| Year |
Citation |
Score |
| 2023 |
Walters K, Sajek MP, Murphy E, Issaian A, Baldwin A, Harrison E, Daniels M, Haines J, Hansen K, D'Alessandro A, Mukherjee N. Small molecule inhibition of multiple RNA binding proteins by Ro-08-2750 underlies Musashi-2 independent phenotypes. Rna (New York, N.Y.). PMID 37369529 DOI: 10.1261/rna.079605.123 |
0.401 |
|
| 2021 |
Baldwin A, Morris AR, Mukherjee N. An Easy, Cost-Effective, and Scalable Method to Deplete Human Ribosomal RNA for RNA-seq. Current Protocols. 1: e176. PMID 34165268 DOI: 10.1002/cpz1.176 |
0.382 |
|
| 2021 |
Fu R, Wellman K, Baldwin A, Rege J, Walters K, Hirsekorn A, Riemondy K, Rainey WE, Mukherjee N. RNA-binding proteins regulate aldosterone homeostasis in human steroidogenic cells. Rna (New York, N.Y.). PMID 34074709 DOI: 10.1261/rna.078727.121 |
0.439 |
|
| 2021 |
Rothamel K, Arcos S, Kim B, Reasoner C, Lisy S, Mukherjee N, Ascano M. ELAVL1 primarily couples mRNA stability with the 3' UTRs of interferon-stimulated genes. Cell Reports. 35: 109178. PMID 34038724 DOI: 10.1016/j.celrep.2021.109178 |
0.447 |
|
| 2019 |
Szcześniak MW, Wanowska E, Mukherjee N, Ohler U, Makałowska I. Towards a deeper annotation of human lncRNAs. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. PMID 31128317 DOI: 10.1016/J.Bbagrm.2019.05.003 |
0.666 |
|
| 2019 |
Wessels HH, Lebedeva S, Hirsekorn A, Wurmus R, Akalin A, Mukherjee N, Ohler U. Global identification of functional microRNA-mRNA interactions in Drosophila. Nature Communications. 10: 1626. PMID 30967537 DOI: 10.1038/S41467-019-09586-Z |
0.673 |
|
| 2019 |
Wellman K, Riemondy K, Gillen A, Mukherjee N. SAT-LB063 The ZFP36 Family of RNA-Binding Proteins Regulate Human Steroidogenesis Journal of the Endocrine Society. 3. DOI: 10.1210/Js.2019-Sat-Lb063 |
0.485 |
|
| 2018 |
Mukherjee N, Wessels HH, Lebedeva S, Sajek M, Ghanbari M, Garzia A, Munteanu A, Yusuf D, Farazi T, Hoell JI, Akat KM, Akalin A, Tuschl T, Ohler U. Deciphering human ribonucleoprotein regulatory networks. Nucleic Acids Research. PMID 30517751 DOI: 10.1093/Nar/Gky1185 |
0.73 |
|
| 2018 |
Munteanu A, Mukherjee N, Ohler U. SSMART: Sequence-structure motif identification for RNA-binding proteins. Bioinformatics (Oxford, England). PMID 29893814 DOI: 10.1093/bioinformatics/bty404 |
0.712 |
|
| 2017 |
Milek M, Imami K, Mukherjee N, De Bortoli F, Zinnall U, Hazapis O, Trahan C, Oeffinger M, Heyd F, Ohler U, Selbach M, Landthaler M. DDX54 regulates transcriptome dynamics during DNA damage response. Genome Research. PMID 28596291 DOI: 10.1101/Gr.218438.116 |
0.687 |
|
| 2016 |
Mukherjee N, Calviello L, Hirsekorn A, de Pretis S, Pelizzola M, Ohler U. Integrative classification of human coding and noncoding genes through RNA metabolism profiles. Nature Structural & Molecular Biology. PMID 27870833 DOI: 10.1038/Nsmb.3325 |
0.679 |
|
| 2016 |
Huang YH, Peng W, Furuuchi N, Gerhart JV, Rhodes K, Mukherjee N, Jimbo M, Gonye GE, Brody JR, Getts RC, Sawicki JA. Delivery of therapeutics targeting the mRNA-binding protein HuR using 3DNA nanocarriers suppresses ovarian tumor growth. Cancer Research. PMID 26921342 DOI: 10.1158/0008-5472.Can-15-2073 |
0.381 |
|
| 2016 |
Wessels HH, Hirsekorn A, Ohler U, Mukherjee N. Identifying RBP Targets with RIP-seq. Methods in Molecular Biology (Clifton, N.J.). 1358: 141-52. PMID 26463382 DOI: 10.1007/978-1-4939-3067-8_9 |
0.708 |
|
| 2015 |
Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M, Landthaler M, Obermayer B, Ohler U. Detecting actively translated open reading frames in ribosome profiling data. Nature Methods. PMID 26657557 DOI: 10.1038/Nmeth.3688 |
0.673 |
|
| 2014 |
Mitra S, Mukherjee N, Das S, Das P, Panda CK, Chakrabarti J. Anomalous altered expressions of downstream gene-targets in TP53-miRNA pathways in head and neck cancer. Scientific Reports. 4: 6280. PMID 25186767 DOI: 10.1038/srep06280 |
0.306 |
|
| 2014 |
Farazi TA, Leonhardt CS, Mukherjee N, Mihailovic A, Li S, Max KE, Meyer C, Yamaji M, Cekan P, Jacobs NC, Gerstberger S, Bognanni C, Larsson E, Ohler U, Tuschl T. Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets. Rna (New York, N.Y.). 20: 1090-102. PMID 24860013 DOI: 10.1261/Rna.045005.114 |
0.729 |
|
| 2014 |
Mukherjee N, Jacobs NC, Hafner M, Kennington EA, Nusbaum JD, Tuschl T, Blackshear PJ, Ohler U. Global target mRNA specification and regulation by the RNA-binding protein ZFP36. Genome Biology. 15: R12. PMID 24401661 DOI: 10.1186/Gb-2014-15-1-R12 |
0.74 |
|
| 2013 |
Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U. Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data. Genome Research. 23: 1730-9. PMID 23816784 DOI: 10.1101/Gr.149310.112 |
0.631 |
|
| 2013 |
Majoros WH, Lekprasert P, Mukherjee N, Skalsky RL, Corcoran DL, Cullen BR, Ohler U. MicroRNA target site identification by integrating sequence and binding information. Nature Methods. 10: 630-3. PMID 23708386 DOI: 10.1038/Nmeth.2489 |
0.663 |
|
| 2012 |
Ascano M, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T. FMRP targets distinct mRNA sequence elements to regulate protein expression. Nature. 492: 382-6. PMID 23235829 DOI: 10.1038/Nature11737 |
0.703 |
|
| 2011 |
Gottwein E, Corcoran DL, Mukherjee N, Skalsky RL, Hafner M, Nusbaum JD, Shamulailatpam P, Love CL, Dave SS, Tuschl T, Ohler U, Cullen BR. Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. Cell Host & Microbe. 10: 515-26. PMID 22100165 DOI: 10.1016/J.Chom.2011.09.012 |
0.645 |
|
| 2011 |
Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U. PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. Genome Biology. 12: R79. PMID 21851591 DOI: 10.1186/Gb-2011-12-8-R79 |
0.76 |
|
| 2011 |
Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M, Tuschl T, Ohler U, Keene JD. Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability. Molecular Cell. 43: 327-39. PMID 21723170 DOI: 10.1016/J.Molcel.2011.06.007 |
0.785 |
|
| 2010 |
Morris AR, Mukherjee N, Keene JD. Systematic analysis of posttranscriptional gene expression. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 162-80. PMID 20836020 DOI: 10.1002/Wsbm.54 |
0.697 |
|
| 2010 |
Neplioueva V, Dobrikova EY, Mukherjee N, Keene JD, Gromeier M. Tissue type-specific expression of the dsRNA-binding protein 76 and genome-wide elucidation of its target mRNAs. Plos One. 5: e11710. PMID 20668518 DOI: 10.1371/Journal.Pone.0011710 |
0.69 |
|
| 2009 |
Mukherjee N, Lager PJ, Friedersdorf MB, Thompson MA, Keene JD. Coordinated posttranscriptional mRNA population dynamics during T-cell activation. Molecular Systems Biology. 5: 288. PMID 19638969 DOI: 10.1038/Msb.2009.44 |
0.683 |
|
| 2009 |
Papadaki O, Milatos S, Grammenoudi S, Mukherjee N, Keene JD, Kontoyiannis DL. Control of thymic T cell maturation, deletion and egress by the RNA-binding protein HuR. Journal of Immunology (Baltimore, Md. : 1950). 182: 6779-88. PMID 19454673 DOI: 10.4049/Jimmunol.0900377 |
0.599 |
|
| 2008 |
Morris AR, Mukherjee N, Keene JD. Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets. Molecular and Cellular Biology. 28: 4093-103. PMID 18411299 DOI: 10.1128/Mcb.00155-08 |
0.705 |
|
| 2007 |
Gottwein E, Mukherjee N, Sachse C, Frenzel C, Majoros WH, Chi JT, Braich R, Manoharan M, Soutschek J, Ohler U, Cullen BR. A viral microRNA functions as an orthologue of cellular miR-155. Nature. 450: 1096-9. PMID 18075594 DOI: 10.1038/Nature05992 |
0.624 |
|
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