Lori Wallrath - Related publications

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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kumar VC, Pai R. Genes of the month: H3.3 histone genes: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34667098 DOI: 10.1136/jclinpath-2021-207857   
2021 Nirala NK, Li Q, Ghule PN, Chen HJ, Li R, Zhu LJ, Wang R, Rice NP, Mao J, Stein JL, Stein GS, van Wijnen AJ, Ip YT. Hinfp is a guardian of the somatic genome by repressing transposable elements. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34620709 DOI: 10.1073/pnas.2100839118   
2021 Jethmalani Y, Tran K, Negesse MY, Sun W, Ramos M, Jaiswal D, Jezek M, Amos S, Garcia EJ, Park D, Green EM. Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres. Life Science Alliance. 4. PMID 34625508 DOI: 10.26508/lsa.202101126   
2021 Choi J, Ryoo ZY, Cho DH, Lee HS, Ryu HY. Trans-tail regulation-mediated suppression of cryptic transcription. Experimental & Molecular Medicine. PMID 34845331 DOI: 10.1038/s12276-021-00711-x   
2021 Roopa, Priya B, Bhalla V, Kumar M, Kumar N. Fluorescent molecular probe-based activity and inhibition monitoring of histone deacetylases. Chemical Communications (Cambridge, England). 57: 11153-11164. PMID 34613324 DOI: 10.1039/d1cc04034k   
2021 Murawska M, Greenstein RA, Schauer T, Olsen KCF, Ng H, Ladurner AG, Al-Sady B, Braun S. The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states. Cell Reports. 37: 109944. PMID 34731638 DOI: 10.1016/j.celrep.2021.109944   
2021 Leonen CJA, Shimada M, Weller CE, Nakadai T, Hsu PL, Tyson EL, Mishra A, Shelton PMM, Sadilek M, Hawkins RD, Zheng N, Roeder RG, Chatterjee C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife. 10. PMID 34747692 DOI: 10.7554/eLife.67952   
2021 Soffers JHM, Alcantara SG, Li X, Shao W, Seidel CW, Li H, Zeitlinger J, Abmayr SM, Workman JL. The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters. Plos Genetics. 17: e1009668. PMID 34807910 DOI: 10.1371/journal.pgen.1009668   
2021 de la Fuente R, Pratto F, Hernández-Hernández A, Manterola M, López-Jiménez P, Gómez R, Viera A, Parra MT, Kouznetsova A, Camerini-Otero RD, Page J. Epigenetic Dysregulation of Mammalian Male Meiosis Caused by Interference of Recombination and Synapsis. Cells. 10. PMID 34571960 DOI: 10.3390/cells10092311   
2021 Aldera AP, Govender D. Gene of the month: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34782425 DOI: 10.1136/jclinpath-2021-207751   
2021 Quan H, Tian H, Liu S, Xue Y, Zhang Y, Xie W, Gao YQ. Progressive Domain Segregation in Early Embryonic Development and Underlying Correlation to Genetic and Epigenetic Changes. Cells. 10. PMID 34685501 DOI: 10.3390/cells10102521   
2021 Kumar D, Cinghu S, Oldfield AJ, Yang P, Jothi R. Decoding the function of bivalent chromatin in development and cancer. Genome Research. PMID 34667120 DOI: 10.1101/gr.275736.121   
2021 Nakabayashi Y, Seki M. Transcription destabilizes centromere function. Biochemical and Biophysical Research Communications. 586: 150-156. PMID 34844121 DOI: 10.1016/j.bbrc.2021.11.077   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Lai D, Huang X, Wang C, Ow DW. Arabidopsis OXIDATIVE STRESS 3 enhances stress tolerance in Schizosaccharomyces pombe by promoting histone subunit replacement that upregulates drug-resistant genes. Genetics. 219. PMID 34740252 DOI: 10.1093/genetics/iyab149   
2021 Zhang J, Gao X, Yu L. Roles of Histone Deacetylases in Acute Myeloid Leukemia With Fusion Proteins. Frontiers in Oncology. 11: 741746. PMID 34540702 DOI: 10.3389/fonc.2021.741746   
2021 Bhagwat M, Nagar S, Kaur P, Mehta R, Vancurova I, Vancura A. Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters. The Journal of Biological Chemistry. 101246. PMID 34582893 DOI: 10.1016/j.jbc.2021.101246   
2021 Swygert SG, Lin D, Portillo-Ledesma S, Lin PY, Hunt DR, Kao CF, Schlick T, Noble WS, Tsukiyama T. Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells. Elife. 10. PMID 34734806 DOI: 10.7554/eLife.72062   
2021 Reddy D, Bhattacharya S, Shah S, Rashid M, Gupta S. DNA methylation mediated downregulation of histone H3 variant H3.3 affects cell proliferation contributing to the development of HCC. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 1868: 166284. PMID 34626773 DOI: 10.1016/j.bbadis.2021.166284   
2021 Valencia AM, Pașca SP. Chromatin dynamics in human brain development and disease. Trends in Cell Biology. PMID 34610892 DOI: 10.1016/j.tcb.2021.09.001   
2021 Fletcher A, Zhao R, Enciso G. Non-cooperative mechanism for bounded and ultrasensitive chromatin remodeling. Journal of Theoretical Biology. 110946. PMID 34717936 DOI: 10.1016/j.jtbi.2021.110946   
2021 Markaki Y, Gan Chong J, Wang Y, Jacobson EC, Luong C, Tan SYX, Jachowicz JW, Strehle M, Maestrini D, Banerjee AK, Mistry BA, Dror I, Dossin F, Schöneberg J, Heard E, et al. Xist nucleates local protein gradients to propagate silencing across the X chromosome. Cell. PMID 34813726 DOI: 10.1016/j.cell.2021.10.022   
2021 Ding Q, Edwards MM, Wang N, Zhu X, Bracci AN, Hulke ML, Hu Y, Tong Y, Hsiao J, Charvet CJ, Ghosh S, Handsaker RE, Eggan K, Merkle FT, Gerhardt J, et al. The genetic architecture of DNA replication timing in human pluripotent stem cells. Nature Communications. 12: 6746. PMID 34799581 DOI: 10.1038/s41467-021-27115-9   
2021 Sun J, Chen J, Amar K, Wu Y, Jiang M, Wang N. LAP2β transmits force to upregulate genes via chromatin domain stretching but not compression. Acta Biomaterialia. PMID 34700042 DOI: 10.1016/j.actbio.2021.10.029   
2021 Groh S, Milton AV, Marinelli LK, Sickinger CV, Russo A, Bollig H, de Almeida GP, Schmidt A, Forné I, Imhof A, Schotta G. Morc3 silences endogenous retroviruses by enabling Daxx-mediated histone H3.3 incorporation. Nature Communications. 12: 5996. PMID 34650047 DOI: 10.1038/s41467-021-26288-7   
2021 Kim HS. Genetic Interaction Between Site-Specific Epigenetic Marks and Roles of H4v in Transcription Termination in . Frontiers in Cell and Developmental Biology. 9: 744878. PMID 34722526 DOI: 10.3389/fcell.2021.744878   
2021 Rippe K. Liquid-Liquid Phase Separation in Chromatin. Cold Spring Harbor Perspectives in Biology. PMID 34127447 DOI: 10.1101/cshperspect.a040683   
2021 Li X, Li H, Jing Q, Wang M, Hu T, Li L, Zhang Q, Liu M, Fu YV, Han J, Su D. Structural insights into multifunctionality of human FACT complex subunit hSSRP1. The Journal of Biological Chemistry. 101360. PMID 34756889 DOI: 10.1016/j.jbc.2021.101360   
2021 Joo YJ, Buratowski S. Gds1 interacts with NuA4 to promote H4 acetylation at ribosomal protein genes. Molecular and Cellular Biology. MCB0037321. PMID 34694912 DOI: 10.1128/MCB.00373-21   
2021 Galloy M, Lachance C, Cheng X, Distéfano-Gagné F, Côté J, Fradet-Turcotte A. Approaches to Study Native Chromatin-Modifying Complex Activities and Functions. Frontiers in Cell and Developmental Biology. 9: 729338. PMID 34604228 DOI: 10.3389/fcell.2021.729338   
2021 Popova LV, Nagarajan P, Lovejoy CM, Sunkel BD, Gardner ML, Wang M, Freitas MA, Stanton BZ, Parthun MR. Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones. Nucleic Acids Research. PMID 34788845 DOI: 10.1093/nar/gkab1044   
2021 Ding X, Liu X, Jiang G, Li Z, Song Y, Zhang D, Jiang Y, Duan X. SlJMJ7 orchestrates tomato fruit ripening via crosstalk between H3K4me3 and DML2-mediated DNA demethylation. The New Phytologist. PMID 34729792 DOI: 10.1111/nph.17838   
2021 Zuo W, Chen G, Gao Z, Li S, Chen Y, Huang C, Chen J, Chen Z, Lei M, Bian Q. Stage-resolved Hi-C analyses reveal meiotic chromosome organizational features influencing homolog alignment. Nature Communications. 12: 5827. PMID 34625553 DOI: 10.1038/s41467-021-26033-0   
2021 Jo H, Kim T, Chun Y, Jung I, Lee D. A compendium of chromatin contact maps reflecting regulation by chromatin remodelers in budding yeast. Nature Communications. 12: 6380. PMID 34737268 DOI: 10.1038/s41467-021-26629-6   
2021 Suganuma T, Workman JL. Nucleotide Metabolism Behind Epigenetics. Frontiers in Endocrinology. 12: 731648. PMID 34526971 DOI: 10.3389/fendo.2021.731648   
2021 Chen B, Ali S, Zhang X, Zhang Y, Wang M, Zhang Q, Xie L. Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. Bmc Genomics. 22: 772. PMID 34711171 DOI: 10.1186/s12864-021-08063-6   
2021 Zhou C, Zhou QW, Cheng S, Li GL. Research progress of CTCF in mediating 3D genome formation and regulating gene expression. Yi Chuan = Hereditas. 43: 816-821. PMID 34702695 DOI: 10.16288/j.yczz.21-326   
2021 Bočkaj I, Martini TEI, de Camargo Magalhães ES, Bakker PL, Meeuwsen-de Boer TGJ, Armandari I, Meuleman SL, Mondria MT, Stok C, Kok YP, Bakker B, Wardenaar R, Seiler J, Broekhuis MJC, van den Bos H, et al. The H3.3K27M oncohistone affects replication stress outcome and provokes genomic instability in pediatric glioma. Plos Genetics. 17: e1009868. PMID 34752469 DOI: 10.1371/journal.pgen.1009868   
2021 Gautam P, Sharma A, Bhatnagar A. Global histone modification analysis reveals hypoacetylated H3 and H4 histones in B Cells from systemic lupus erythematosus patients. Immunology Letters. 240: 41-45. PMID 34614442 DOI: 10.1016/j.imlet.2021.09.007   
2021 Ide S, Sasaki A, Kawamoto Y, Bando T, Sugiyama H, Maeshima K. Telomere-specific chromatin capture using a pyrrole-imidazole polyamide probe for the identification of proteins and non-coding RNAs. Epigenetics & Chromatin. 14: 46. PMID 34627342 DOI: 10.1186/s13072-021-00421-8   
2021 Poulet A, Mishra LN, Téletchéa S, Hayes JJ, Jacob Y, Thiriet C, Duc C. Identification and characterization of histones in evidence a phylogenetic vicinity of Mycetozoans to the animal kingdom. Nar Genomics and Bioinformatics. 3: lqab107. PMID 34805990 DOI: 10.1093/nargab/lqab107   
2021 Shaukat A, Khan MHF, Ahmad H, Umer Z, Tariq M. Interplay Between BALL and CREB Binding Protein Maintains H3K27 Acetylation on Active Genes in . Frontiers in Cell and Developmental Biology. 9: 740866. PMID 34650987 DOI: 10.3389/fcell.2021.740866   
2021 Kumar S. SWI/SNF (BAF) complexes: From framework to a functional role in endothelial mechanotransduction. Current Topics in Membranes. 87: 171-198. PMID 34696885 DOI: 10.1016/bs.ctm.2021.09.006   
2021 Shen CH, Allan J. MNase Digestion Protection Patterns of the Linker DNA in Chromatosomes. Cells. 10. PMID 34571888 DOI: 10.3390/cells10092239   
2021 Van Rechem C, Ji F, Chakraborty D, Black JC, Sadreyev RI, Whetstine JR. Collective regulation of chromatin modifications predicts replication timing during cell cycle. Cell Reports. 37: 109799. PMID 34610305 DOI: 10.1016/j.celrep.2021.109799   
2021 Bennett SA, Cobos SN, Mirzakandova M, Fallah M, Son E, Angelakakis G, Rana N, Hugais M, Torrente MP. Trichostatin A Relieves Growth Suppression and Restores Histone Acetylation at Specific Sites in a FUS ALS/FTD Yeast Model. Biochemistry. PMID 34788013 DOI: 10.1021/acs.biochem.1c00455   
2021 Yin Y, Fan H, Zhou B, Hu Y, Fan G, Wang J, Zhou F, Nie W, Zhang C, Liu L, Zhong Z, Zhu W, Liu G, Lin Z, Liu C, et al. Molecular mechanisms and topological consequences of drastic chromosomal rearrangements of muntjac deer. Nature Communications. 12: 6858. PMID 34824214 DOI: 10.1038/s41467-021-27091-0   
2021 Shaheen N, Akhtar J, Umer Z, Khan MHF, Bakhtiari MH, Saleem M, Faisal A, Tariq M. Polycomb Requires for Maintaining Gene Silencing in . Frontiers in Cell and Developmental Biology. 9: 727972. PMID 34660585 DOI: 10.3389/fcell.2021.727972   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Pavlova P, van Zanten M, Snoek BL, de Jong H, Fransz P. 2D morphometric analysis of Arabidopsis thaliana nuclei reveals characteristic profiles of different cell types and accessions. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 34665365 DOI: 10.1007/s10577-021-09673-2