1016/j.tcb.2014.07.006  1
2014 Skene PJ, Henikoff S. Histones push the envelope. Nature Structural & Molecular Biology. 21: 651-2. PMID 25093523 DOI: 10.1038/nsmb.2864  1
2014 Teves SS, Henikoff S. DNA torsion as a feedback mediator of transcription and chromatin dynamics. Nucleus (Austin, Tex.). 5: 211-8. PMID 24819949 DOI: 10.4161/nucl.29086  1
2014 Skene PJ, Hernandez AE, Groudine M, Henikoff S. The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1. Elife. 3: e02042. PMID 24737864 DOI: 10.7554/eLife.02042  1
2014 Henikoff S, Ramachandran S, Krassovsky K, Bryson TD, Codomo CA, Brogaard K, Widom J, Wang JP, Henikoff JG. The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo. Elife. 3: e01861. PMID 24737863 DOI: 10.7554/eLife.01861  1
2014 Steiner FA, Henikoff S. Holocentromeres are dispersed point centromeres localized at transcription factor hotspots. Elife. 3: e02025. PMID 24714495 DOI: 10.7554/eLife.02025  1
2014 Weber CM, Henikoff S. Histone variants: dynamic punctuation in transcription. Genes & Development. 28: 672-82. PMID 24696452 DOI: 10.1101/gad.238873.114  1
2014 Orsi GA, Kasinathan S, Hughes KT, Saminadin-Peter S, Henikoff S, Ahmad K. High-resolution mapping defines the cooperative architecture of Polycomb response elements. Genome Research. 24: 809-20. PMID 24668908 DOI: 10.1101/gr.163642.113  1
2014 Weber CM, Ramachandran S, Henikoff S. Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase. Molecular Cell. 53: 819-30. PMID 24606920 DOI: 10.1016/j.molcel.2014.02.014  1
2014 Krassovsky K, Henikoff S. Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster. Bmc Genomics. 15: 105. PMID 24498936 DOI: 10.1186/1471-2164-15-105  1
2014 Codomo CA, Furuyama T, Henikoff S. CENP-A octamers do not confer a reduction in nucleosome height by AFM. Nature Structural & Molecular Biology. 21: 4-5. PMID 24389542 DOI: 10.1038/nsmb.2743  1
2014 Yang F, Teves SS, Kemp CJ, Henikoff S. Doxorubicin, DNA torsion, and chromatin dynamics. Biochimica Et Biophysica Acta. 1845: 84-9. PMID 24361676 DOI: 10.1016/j.bbcan.2013.12.002  1
2014 Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nature Methods. 11: 203-9. PMID 24336359 DOI: 10.1038/nmeth.2766  1
2014 Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nature Structural & Molecular Biology. 21: 88-94. PMID 24317489 DOI: 10.1038/nsmb.2723  1
2013 Zhang T, Talbert PB, Zhang W, Wu Y, Yang Z, Henikoff JG, Henikoff S, Jiang J. The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres. Proceedings of the National Academy of Sciences of the United States of America. 110: E4875-83. PMID 24191062 DOI: 10.1073/pnas.1319548110  1
2013 Zentner GE, Henikoff S. Mot1 redistributes TBP from TATA-containing to TATA-less promoters. Molecular and Cellular Biology. 33: 4996-5004. PMID 24144978 DOI: 10.1128/MCB.01218-13  1
2013 Talbert PB, Henikoff S. Phylogeny as the basis for naming histones. Trends in Genetics : Tig. 29: 499-500. PMID 23876620 DOI: 10.1016/j.tig.2013.06.009  1
2013 Skene PJ, Henikoff S. Histone variants in pluripotency and disease. Development (Cambridge, England). 140: 2513-24. PMID 23715545 DOI: 10.1242/dev.091439  1
2013 Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM. Sixty years of genome biology. Genome Biology. 14: 113. PMID 23651518 DOI: 10.1186/gb-2013-14-4-113  1
2013 Furuyama T, Codomo CA, Henikoff S. Reconstitution of hemisomes on budding yeast centromeric DNA. Nucleic Acids Research. 41: 5769-83. PMID 23620291 DOI: 10.1093/nar/gkt314  1
2013 Yang F, Kemp CJ, Henikoff S. Doxorubicin enhances nucleosome turnover around promoters. Current Biology : Cb. 23: 782-7. PMID 23602475 DOI: 10.1016/j.cub.2013.03.043  1
2013 Zentner GE, Tsukiyama T, Henikoff S. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. Plos Genetics. 9: e1003317. PMID 23468649 DOI: 10.1371/journal.pgen.1003317  1
2013 Zentner GE, Henikoff S. Regulation of nucleosome dynamics by histone modifications. Nature Structural & Molecular Biology. 20: 259-66. PMID 23463310 DOI: 10.1038/nsmb.2470  1
2013 Henikoff S, Grosveld F. Epigenetics & chromatin: interactions and processes. Epigenetics & Chromatin. 6: 2. PMID 23442888 DOI: 10.1186/1756-8935-6-2  1
2013 Teves SS, Henikoff S. The heat shock response: A case study of chromatin dynamics in gene regulation. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 91: 42-8. PMID 23442140 DOI: 10.1139/bcb-2012-0075  1
2013 Cooper JL, Henikoff S, Comai L, Till BJ. TILLING and ecotilling for rice. Methods in Molecular Biology (Clifton, N.J.). 956: 39-56. PMID 23135843 DOI: 10.1007/978-1-62703-194-3_4  1
2012 Talbert PB, Henikoff S. Chromatin: packaging without nucleosomes. Current Biology : Cb. 22: R1040-3. PMID 23257187 DOI: 10.1016/j.cub.2012.10.052  1
2012 Skene PJ, Henikoff S. Chromatin roadblocks to reprogramming 50 years on. Bmc Biology. 10: 83. PMID 23107587 DOI: 10.1186/1741-7007-10-83  1
2012 Zentner GE, Henikoff S. Surveying the epigenomic landscape, one base at a time. Genome Biology. 13: 250. PMID 23088423 DOI: 10.1186/gb4051  1
2012 Teves SS, Deal RB, Henikoff S. Measuring genome-wide nucleosome turnover using CATCH-IT. Methods in Enzymology. 513: 169-84. PMID 22929769 DOI: 10.1016/B978-0-12-391938-0.00007-0  1
2012 Sim NL, Kumar P, Hu J, Henikoff S, Schneider G, Ng PC. SIFT web server: predicting effects of amino acid substitutions on proteins. Nucleic Acids Research. 40: W452-7. PMID 22689647 DOI: 10.1093/nar/gks539  1
2012 Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, ... ... Henikoff S, et al. A unified phylogeny-based nomenclature for histone variants. Epigenetics & Chromatin. 5: 7. PMID 22650316 DOI: 10.1186/1756-8935-5-7  1
2012 Henikoff S, Furuyama T. The unconventional structure of centromeric nucleosomes. Chromosoma. 121: 341-52. PMID 22552438 DOI: 10.1007/s00412-012-0372-y  1
2012 Henikoff S. Chromatin processes, epigenetic inheritance, centromere structure and function and evolution. Current Biology : Cb. 22: R106-7. PMID 22468275 DOI: 10.1016/j.cub.2011.12.014  1
2012 Henikoff S, Henikoff JG. "Point" centromeres of Saccharomyces harbor single centromere-specific nucleosomes. Genetics. 190: 1575-7. PMID 22234856 DOI: 10.1534/genetics.111.137711  1
2012 Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S. Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling. Genome Research. 22: 766-77. PMID 22219512 DOI: 10.1101/gr.131748.111  1
2012 Krassovsky K, Henikoff JG, Henikoff S. Tripartite organization of centromeric chromatin in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. 109: 243-8. PMID 22184235 DOI: 10.1073/pnas.1118898109  1
2012 Teves SS, Henikoff S. Salt fractionation of nucleosomes for genome-wide profiling. Methods in Molecular Biology (Clifton, N.J.). 833: 421-32. PMID 22183608 DOI: 10.1007/978-1-61779-477-3_25  1
2012 Henikoff S, Henikoff JG, Agus S, Wallace JC. Searching for Homologies to Protein Blocks by Electronic Mail Automated Dna Sequencing and Analysis. 313-320. DOI: 10.1016/B978-0-08-092639-1.50046-0  1
2012 Till BJ, Zerr T, Comai L, Henikoff S. A protocol for tilling and eco-tilling Plant Mutation Breeding and Biotechnology. 269-286.  1
2011 Teves SS, Henikoff S. Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide. Genes & Development. 25: 2387-97. PMID 22085965 DOI: 10.1101/gad.177675.111  1
2011 Henikoff JG, Belsky JA, Krassovsky K, MacAlpine DM, Henikoff S. Epigenome characterization at single base-pair resolution. Proceedings of the National Academy of Sciences of the United States of America. 108: 18318-23. PMID 22025700 DOI: 10.1073/pnas.1110731108  1
2011 Gehring M, Missirian V, Henikoff S. Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. Plos One. 6: e23687. PMID 21858209 DOI: 10.1371/journal.pone.0023687  1
2011 Henikoff S, Shilatifard A. Histone modification: cause or cog? Trends in Genetics : Tig. 27: 389-96. PMID 21764166 DOI: 10.1016/j.tig.2011.06.006  1
2011 Deal RB, Henikoff S. The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nature Protocols. 6: 56-68. PMID 21212783 DOI: 10.1038/nprot.2010.175  1
2011 Deal RB, Henikoff S. Histone variants and modifications in plant gene regulation. Current Opinion in Plant Biology. 14: 116-22. PMID 21159547 DOI: 10.1016/j.pbi.2010.11.005  1
2010 Henikoff S. Summary: The nucleus--a close-knit community of dynamic structures. Cold Spring Harbor Symposia On Quantitative Biology. 75: 607-15. PMID 21502412 DOI: 10.1101/sqb.2010.75.051  1
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Henikoff S, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/science.1196914  0.64
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Henikoff S, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/science.1198374  1
2010 Weber CM, Henikoff JG, Henikoff S. H2A.Z nucleosomes enriched over active genes are homotypic. Nature Structural & Molecular Biology. 17: 1500-7. PMID 21057526 DOI: 10.1038/nsmb.1926  1
2010 Henikoff S, Furuyama T. Epigenetic inheritance of centromeres. Cold Spring Harbor Symposia On Quantitative Biology. 75: 51-60. PMID 21047902 DOI: 10.1101/sqb.2010.75.001  1
2010 Deal RB, Henikoff S. Capturing the dynamic epigenome. Genome Biology. 11: 218. PMID 20959022 DOI: 10.1186/gb-2010-11-10-218  1
2010 Conerly ML, Teves SS, Diolaiti D, Ulrich M, Eisenman RN, Henikoff S. Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis. Genome Research. 20: 1383-90. PMID 20709945 DOI: 10.1101/gr.106542.110  1
2010 Deal RB, Henikoff S. Catching a glimpse of nucleosome dynamics. Cell Cycle (Georgetown, Tex.). 9: 3389-90. PMID 20703085 DOI: 10.4161/cc.9.17.13091  1
2010 Deal RB, Henikoff S. A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Developmental Cell. 18: 1030-40. PMID 20627084 DOI: 10.1016/j.devcel.2010.05.013  1
2010 Deal RB, Henikoff JG, Henikoff S. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science (New York, N.Y.). 328: 1161-4. PMID 20508129 DOI: 10.1126/science.1186777  1
2010 Bryson TD, Weber CM, Henikoff S. Baculovirus-encoded protein expression for epigenomic profiling in Drosophila cells. Fly. 4: 258-65. PMID 20495356 DOI: 10.4161/fly.4.3.12177  1
2010 Talbert PB, Henikoff S. Centromeres convert but don't cross. Plos Biology. 8: e1000326. PMID 20231873 DOI: 10.1371/journal.pbio.1000326  1
2010 Talbert PB, Henikoff S. Histone variants--ancient wrap artists of the epigenome. Nature Reviews. Molecular Cell Biology. 11: 264-75. PMID 20197778 DOI: 10.1038/nrm2861  1
2010 Deal RB, Henikoff S. Gene regulation: A chromatin thermostat. Nature. 463: 887-8. PMID 20164913 DOI: 10.1038/463887a  1
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/journal.pgen.1000814  1
2010 Ooi SL, Henikoff JG, Henikoff S. A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans. Nucleic Acids Research. 38: e26. PMID 19966274 DOI: 10.1093/nar/gkp1090  1
2010 Borinstein SC, Conerly M, Dzieciatkowski S, Biswas S, Washington MK, Trobridge P, Henikoff S, Grady WM. Aberrant DNA methylation occurs in colon neoplasms arising in the azoxymethane colon cancer model. Molecular Carcinogenesis. 49: 94-103. PMID 19777566 DOI: 10.1002/mc.20581  1
2009 Malik HS, Henikoff S. Major evolutionary transitions in centromere complexity. Cell. 138: 1067-82. PMID 19766562 DOI: 10.1016/j.cell.2009.08.036  1
2009 Henikoff S. Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'. Nature Genetics. 41: 865-6. PMID 19639024 DOI: 10.1038/ng0809-865  1
2009 Furuyama T, Henikoff S. Centromeric nucleosomes induce positive DNA supercoils. Cell. 138: 104-13. PMID 19596238 DOI: 10.1016/j.cell.2009.04.049  1
2009 Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nature Protocols. 4: 1073-81. PMID 19561590 DOI: 10.1038/nprot.2009.86  1
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927a  1
2009 Gehring M, Bubb KL, Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science (New York, N.Y.). 324: 1447-51. PMID 19520961 DOI: 10.1126/science.1171609  1
2009 De Bustos C, Ramos E, Young JM, Tran RK, Menzel U, Langford CF, Eichler EE, Hsu L, Henikoff S, Dumanski JP, Trask BJ. Tissue-specific variation in DNA methylation levels along human chromosome 1. Epigenetics & Chromatin. 2: 7. PMID 19505295 DOI: 10.1186/1756-8935-2-7  0.48
2009 Talbert PB, Henikoff S. Chromatin-based transcriptional punctuation. Genes & Development. 23: 1037-41. PMID 19417102 DOI: 10.1101/gad.1806409  1
2009 Gehring M, Reik W, Henikoff S. DNA demethylation by DNA repair. Trends in Genetics : Tig. 25: 82-90. PMID 19144439 DOI: 10.1016/j.tig.2008.12.001  1
2009 Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Research. 19: 460-9. PMID 19088306 DOI: 10.1101/gr.087619.108  1
2009 Furuyama T, Henikoff S. Response: Right-Handed Half-Nucleosomes at Centromeres Cell. 139: 1217-1218. DOI: 10.1016/j.cell.2009.12.015  1
2009 Henikoff S. Epigenetic profiling of histone variants Epigenomics. 101-118. DOI: 10.1007/978-1-4020-9187-2_7  1
2009 Talbert PB, Bayes JJ, Henikoff S. Evolution of centromeres and kinetochores: A two-part fugue The Kinetochore: From Molecular Discoveries to Cancer Therapy. 193-229. DOI: 10.1007/978-0-387-69076-6_7  1
2008 Gehring M, Henikoff S. DNA methylation and demethylation in Arabidopsis. The Arabidopsis Book / American Society of Plant Biologists. 6: e0102. PMID 22303233 DOI: 10.1199/tab.0102  0.48
2008 Cooper JL, Till BJ, Henikoff S. Fly-TILL: reverse genetics using a living point mutation resource. Fly. 2: 300-2. PMID 19098435  1
2008 Wang H, Dalal Y, Henikoff S, Lindsay S. Single-epitope recognition imaging of native chromatin. Epigenetics & Chromatin. 1: 10. PMID 19091111 DOI: 10.1186/1756-8935-1-10  1
2008 Yan H, Talbert PB, Lee HR, Jett J, Henikoff S, Chen F, Jiang J. Intergenic locations of rice centromeric chromatin. Plos Biology. 6: e286. PMID 19067486 DOI: 10.1371/journal.pbio.0060286  1
2008 Henikoff S, Strahl BD, Warburton PE. Epigenomics: a roadmap to chromatin. Science (New York, N.Y.). 322: 853. PMID 18988822 DOI: 10.1126/science.322.5903.853a  1
2008 Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456: 125-9. PMID 18815594 DOI: 10.1038/nature07324  1
2008 Cooper JL, Greene EA, Till BJ, Codomo CA, Wakimoto BT, Henikoff S. Retention of induced mutations in a Drosophila reverse-genetic resource. Genetics. 180: 661-7. PMID 18780737 DOI: 10.1534/genetics.108.092437  1
2008 Jones PA, Archer TK, Baylin SB, Beck S, Berger S, Bernstein BE, Carpten JD, Clark SJ, Costello JF, Doerge RW, Esteller M, Feinberg AP, Gingeras TR, Greally JM, Henikoff S, et al. Moving AHEAD with an international human epigenome project Nature. 454: 711-715. PMID 18685699 DOI: 10.1038/454711a  1
2008 Cooper JL, Till BJ, Laport RG, Darlow MC, Kleffner JM, Jamai A, El-Mellouki T, Liu S, Ritchie R, Nielsen N, Bilyeu KD, Meksem K, Comai L, Henikoff S. TILLING to detect induced mutations in soybean. Bmc Plant Biology. 8: 9. PMID 18218134 DOI: 10.1186/1471-2229-8-9  1
2008 Henikoff S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nature Reviews. Genetics. 9: 15-26. PMID 18059368 DOI: 10.1038/nrg2206  1
2007 Henikoff S. Nucleosomes at active promoters: unforgettable loss. Cancer Cell. 12: 407-9. PMID 17996642 DOI: 10.1016/j.ccr.2007.10.024  1
2007 Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns. Development (Cambridge, England). 134: 3959-65. PMID 17928417 DOI: 10.1242/dev.001131  1
2007 Dalal Y, Furuyama T, Vermaak D, Henikoff S. Structure, dynamics, and evolution of centromeric nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 15974-81. PMID 17893333 DOI: 10.1073/pnas.0707648104  1
2007 Dalal Y, Wang H, Lindsay S, Henikoff S. Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells. Plos Biology. 5: e218. PMID 17676993 DOI: 10.1371/journal.pbio.0050218  1
2007 Henikoff S. ENCODE and our very busy genome. Nature Genetics. 39: 817-8. PMID 17597770 DOI: 10.1038/ng0707-817  1
2007 Ooi SL, Henikoff S. Germline histone dynamics and epigenetics. Current Opinion in Cell Biology. 19: 257-65. PMID 17467256 DOI: 10.1016/  1
2007 Till BJ, Cooper J, Tai TH, Colowit P, Greene EA, Henikoff S, Comai L. Discovery of chemically induced mutations in rice by TILLING. Bmc Plant Biology. 7: 19. PMID 17428339 DOI: 10.1186/1471-2229-7-19  1
2007 Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 6752-7. PMID 17409185 DOI: 10.1073/pnas.0701861104  1
2007 Mito Y, Henikoff JG, Henikoff S. Histone replacement marks the boundaries of cis-regulatory domains. Science (New York, N.Y.). 315: 1408-11. PMID 17347439 DOI: 10.1126/science.1134004  1
2007 Gehring M, Henikoff S. DNA methylation dynamics in plant genomes. Biochimica Et Biophysica Acta. 1769: 276-86. PMID 17341434 DOI: 10.1016/j.bbaexp.2007.01.009  1
2007 Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 39: 61-9. PMID 17128275 DOI: 10.1038/ng1929  1
2007 Till BJ, Comai L, Henikoff S. Tilling and ecotilling for crop improvement Genomics-Assisted Crop Improvement. 1: 333-349. DOI: 10.1007/978-1-4020-6295-7_15  1
2007 Bhat RS, Upadhyaya NM, Chaudhury A, Raghavan C, Qiu F, Wang H, Wu J, McNally K, Leung H, Till B, Henikoff S, Comai L. Chemical- and irradiation-induced mutants and TILLING Rice Functional Genomics: Challenges, Progress and Prospects. 148-180. DOI: 10.1007/0-387-48914-2_8  1
2006 Till BJ, Zerr T, Comai L, Henikoff S. A protocol for TILLING and Ecotilling in plants and animals. Nature Protocols. 1: 2465-77. PMID 17406493 DOI: 10.1038/nprot.2006.329  1
2006 Dawe RK, Henikoff S. Centromeres put epigenetics in the driver's seat Trends in Biochemical Sciences. 31: 662-669. PMID 17074489 DOI: 10.1016/j.tibs.2006.10.004  1
2006 Talbert PB, Henikoff S. Spreading of silent chromatin: Inaction at a distance Nature Reviews Genetics. 7: 793-803. PMID 16983375 DOI: 10.1038/nrg1920  1
2006 Till BJ, Zerr T, Bowers E, Greene EA, Comai L, Henikoff S. High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling Nucleic Acids Research. 34. PMID 16893952 DOI: 10.1093/nar/gkl479  1
2006 Ooi SL, Priess JR, Henikoff S. Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans. Plos Genetics. 2: e97. PMID 16846252 DOI: 10.1371/journal.pgen.0020097  1
2006 Ng PC, Henikoff S. Predicting the effects of amino acid substitutions on protein function Annual Review of Genomics and Human Genetics. 7: 61-80. PMID 16824020 DOI: 10.1146/annurev.genom.7.080505.115630  1
2006 Furuyama T, Henikoff S. Biotin-tag affinity purification of a centromeric nucleosome assembly complex Cell Cycle. 5: 1269-1274. PMID 16775420  1
2006 Till BJ, Colbert T, Codomo C, Enns L, Johnson J, Reynolds SH, Henikoff JG, Greene EA, Steine MN, Comai L, Henikoff S. High-throughput TILLING for Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 323: 127-35. PMID 16739573 DOI: 10.1385/1-59745-003-0:127  1
2006 Lieb JD, Beck S, Bulyk ML, Farnham P, Hattori N, Henikoff S, Liu XS, Okumura K, Shiota K, Ushijima T, Greally JM. Applying whole-genome studies of epigenetic regulation to study human disease. Cytogenetic and Genome Research. 114: 1-15. PMID 16717444 DOI: 10.1159/000091922  1
2006 Furuyama T, Dalal Y, Henikoff S. Chaperone-mediated assembly of centromeric chromatin in vitro. Proceedings of the National Academy of Sciences of the United States of America. 103: 6172-7. PMID 16601098 DOI: 10.1073/pnas.0601686103  1
2006 Comai L, Henikoff S. TILLING: Practical single-nucleotide mutation discovery Plant Journal. 45: 684-694. PMID 16441355 DOI: 10.1111/j.1365-313X.2006.02670.x  1
2006 Feinberg AP, Ohlsson R, Henikoff S. The epigenetic progenitor origin of human cancer Nature Reviews Genetics. 7: 21-33. PMID 16369569 DOI: 10.1038/nrg1748  1
2006 Henikoff S. Is it a code: The debate. No: Histone modifications, although diverse, do not constitute a complex code of chromatin states Scientist. 20: 38-39.  1
2005 Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6: R90. PMID 16277745 DOI: 10.1186/gb-2005-6-11-r90  1
2005 Yan H, Jin W, Nagaki K, Tian S, Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang J. Transcription and histone modifications in the recombination-free region spanning a rice centromere. The Plant Cell. 17: 3227-38. PMID 16272428 DOI: 10.1105/tpc.105.037945  1
2005 Henikoff S. Rapid changes in plant genomes Plant Cell. 17: 2852-2855. PMID 16267377 DOI: 10.1105/tpc.105.038000  1
2005 Malik HS, Henikoff S. Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster. Plos Genetics. 1: e44. PMID 16244705 DOI: 10.1371/journal.pgen.0010044  1
2005 Henikoff S, Ahmad K. Assembly of variant histones into chromatin. Annual Review of Cell and Developmental Biology. 21: 133-53. PMID 16212490 DOI: 10.1146/annurev.cellbio.21.012704.133518  1
2005 Mito Y, Henikoff JG, Henikoff S. Genome-scale profiling of histone H3.3 replacement patterns Nature Genetics. 37: 1090-1097. PMID 16155569 DOI: 10.1038/ng1637  1
2005 Vermaak D, Henikoff S, Malik HS. Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila. Plos Genetics. 1: 96-108. PMID 16103923 DOI: 10.1371/journal.pgen.0010009  1
2005 Zilberman D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective silence Current Opinion in Genetics and Development. 15: 557-562. PMID 16085410 DOI: 10.1016/j.gde.2005.07.002  1
2005 Zerr T, Henikoff S. Automated band mapping in electrophoretic gel images using background information Nucleic Acids Research. 33: 2806-2812. PMID 15894797 DOI: 10.1093/nar/gki580  1
2005 Henikoff S. Histone modifications: Combinational complexity or cumulative simplicity? Proceedings of the National Academy of Sciences of the United States of America. 102: 5308-5309. PMID 15811936 DOI: 10.1073/pnas.0501853102  1
2005 Henikoff S, Dalal Y. Centromeric chromatin: what makes it unique? Current Opinion in Genetics & Development. 15: 177-84. PMID 15797200 DOI: 10.1016/j.gde.2005.01.004  1
2005 Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology : Cb. 15: 154-9. PMID 15668172 DOI: 10.1016/j.cub.2005.01.008  1
2005 Weil CF, Monde RA, Till BJ, Comai L, Henikoff S. Mutagenesis and functional genomics in maize Maydica. 50: 415-424.  1
2004 Henikoff S, McKittrick E, Ahmad K. Epigenetics, histone H3 variants, and the inheritance of chromatin states. Cold Spring Harbor Symposia On Quantitative Biology. 69: 235-43. PMID 16117654 DOI: 10.1101/sqb.2004.69.235  1
2004 Zilberman D, Henikoff S. Silencing of transposons in plant genomes: Kick them when they're down Genome Biology. 5. PMID 15575975 DOI: 10.1186/gb-2004-5-12-249  1
2004 Talbert PB, Bryson TD, Henikoff S. Adaptive evolution of centromere proteins in plants and animals Journal of Biology. 3. PMID 15345035  1
2004 Till BJ, Reynolds SH, Weil C, Springer N, Burtner C, Young K, Bowers E, Codomo CA, Enns LC, Odden AR, Greene EA, Comai L, Henikoff S. Discovery of induced point mutations in maize genes by TILLING. Bmc Plant Biology. 4: 12. PMID 15282033 DOI: 10.1186/1471-2229-4-12  1
2004 Henikoff S, Furuyama T, Ahmad K. Histone variants, nucleosome assembly and epigenetic inheritance. Trends in Genetics : Tig. 20: 320-6. PMID 15219397 DOI: 10.1016/j.tig.2004.05.004  1
2004 Cooper JL, Henikoff S. Adaptive evolution of the histone fold domain in centromeric histones Molecular Biology and Evolution. 21: 1712-1718. PMID 15175412 DOI: 10.1093/molbev/msh179  1
2004 Henikoff S, Till BJ, Comai L. TILLING. Traditional mutagenesis meets functional genomics Plant Physiology. 135: 630-636. PMID 15155876 DOI: 10.1104/pp.104.041061  1
2004 Till BJ, Burtner C, Comai L, Henikoff S. Mismatch cleavage by single-strand specific nucleases Nucleic Acids Research. 32: 2632-2641. PMID 15141034 DOI: 10.1093/nar/gkh599  1
2004 Henikoff S. Visualizing gene expression: An unfolding story Cell. 116: 633-634. PMID 15006344 DOI: 10.1016/S0092-8674(04)00209-0  1
2004 Jin W, Melo JR, Nagaki K, Talbert PB, Henikoff S, Dawe RK, Jiang J. Maize centromeres: Organization and functional adaptation in the genetic background of oat Plant Cell. 16: 571-581. PMID 14973167 DOI: 10.1105/tpc.018937  1
2004 Comai L, Young K, Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Henikoff S. Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. The Plant Journal : For Cell and Molecular Biology. 37: 778-86. PMID 14871304 DOI: 10.1111/j.0960-7412.2003.01999.x  1
2004 McKittrick E, Gafken PR, Ahmad K, Henikoff S. Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proceedings of the National Academy of Sciences of the United States of America. 101: 1525-30. PMID 14732680 DOI: 10.1073/pnas.0308092100  1
2004 Nagaki K, Cheng Z, Ouyang S, Talbert PB, Kim M, Jones KM, Henikoff S, Buell CR, Jiang J. Sequencing of a rice centromere uncovers active genes. Nature Genetics. 36: 138-45. PMID 14716315 DOI: 10.1038/ng1289  1
2004 Haig D, Henikoff S. Genomes and evolution: Deciphering the genomic palimpsest Current Opinion in Genetics and Development. 14: 599-602. DOI: 10.1016/j.gde.2004.10.002  1
2003 Greil F, van der Kraan I, Delrow J, Smothers JF, de Wit E, Bussemaker HJ, van Driel R, Henikoff S, van Steensel B. Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location. Genes & Development. 17: 2825-38. PMID 14630943 DOI: 10.1101/gad.281503  1
2003 Malik HS, Henikoff S. Phylogenomics of the nucleosome. Nature Structural Biology. 10: 882-91. PMID 14583738 DOI: 10.1038/nsb996  1
2003 Henikoff S, Comai L. Single-Nucleotide Mutations for Plant Functional Genomics Annual Review of Plant Biology. 54: 375-401. PMID 14502996 DOI: 10.1146/annurev.arplant.54.031902.135009  1
2003 Till BJ, Colbert T, Tompa R, Enns LC, Codomo CA, Johnson JE, Reynolds SH, Henikoff JG, Greene EA, Steine MN, Comai L, Henikoff S. High-throughput TILLING for functional genomics. Methods in Molecular Biology (Clifton, N.J.). 236: 205-20. PMID 14501067 DOI: 10.1385/1-59259-413-1:205  1
2003 Van Steensel B, Henikoff S. Epigenomic profiling using microarrays Biotechniques. 35: 346-357. PMID 12951776  1
2003 Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Research. 31: 3812-4. PMID 12824425  0.84
2003 Rose TM, Henikoff JG, Henikoff S. CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design. Nucleic Acids Research. 31: 3763-6. PMID 12824413 DOI: 10.1093/nar/gkg524  1
2003 Henikoff S. Versatile assembler Nature. 423: 814-817. PMID 12815411 DOI: 10.1038/423814a  1
2003 Greene EA, Codomo CA, Taylor NE, Henikoff JG, Till BJ, Reynolds SH, Enns LC, Burtner C, Johnson JE, Odden AR, Comai L, Henikoff S. Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics. 164: 731-40. PMID 12807792  1
2003 Vermaak D, Ahmad K, Henikoff S. Maintenance of chromatin states: an open-and-shut case. Current Opinion in Cell Biology. 15: 266-74. PMID 12787767 DOI: 10.1016/S0955-0674(03)00043-7  1
2003 Nagaki K, Talbert PB, Zhong CX, Dawe RK, Henikoff S, Jiang J. Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres Genetics. 163: 1221-1225. PMID 12663558  1
2003 Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S. Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Research. 13: 524-30. PMID 12618384 DOI: 10.1101/gr.977903  1
2003 Rutherford SL, Henikoff S. Quantitative epigenetics. Nature Genetics. 33: 6-8. PMID 12509772 DOI: 10.1038/ng0103-6  1
2003 Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function Nucleic Acids Research. 31: 3812-3814. DOI: 10.1093/nar/gkg509  1
2002 Henikoff JG, Greene EA, Taylor N, Henikoff S, Pietrokovski S. Using the blocks database to recognize functional domains. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.2. PMID 18792933 DOI: 10.1002/0471250953.bi0202s00  1
2002 Lindquist SL, Henikoff S. Self-perpetuating structural states in biology, disease, and genetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 16377. PMID 12475994 DOI: 10.1073/pnas.212504699  1
2002 Malik HS, Henikoff S. Conflict begets complexity: the evolution of centromeres. Current Opinion in Genetics & Development. 12: 711-8. PMID 12433586 DOI: 10.1016/S0959-437X(02)00351-9  1
2002 Ahmad K, Henikoff S. Epigenetic consequences of nucleosome dynamics. Cell. 111: 281-4. PMID 12419239 DOI: 10.1016/S0092-8674(02)01081-4  1
2002 Smothers JF, Henikoff S, Carter P. Affinity selection from biological libraries Science. 298: 621-622. PMID 12386335 DOI: 10.1126/science.298.5593.621  1
2002 Vermaak D, Hayden HS, Henikoff S. Centromere targeting element within the histone fold domain of Cid. Molecular and Cellular Biology. 22: 7553-61. PMID 12370302 DOI: 10.1128/MCB.22.21.7553-7561.2002  1
2002 Ahmad K, Henikoff S. Histone H3 variants specify modes of chromatin assembly. Proceedings of the National Academy of Sciences of the United States of America. 99: 16477-84. PMID 12177448 DOI: 10.1073/pnas.172403699  1
2002 Ahmad K, Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Molecular Cell. 9: 1191-200. PMID 12086617 DOI: 10.1016/S1097-2765(02)00542-7  1
2002 Talbert PB, Masuelli R, Tyagi AP, Comai L, Henikoff S. Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant Plant Cell. 14: 1053-1066. PMID 12034896 DOI: 10.1105/tpc.010425  1
2002 Henikoff S, Malik HS. Centromeres: selfish drivers. Nature. 417: 227. PMID 12015578 DOI: 10.1038/417227a  1
2002 Henikoff S. Near the edge of a chromosome's 'black hole' Trends in Genetics. 18: 165-167. PMID 11932007 DOI: 10.1016/S0168-9525(01)02622-1  1
2002 Ng PC, Henikoff S. Accounting for human polymorphisms predicted to affect protein function Genome Research. 12: 436-446. PMID 11875032 DOI: 10.1101/gr.212802  1
2002 Henikoff S. Beyond the central dogma Bioinformatics. 18: 223-225. PMID 11847069  1
2002 Malik HS, Vermaak D, Henikoff S. Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone. Proceedings of the National Academy of Sciences of the United States of America. 99: 1449-54. PMID 11805302 DOI: 10.1073/pnas.032664299  1
2002 Tompa R, McCallum CM, Delrow J, Henikoff JG, van Steensel B, Henikoff S. Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Current Biology : Cb. 12: 65-8. PMID 11790305 DOI: 10.1016/S0960-9822(01)00622-4  1
2002 Ahmad K, Henikoff S. The synthesis and crystal structure of {N-dodecyl-N-pyridin-2-ylmethylene]amine} dichloro palladium and its preliminary evaluation as a catalyst for ethylene polymerization Inorganic Chemistry Communications. 5: 724-726. DOI: 10.1016/S1387-7003(02)00551-8  1
2001 Borodin PM, Henikoff S, Ahmad K, Malik HS. Speciation and centromere evolution [3] (multiple letters) Science. 294: 2478-2480. PMID 11770517 DOI: 10.1126/science.294.5551.2478  1
2001 Henikoff S. Chromosomes on the move Trends in Genetics. 17: 689-690. PMID 11718909 DOI: 10.1016/S0168-9525(01)02527-6  1
2001 Smothers JF, Henikoff S. Predicting in vivo protein-peptide interactions with random phage display Combinatorial Chemistry and High Throughput Screening. 4: 585-591. PMID 11562261  1
2001 Henikoff S, Ahmad K, Malik HS. The centromere paradox: stable inheritance with rapidly evolving DNA. Science (New York, N.Y.). 293: 1098-102. PMID 11498581 DOI: 10.1126/science.1062939  1
2001 Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S. High-throughput screening for induced point mutations Plant Physiology. 126: 480-484. PMID 11402178 DOI: 10.1104/pp.126.2.480  1
2001 Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation Science. 292: 2077-2080. PMID 11349138 DOI: 10.1126/science.1059745  1
2001 Ng PC, Henikoff S. Predicting deleterious amino acid substitutions Genome Research. 11: 863-874. PMID 11337480 DOI: 10.1101/gr.176601  1
2001 Ahmad K, Henikoff S. Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila. Cell. 104: 839-47. PMID 11290322 DOI: 10.1016/S0092-8674(01)00281-1  1
2001 Ahmad K, Henikoff S. Centromeres are specialized replication domains in heterochromatin. The Journal of Cell Biology. 153: 101-10. PMID 11285277 DOI: 10.1083/jcb.153.1.101  1
2001 Smothers JF, Henikoff S. The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins Molecular and Cellular Biology. 21: 2555-2569. PMID 11259603 DOI: 10.1128/MCB.21.7.2555-2569.2001  1
2001 van Steensel B, Delrow J, Henikoff S. Chromatin profiling using targeted DNA adenine methyltransferase. Nature Genetics. 27: 304-8. PMID 11242113 DOI: 10.1038/85871  0.32
2001 Malik HS, Henikoff S. Adaptive evolution of Cid, a centromere-specific histone in Drosophila. Genetics. 157: 1293-8. PMID 11238413  1
2000 Henikoff S, Eissenberg JC, Hilliker AJ, Schmidt ER, Wallrath LL. Reaching for new heitz. Genetica. 109: 7-8. PMID 11293797 DOI: 10.1023/A:1026532032454  1
2000 Henikoff S, Vermaak D. Bugs on drugs, go GAGAA Cell. 103: 695-698. PMID 11114325  1
2000 Ng PC, Henikoff JG, Henikoff S. PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane. Bioinformatics (Oxford, England). 16: 760-6. PMID 11108698 DOI: 10.1093/bioinformatics/16.9.760  1
2000 Malik HS, Henikoff S, Eickbush TH. Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses. Genome Research. 10: 1307-18. PMID 10984449 DOI: 10.1101/gr.145000  1
2000 Malik HS, Henikoff S. Dual recognition-incision enzymes might be involved in mismatch repair and meiosis. Trends in Biochemical Sciences. 25: 414-8. PMID 10973051 DOI: 10.1016/S0968-0004(00)01623-6  1
2000 Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S. Blocks-based methods for detecting protein homology Electrophoresis. 21: 1700-1706. PMID 10870957 DOI: 10.1002/(SICI)1522-2683(20000501)21:9<1700::AID-ELPS1700>3.0.CO;2-V  1
2000 McCallum CM, Comai L, Greene EA, Henikoff S. Targeting induced local lesions IN genomes (TILLING) for plant functional genomics Plant Physiology. 123: 439-442. PMID 10859174 DOI: 10.1104/PP.123.2.439  1
2000 Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: 'The 2010 Project': Functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them Plant Physiology. 123: 423-425. PMID 10859172  1
2000 Henikoff S, Henikoff JG. Amino acid substitution matrices. Advances in Protein Chemistry. 54: 73-97. PMID 10829225  0.72
2000 Henikoff JG, Henikoff S. Drosophila genomic sequence annotation using the BLOCKS+ database Genome Research. 10: 543-546. PMID 10779495 DOI: 10.1101/gr.10.4.543  1
2000 McCallum CM, Comai L, Greene EA, Henikoff S. Targeted screening for induced mutations Nature Biotechnology. 18: 455-457. PMID 10748531 DOI: 10.1038/74542  1
2000 Van Steensel B, Henikoff S. Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase Nature Biotechnology. 18: 424-428. PMID 10748524 DOI: 10.1038/74487  1
2000 Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, et al. Comparative genomics of the eukaryotes. Science (New York, N.Y.). 287: 2204-15. PMID 10731134 DOI: 10.1126/science.287.5461.2204  1
2000 Smothers JF, Henikoff S. The HP1 chromo shadow domain binds a consensus peptide pentamer Current Biology. 10: 27-30. PMID 10660299 DOI: 10.1016/S0960-9822(99)00260-2  1
2000 Henikoff S. Heterochromatin function in complex genomes Biochimica Et Biophysica Acta - Reviews On Cancer. 1470. PMID 10656988 DOI: 10.1016/S0304-419X(99)00034-7  1
2000 Henikoff S, Ahmad K, Platero JS, van Steensel B. Heterochromatic deposition of centromeric histone H3-like proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 716-21. PMID 10639145 DOI: 10.1073/pnas.97.2.716  1
2000 Talbert PB, Henikoff S. A reexamination of spreading of position-effect variegation in the white-roughest region of Drosophila melanogaster Genetics. 154: 259-272. PMID 10628986  1
2000 Henikoff JG, Greene EA, Pietrokovski S, Henikoff S. Increased coverage of protein families with the Blocks Database servers Nucleic Acids Research. 28: 228-230. PMID 10592233  1
1999 Platero JS, Ahmad K, Henikoff S. A distal heterochromatic block displays centromeric activity when detached from a natural centromere. Molecular Cell. 4: 995-1004. PMID 10635324  1
1999 Buchwitz BJ, Ahmad K, Moore LL, Roth MB, Henikoff S. A histone-H3-like protein in C. elegans. Nature. 401: 547-8. PMID 10524621 DOI: 10.1038/44062  1
1999 Henikoff S, Henikoff JG, Pietrokovski S. Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations Bioinformatics. 15: 471-479. PMID 10383472 DOI: 10.1093/bioinformatics/15.6.471  1
1999 Sass GL, Henikoff S. Pairing-dependent mislocalization of a Drosophila brown gene reporter to a heterochromatic environment Genetics. 152: 595-604. PMID 10353902  1
1999 Martienssen R, Henikoff S. The House and Garden guide to chromatin remodelling Nature Genetics. 22: 6-7. PMID 10319848 DOI: 10.1038/8708  1
1999 Henikoff JG, Henikoff S, Pietrokovski S. New features of the Blocks Database servers Nucleic Acids Research. 27: 226-228. PMID 9847186 DOI: 10.1093/nar/27.1.226  1
1998 Fanti L, Dorer DR, Berloco M, Henikoff S, Pimpinelli S. Heterochromatin protein 1 binds transgene arrays. Chromosoma. 107: 286-92. PMID 9880761 DOI: 10.1007/s004120050310  1
1998 Csink AK, Henikoff S. Large-scale chromosomal movements during interphase progression in Drosophila. The Journal of Cell Biology. 143: 13-22. PMID 9763417 DOI: 10.1083/jcb.143.1.13  1
1998 Henikoff S. Conspiracy of silence among repeated transgenes Bioessays. 20: 532-535. PMID 9723001  1
1998 Csink AK, Henikoff S. Something from nothing: the evolution and utility of satellite repeats. Trends in Genetics : Tig. 14: 200-4. PMID 9613205 DOI: 10.1016/S0168-9525(98)01444-9  1
1998 Clark DV, Sabl JF, Henikoff S. Repetitive arrays containing a housekeeping gene have altered polytene chromosome morphology in Drosophila. Chromosoma. 107: 96-104. PMID 9601978 DOI: 10.1007/s004120050285  1
1998 Pietrokovski S, Henikoff JG, Henikoff S. Genetwork Trends in Genetics. 14: 162-163. PMID 9594665 DOI: 10.1016/S0168-9525(98)01421-8  1
1998 Henikoff S, Comai L. Trans-sensing effects: The ups-and downs of being together Cell. 93: 329-332. PMID 9590167 DOI: 10.1016/S0092-8674(00)81161-7  1
1998 Henikoff S, Comai L. A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis Genetics. 149: 307-318. PMID 9584105  1
1998 Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Research. 26: 1628-35. PMID 9512532 DOI: 10.1093/nar/26.7.1628  1
1998 Platero JS, Csink AK, Quintanilla A, Henikoff S. Changes in chromosomal localization of heterochromatin-binding proteins during the cell cycle in Drosophila. The Journal of Cell Biology. 140: 1297-306. PMID 9508764 DOI: 10.1083/jcb.140.6.1297  1
1998 Sass GL, Henikoff S. Comparative analysis of position-effect variegation mutations in Drosophila melanogaster delineates the targets of modifiers Genetics. 148: 733-741. PMID 9504920  1
1998 Greene EA, Henikoff S. Getting more from your sequences using the web Nature Genetics. 18: 209. PMID 9500536  1
1998 Henikoff S, Pietrokovski S, Henikoff JG. Superior performance in protein homology detection with the Blocks Database servers Nucleic Acids Research. 26: 309-312. PMID 9399861 DOI: 10.1093/nar/26.1.309  1
1997 Dorer DR, Henikoff S. Transgene repeat arrays interact with distant heterochromatin and cause silencing in cis and trans. Genetics. 147: 1181-90. PMID 9383061  1
1997 Green EA, Pietrokovski S, Henikoff S, Bork P, Attwood T, Hood L, Bairoch A. Genome maps 8. Building gene families. Wall chart. Science (New York, N.Y.). 278: 615-30. PMID 9381172  1
1997 Martin-Morris LE, Csink AK, Dorer DR, Talbert PB, Henikoff S. Heterochromatic trans-inactivation of Drosophila white transgenes. Genetics. 147: 671-7. PMID 9335603  1
1997 Henikoff S, Matzke MA. Exploring and explaining epigenetic effects Trends in Genetics : Tig. 13: 293-295. PMID 9260513  1
1997 Pietrokovski S, Henikoff S. A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons Molecular and General Genetics. 254: 689-695. PMID 9202385 DOI: 10.1007/s004380050467  1
1997 Levis RW, Henikoff S. You read it here first [5] Nature. 387: 843. PMID 9202111 DOI: 10.1038/43049  1
1997 Henikoff S. Nuclear organization and gene expression: Homologous pairing and long-range interactions Current Opinion in Cell Biology. 9: 388-395. PMID 9159074 DOI: 10.1016/S0955-0674(97)80012-9  1
1997 Henikoff S, Henikoff JG. Embedding strategies for effective use of information from multiple sequence alignments Protein Science. 6: 698-705. PMID 9070452  1
1997 Henikoff JG, Pietrokovski S, Henikoff S. Recent enhancements to the Blocks Database servers Nucleic Acids Research. 25: 222-225. PMID 9016540 DOI: 10.1093/nar/25.1.222  1
1996 Sabl JF, Henikoff S. Copy number and orientation determine the susceptibility of a gene to silencing by nearby heterochromatin in Drosophila. Genetics. 142: 447-58. PMID 8852844  1
1996 Clark D, Henikoff S. Ordered deletions using exonuclease III Methods in Molecular Biology (Clifton, N.J.). 57: 139-147. PMID 8850001  1
1996 Henikoff S. Scores for sequence searches and alignments Current Opinion in Structural Biology. 6: 353-360. PMID 8804821 DOI: 10.1016/S0959-440X(96)80055-8  1
1996 Henikoff JG, Henikoff S. Using substitution probabilities to improve position-specific scoring matrices Computer Applications in the Biosciences. 12: 135-143. PMID 8744776  1
1996 Henikoff JG, Henikoff S. [6] Blocks database and its applications Methods in Enzymology. 266: 88-105. PMID 8743679 DOI: 10.1016/S0076-6879(96)66008-X  1
1996 Clark D, Henikoff S. Ordered deletions using exonuclease III. Methods in Molecular Biology (Clifton, N.J.). 58: 349-57. PMID 8713883 DOI: 10.1385/0-89603-402-X:349  0.96
1996 Henikoff S. Dosage-dependent modification of position-effect variegation in Drosophila Bioessays. 18: 401-409. PMID 8639163  1
1996 Csink AK, Henikoff S. Genetic modification of heterochromatic association and nuclear organization in Drosophila. Nature. 381: 529-31. PMID 8632827 DOI: 10.1038/381529a0  1
1996 Pietrokovski S, Henikoff JG, Henikoff S. The Blocks database - A system for protein classification Nucleic Acids Research. 24: 197-200. PMID 8594578 DOI: 10.1093/nar/24.1.197  1
1996 Wines DR, Talbert PB, Clark DV, Henikoff S. Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo. Chromosoma. 104: 332-40. PMID 8575244  0.88
1995 Henikoff S. Comparative methods for identifying functional domains in protein sequences Biotechnology Annual Review. 1: 129-147. PMID 9704087  1
1995 Henikoff S, Jackson JM, Talbert PB. Distance and pairing effects on the brownDominant heterochromatic element in Drosophila. Genetics. 140: 1007-17. PMID 7672573  1
1995 Martin-Morris LE, Henikoff S. Conservation of brown gene trans-inactivation in Drosophila Genetics. 140: 193-199. PMID 7635284  1
1995 Henikoff S, Henikoff JG, Alford WJ, Pietrokovski S. Automated construction and graphical presentation of protein blocks from unaligned sequences. Gene. 163: GC17-26. PMID 7590261 DOI: 10.1016/0378-1119(95)00486-p  0.72
1994 Henikoff S, Henikoff JG. Protein family classification based on searching a database of blocks Genomics. 19: 97-107. PMID 8188249 DOI: 10.1006/geno.1994.1018  1
1994 Talbert PB, LeCiel CD, Henikoff S. Modification of the Drosophila heterochromatic mutation brownDominant by linkage alterations. Genetics. 136: 559-71. PMID 8150283  0.64
1994 Dorer DR, Henikoff S. Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila. Cell. 77: 993-1002. PMID 8020105 DOI: 10.1016/0092-8674(94)90439-1  1
1994 Henikoff S. A reconsideration of the mechanism of position effect Genetics. 138: 1-5. PMID 8001776  1
1994 Henikoff S, Henikoff JG. Position-based sequence weights Journal of Molecular Biology. 243: 574-578. PMID 7966282 DOI: 10.1016/0022-2836(94)90032-9  1
1994 Clark D, Henikoff S. Ordered deletions using exonuclease III. Methods in Molecular Biology (Clifton, N.J.). 31: 47-55. PMID 7921037 DOI: 10.1385/0-89603-258-2:47  0.96
1994 Henikoff S. Gene silencing in Drosophila Current Topics in Microbiology and Immunology. 197: 193-208. PMID 7493493  1
1993 Henikoff S, Meneely PM. Unwinding dosage compensation Cell. 72: 1-2. PMID 8422671 DOI: 10.1016/0092-8674(93)90040-W  1
1993 Henikoff S. Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family Trends in Biochemical Sciences. 18: 291-292. PMID 8236441 DOI: 10.1016/0968-0004(93)90037-N  1
1993 Henikoff S, Henikoff JG. Performance evaluation of amino acid substitution matrices Proteins: Structure, Function and Genetics. 17: 49-61. PMID 8234244  1
1993 Henikoff S. Sequence analysis by electronic mail server Trends in Biochemical Sciences. 18: 267-268. PMID 8212137 DOI: 10.1016/0968-0004(93)90179-Q  1
1993 Martin-Morris LE, Loughney K, Kershisnik EO, Poortinga G, Henikoff S. Characterization of sequences responsible for trans-inactivation of the Drosophila brown gene. Cold Spring Harbor Symposia On Quantitative Biology. 58: 577-84. PMID 7956072  1
1992 Christensen AC, Henikoff S. Fact and fiction in alignment [3] Nature. 358: 271. PMID 1640991 DOI: 10.1038/358271C0  1
1992 Wallace JC, Henikoff S. Patmat: A searching and extraction program for sequence, pattern and block queries and databases Bioinformatics. 8: 249-254. PMID 1633566 DOI: 10.1093/bioinformatics/8.3.249  1
1992 Wines DR, Henikoff S. Somatic instability of a Drosophila chromosome Genetics. 131: 683-691. PMID 1628811  1
1992 Clark DV, Henikoff S. Unusual organizational features of the Drosophila Gart locus are not conserved within diptera Journal of Molecular Evolution. 35: 51-59. PMID 1518084 DOI: 10.1007/BF00160260  1
1992 Henikoff S. Position effect and related phenomena Current Opinion in Genetics and Development. 2: 907-912. PMID 1477535 DOI: 10.1016/S0959-437X(05)80114-5  1
1992 Henikoff S, Henikoff JG. Amino acid substitution matrices from protein blocks Proceedings of the National Academy of Sciences of the United States of America. 89: 10915-10919. PMID 1438297 DOI: 10.1073/pnas.89.22.10915  1
1992 Hinchman SK, Henikoff S, Schuster SM. A relationship between asparagine synthetase A and aspartyl tRNA synthetase Journal of Biological Chemistry. 267: 144-149. PMID 1346128  1
1992 Henikoff S. Detection of Caenorhabditis transposon homologs in diverse organisms The New Biologist. 4: 382-388. PMID 1320399  1
1991 Tartof KD, Henikoff S. Trans-sensing effects from Drosophila to humans. Cell. 65: 201-3. PMID 2015622 DOI: 10.1016/0092-8674(91)90153-P  1
1991 Henikoff S, Levis R. So what's new? [2] Nature. 350: 9. PMID 2002851 DOI: 10.1038/350009b0  1
1991 Dreesen TD, Henikoff S, Loughney K. A pairing-sensitive element that mediates trans-inactivation is associated with the Drosophila brown gene. Genes & Development. 5: 331-40. PMID 1848201  1
1991 Henikoff S, Henikoff JG. Automated assembly of protein blocks for database searching Nucleic Acids Research. 19: 6565-6572. PMID 1754394 DOI: 10.1093/nar/19.23.6565  1
1991 Henikoff S. Playing with blocks: Some pitfalls of forcing multiple alignments New Biologist. 3: 1148-1154. PMID 1669287  1
1990 Henikoff S. Position-effect variegation after 60 years Trends in Genetics. 6: 422-426. PMID 2087785 DOI: 10.1016/0168-9525(90)90304-O  1
1990 Endow SA, Henikoff S, Soler-Niedziela L. Mediation of meiotic and early mitotic chromosome segregation in Drosophila by a protein related to kinesin Nature. 345: 81-83. PMID 1691829  1
1989 Henikoff S, Smith JM. The human mRNA that provides the N-terminus of chimeric G6PD encodes GMP reductase Cell. 58: 1021-1022. PMID 2570640 DOI: 10.1016/0092-8674(89)90498-4  1
1989 Henikoff S, Dreesen TD. Trans-inactivation of the Drosophila brown gene: evidence for transcriptional repression and somatic pairing dependence Proceedings of the National Academy of Sciences of the United States of America. 86: 6704-6708. PMID 2505257  1
1989 Johnson D, Henikoff S. A moveable 5' splice site in adenine phosphoribosyltransferase genes of Drosophila species Molecular and Cellular Biology. 9: 2220-2223. PMID 2501662  1
1988 Henikoff S, Wallace JC. Detection of protein similarities using nucleotide sequence databases Nucleic Acids Research. 16: 6191-6204. PMID 3135536 DOI: 10.1093/nar/16.13.6191  1
1988 Henikoff S, Plasterk RHA. Related transposons in C.elegans and D.melanogaster Nucleic Acids Research. 16: 6234. PMID 2840641 DOI: 10.1093/nar/16.13.6234  1
1987 Henikoff S. Multifunctional polypeptides for purine de novo synthesis Bioessays. 6: 8-13. PMID 3551947 DOI: 10.1002/bies.950060104  1
1987 Henikoff S. Unindirectional digestion with exonuclease III in DNA sequence analysis Methods in Enzymology. 155: 156-165. PMID 3323819  1
1987 Henikoff S, Eghtedarzadeh MK. Conserved arrangement of nested genes at the Drosophila Gart locus Genetics. 117: 711-725. PMID 3123310  1
1986 Eghtedarzadeh MK, Henikoff S. Use of oligonucleotides to generate large deletions Nucleic Acids Research. 14: 5115. PMID 3460029 DOI: 10.1093/nar/14.12.5115  1
1986 Henikoff S. The Saccharomyces cerevisiae ADE5,7 protein is homologous to overlapping Drosophila melanogaster Gart polypeptides Journal of Molecular Biology. 190: 519-528. PMID 3097325 DOI: 10.1016/0022-2836(86)90238-X  1
1986 Henikoff S, Keene MA, Fechtel K, Fristrom JW. Gene within a gene: nested Drosophila genes encode unrelated proteins on opposite DNA strands. Cell. 44: 33-42. PMID 3079672 DOI: 10.1016/0092-8674(86)90482-4  1
1984 Henikoff S, Cohen EH. Sequences responsible for transcription termination on a gene segment in Saccharomyces cerevisiae. Molecular and Cellular Biology. 4: 1515-20. PMID 6436686  1
1984 Henikoff S. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing Gene. 28: 351-359. PMID 6235151 DOI: 10.1016/0378-1119(84)90153-7  1
1983 Henikoff S, Sloan JS, Kelly JD. A Drosophila metabolic gene transcript is alternatively processed Cell. 34: 405-414. PMID 6413075 DOI: 10.1016/0092-8674(83)90374-4  1
1983 Henikoff S. Cloning exons for mapping of transcription: Characterization of the Drosophila melanogaster alcohol dehydrogenise gene Nucleic Acids Research. 11: 4735-4752. PMID 6410356 DOI: 10.1093/nar/11.14.4735  1
1983 Henikoff S, Kelly JD, Cohen EH. Transcription terminates in yeast distal to a control sequence. Cell. 33: 607-14. PMID 6305514 DOI: 10.1016/0092-8674(83)90441-5  1
1983 Henikoff S, Furlong CE. Sequence of a Drosophila DNA segment that functions in Saccharomyces Cerevisiae and its regulation by a yeast promoter Nucleic Acids Research. 11: 789-800. PMID 6300768 DOI: 10.1093/nar/11.3.789  1
1981 Henikoff S. Position-effect variegation and chromosome structure of a heat shock puff in Drosophila Chromosoma. 83: 381-393. PMID 6168446 DOI: 10.1007/BF00327360  1
1977 Henikoff S, Meselson M. Transcription at two heat shock loci in Drosophila Cell. 12: 441-451. PMID 410501 DOI: 10.1016/0092-8674(77)90120-9  1
1975 McKenzie SL, Henikoff S, Meselson M. Localization of RNA from heat induced polysomes at puff sites in Drosophila melanogaster Proceedings of the National Academy of Sciences of the United States of America. 72: 1117-1121. PMID 805422 DOI: 10.1073/PNAS.72.3.1117  1
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