| Year |
Citation |
Score |
| 2023 |
Robinson D, Vanacloig-Pedros E, Cai R, Place M, Hose J, Gasch AP. Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast. Biorxiv : the Preprint Server For Biology. PMID 37503218 DOI: 10.1101/2023.05.11.540375 |
0.427 |
|
| 2023 |
Robinson D, Vanacloig-Pedros E, Cai R, Place M, Hose J, Gasch AP. Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast. G3 (Bethesda, Md.). PMID 37481264 DOI: 10.1093/g3journal/jkad159 |
0.428 |
|
| 2022 |
Vanacloig-Pedros E, Fisher KJ, Liu L, Debrauske DJ, Young MKM, Place M, Hittinger CT, Sato TK, Gasch AP. Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions. Fems Yeast Research. PMID 35883225 DOI: 10.1093/femsyr/foac036 |
0.308 |
|
| 2021 |
Robinson D, Place M, Hose J, Jochem A, Gasch AP. Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories. Elife. 10. PMID 34338637 DOI: 10.7554/eLife.70564 |
0.424 |
|
| 2020 |
MacGilvray ME, Shishkova E, Place M, Wagner ER, Coon JJ, Gasch AP. The phosphoproteome response to dithiothreitol reveals unique versus shared features of Saccharomyces cerevisiae stress responses. Journal of Proteome Research. PMID 32597660 DOI: 10.1021/Acs.Jproteome.0C00253 |
0.361 |
|
| 2020 |
Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP. The genetic basis of aneuploidy tolerance in wild yeast. Elife. 9. PMID 31909711 DOI: 10.7554/Elife.52063 |
0.359 |
|
| 2019 |
Wagner ER, Myers KS, Riley NM, Coon JJ, Gasch AP. PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production. Plos One. 14: e0212389. PMID 31112537 DOI: 10.1371/Journal.Pone.0212389 |
0.33 |
|
| 2019 |
Myers KS, Riley NM, MacGilvray ME, Sato TK, McGee M, Heilberger J, Coon JJ, Gasch AP. Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. Plos Genetics. 15: e1008037. PMID 30856163 DOI: 10.1371/Journal.Pgen.1008037 |
0.332 |
|
| 2018 |
Nemec CM, Singh AK, Ali A, Tseng SC, Syal K, Ringelberg KJ, Ho YH, Hintermair C, Ahmad MF, Kar RK, Gasch AP, Akhtar MS, Eick D, Ansari AZ. Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner. Nature Chemical Biology. PMID 30598543 DOI: 10.1038/S41589-018-0194-1 |
0.395 |
|
| 2018 |
Ho YH, Shishkova E, Hose J, Coon JJ, Gasch AP. Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress. Current Biology : Cb. PMID 30078561 DOI: 10.1016/J.Cub.2018.06.044 |
0.362 |
|
| 2018 |
Higgins DA, Young MK, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, et al. Natural Variation in the Multidrug Efflux Pump Underlies Ionic Liquid Tolerance in Yeast. Genetics. PMID 30045857 DOI: 10.1534/Genetics.118.301161 |
0.369 |
|
| 2018 |
MacGilvray ME, Shishkova E, Chasman D, Place M, Gitter A, Coon JJ, Gasch AP. Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. Plos Computational Biology. 13: e1006088. PMID 29738528 DOI: 10.1371/Journal.Pcbi.1006088 |
0.347 |
|
| 2018 |
Sardi M, Gasch AP. Genetic background effects in quantitative genetics: gene-by-system interactions. Current Genetics. PMID 29644456 DOI: 10.1007/S00294-018-0835-7 |
0.38 |
|
| 2018 |
Sardi M, Paithane V, Place M, Robinson E, Hose J, Wohlbach DJ, Gasch AP. Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance. Plos Genetics. 14: e1007217. PMID 29474395 DOI: 10.1371/Journal.Pgen.1007217 |
0.422 |
|
| 2017 |
Gasch AP, Yu FB, Hose J, Escalante LE, Place M, Bacher R, Kanbar J, Ciobanu D, Sandor L, Grigoriev IV, Kendziorski C, Quake SR, McClean MN. Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. Plos Biology. 15: e2004050. PMID 29240790 DOI: 10.1371/Journal.Pbio.2004050 |
0.408 |
|
| 2017 |
Cesnik AJ, Shortreed MR, Schaffer LV, Knoener RA, Frey BL, Scalf M, Solntsev SK, Dai Y, Gasch AP, Smith LM. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families. Journal of Proteome Research. PMID 29195273 DOI: 10.1021/Acs.Jproteome.7B00685 |
0.351 |
|
| 2017 |
Muir VS, Gasch AP, Anderson P. The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans. G3 (Bethesda, Md.). PMID 29122854 DOI: 10.1534/G3.117.300254 |
0.405 |
|
| 2017 |
Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith LM. Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins. Analytical Chemistry. PMID 28654248 DOI: 10.1021/Acs.Analchem.7B01784 |
0.399 |
|
| 2017 |
Sardi M, Gasch AP. Incorporating comparative genomics into the Design-Test-Learn cycle of microbial strain engineering. Fems Yeast Research. PMID 28637316 DOI: 10.1093/Femsyr/Fox042 |
0.303 |
|
| 2017 |
Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ. Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465432 DOI: 10.1073/Pnas.1700128114 |
0.396 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Gasch AP, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/Journal.Pgen.1006372 |
0.35 |
|
| 2016 |
Sardi M, Rovinskiy N, Zhang Y, Gasch AP. Leveraging genetic background effects in Saccharomyces cerevisiae to improve lignocellulosic hydrolysate tolerance. Applied and Environmental Microbiology. PMID 27451446 DOI: 10.1128/Aem.01603-16 |
0.439 |
|
| 2016 |
Guillen-Ahlers H, Rao PK, Levenstein ME, Kennedy-Darling J, Perumalla DS, Jadhav AY, Glenn JP, Ludwig-Kubinski A, Drigalenko E, Montoya MJ, Göring HH, Anderson CD, Scalf M, Gildersleeve HI, Cole R, ... ... Gasch AP, et al. HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae. Genomics. PMID 27184763 DOI: 10.1016/J.Ygeno.2016.05.002 |
0.332 |
|
| 2016 |
McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/G3.116.029389 |
0.404 |
|
| 2016 |
Gasch AP, Hose J, Newton MA, Sardi M, Yong M, Wang Z. Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. Elife. 5. PMID 26949252 DOI: 10.7554/Elife.14409 |
0.438 |
|
| 2016 |
Gasch AP, Hose J, Newton MA, Sardi M, Yong M, Wang Z. Author response: Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution Elife. DOI: 10.7554/Elife.14409.010 |
0.459 |
|
| 2016 |
Sverchkov Y, Gasch A, Craven M. Learning context-specific nested effects models from gene knockdown data F1000research. 5. DOI: 10.7490/F1000Research.1112661.1 |
0.352 |
|
| 2015 |
Clowers KJ, Will JL, Gasch AP. A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae. Molecular Ecology. PMID 26518477 DOI: 10.1111/Mec.13439 |
0.431 |
|
| 2015 |
Ho YH, Gasch AP. Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling. Current Genetics. 61: 503-11. PMID 25957506 DOI: 10.1007/S00294-015-0491-0 |
0.316 |
|
| 2015 |
Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. Dosage compensation can buffer copy-number variation in wild yeast. Elife. 4. PMID 25955966 DOI: 10.7554/Elife.05462 |
0.514 |
|
| 2015 |
Clowers KJ, Heilberger J, Piotrowski JS, Will JL, Gasch AP. Ecological and Genetic Barriers Differentiate Natural Populations of Saccharomyces cerevisiae. Molecular Biology and Evolution. 32: 2317-27. PMID 25953281 DOI: 10.1093/Molbev/Msv112 |
0.401 |
|
| 2014 |
Wohlbach DJ, Rovinskiy N, Lewis JA, Sardi M, Schackwitz WS, Martin JA, Deshpande S, Daum CG, Lipzen A, Sato TK, Gasch AP. Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production. Genome Biology and Evolution. 6: 2557-66. PMID 25364804 DOI: 10.1093/Gbe/Evu199 |
0.401 |
|
| 2014 |
Parreiras LS, Breuer RJ, Avanasi Narasimhan R, Higbee AJ, La Reau A, Tremaine M, Qin L, Willis LB, Bice BD, Bonfert BL, Pinhancos RC, Balloon AJ, Uppugundla N, Liu T, Li C, ... ... Gasch AP, et al. Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover. Plos One. 9: e107499. PMID 25222864 DOI: 10.1371/Journal.Pone.0107499 |
0.306 |
|
| 2014 |
Kennedy-Darling J, Guillen-Ahlers H, Shortreed MR, Scalf M, Frey BL, Kendziorski C, Olivier M, Gasch AP, Smith LM. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. PMID 24999558 DOI: 10.1021/Pr5004938 |
0.334 |
|
| 2014 |
Lewis JA, Broman AT, Will J, Gasch AP. Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains. Genetics. 198: 369-82. PMID 24970865 DOI: 10.1534/Genetics.114.167429 |
0.394 |
|
| 2014 |
Merrill AE, Hebert AS, MacGilvray ME, Rose CM, Bailey DJ, Bradley JC, Wood WW, El Masri M, Westphall MS, Gasch AP, Coon JJ. NeuCode labels for relative protein quantification. Molecular & Cellular Proteomics : McP. 13: 2503-12. PMID 24938287 DOI: 10.1074/Mcp.M114.040287 |
0.315 |
|
| 2014 |
Sato TK, Liu T, Parreiras LS, Williams DL, Wohlbach DJ, Bice BD, Ong IM, Breuer RJ, Qin L, Busalacchi D, Deshpande S, Daum C, Gasch AP, Hodge DB. Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass. Applied and Environmental Microbiology. 80: 540-54. PMID 24212571 DOI: 10.1128/Aem.01885-13 |
0.32 |
|
| 2013 |
Roy S, Lagree S, Hou Z, Thomson JA, Stewart R, Gasch AP. Integrated module and gene-specific regulatory inference implicates upstream signaling networks. Plos Computational Biology. 9: e1003252. PMID 24146602 DOI: 10.1371/Journal.Pcbi.1003252 |
0.473 |
|
| 2012 |
Lewis JA, Gasch AP. Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor. G3 (Bethesda, Md.). 2: 1607-12. PMID 23275883 DOI: 10.1534/G3.112.004127 |
0.387 |
|
| 2012 |
Guan Q, Haroon S, Bravo DG, Will JL, Gasch AP. Cellular memory of acquired stress resistance in Saccharomyces cerevisiae. Genetics. 192: 495-505. PMID 22851651 DOI: 10.1534/Genetics.112.143016 |
0.327 |
|
| 2012 |
Huebert DJ, Gasch AP. Defining flexible vs. inherent promoter architectures: the importance of dynamics and environmental considerations. Nucleus (Austin, Tex.). 3: 399-403. PMID 22751015 DOI: 10.4161/Nucl.21172 |
0.436 |
|
| 2012 |
Huebert DJ, Kuan PF, Keleş S, Gasch AP. Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators. Molecular and Cellular Biology. 32: 1645-53. PMID 22354995 DOI: 10.1128/Mcb.06170-11 |
0.486 |
|
| 2012 |
Yin WB, Amaike S, Wohlbach DJ, Gasch AP, Chiang YM, Wang CC, Bok JW, Rohlfs M, Keller NP. An Aspergillus nidulans bZIP response pathway hardwired for defensive secondary metabolism operates through aflR. Molecular Microbiology. 83: 1024-34. PMID 22283524 DOI: 10.1111/J.1365-2958.2012.07986.X |
0.359 |
|
| 2011 |
Berry DB, Guan Q, Hose J, Haroon S, Gebbia M, Heisler LE, Nislow C, Giaever G, Gasch AP. Multiple means to the same end: the genetic basis of acquired stress resistance in yeast. Plos Genetics. 7: e1002353. PMID 22102822 DOI: 10.1371/Journal.Pgen.1002353 |
0.371 |
|
| 2011 |
Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, ... ... Gasch AP, et al. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proceedings of the National Academy of Sciences of the United States of America. 108: 13212-7. PMID 21788494 DOI: 10.1073/Pnas.1103039108 |
0.427 |
|
| 2011 |
Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP. A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Molecular Systems Biology. 7: 514. PMID 21772262 DOI: 10.1038/Msb.2011.48 |
0.328 |
|
| 2010 |
Lewis JA, Elkon IM, McGee MA, Higbee AJ, Gasch AP. Exploiting natural variation in Saccharomyces cerevisiae to identify genes for increased ethanol resistance. Genetics. 186: 1197-205. PMID 20855568 DOI: 10.1534/Genetics.110.121871 |
0.391 |
|
| 2010 |
Will JL, Kim HS, Clarke J, Painter JC, Fay JC, Gasch AP. Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. Plos Genetics. 6: e1000893. PMID 20369021 DOI: 10.1371/Journal.Pgen.1000893 |
0.612 |
|
| 2010 |
Eng KH, Kvitek DJ, Keles S, Gasch AP. Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genes. Genetics. 184: 587-93. PMID 19966067 DOI: 10.1534/Genetics.109.107268 |
0.526 |
|
| 2009 |
Wohlbach DJ, Thompson DA, Gasch AP, Regev A. From elements to modules: regulatory evolution in Ascomycota fungi. Current Opinion in Genetics & Development. 19: 571-8. PMID 19879128 DOI: 10.1016/J.Gde.2009.09.007 |
0.505 |
|
| 2009 |
Kuan PF, Huebert D, Gasch A, Keles S. A non-homogeneous hidden-state model on first order differences for automatic detection of nucleosome positions. Statistical Applications in Genetics and Molecular Biology. 8: Article29. PMID 19572828 DOI: 10.2202/1544-6115.1454 |
0.326 |
|
| 2009 |
Alejandro-Osorio AL, Huebert DJ, Porcaro DT, Sonntag ME, Nillasithanukroh S, Will JL, Gasch AP. The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress. Genome Biology. 10: R57. PMID 19470158 DOI: 10.1186/Gb-2009-10-5-R57 |
0.477 |
|
| 2008 |
Kvitek DJ, Will JL, Gasch AP. Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates. Plos Genetics. 4: e1000223. PMID 18927628 DOI: 10.1371/Journal.Pgen.1000223 |
0.466 |
|
| 2008 |
Berry DB, Gasch AP. Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. Molecular Biology of the Cell. 19: 4580-7. PMID 18753408 DOI: 10.1091/Mbc.E07-07-0680 |
0.422 |
|
| 2007 |
Gasch AP. Comparative genomics of the environmental stress response in ascomycete fungi. Yeast (Chichester, England). 24: 961-76. PMID 17605132 DOI: 10.1002/Yea.1512 |
0.365 |
|
| 2006 |
Chiang DY, Nix DA, Shultzaberger RK, Gasch AP, Eisen MB. Flexible promoter architecture requirements for coactivator recruitment. Bmc Molecular Biology. 7: 16. PMID 16646957 DOI: 10.1186/1471-2199-7-16 |
0.737 |
|
| 2004 |
Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB. Conservation and evolution of cis-regulatory systems in ascomycete fungi. Plos Biology. 2: e398. PMID 15534694 DOI: 10.1371/Journal.Pbio.0020398 |
0.78 |
|
| 2004 |
Koc A, Gasch AP, Rutherford JC, Kim HY, Gladyshev VN. Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and -independent components of aging. Proceedings of the National Academy of Sciences of the United States of America. 101: 7999-8004. PMID 15141092 DOI: 10.1073/Pnas.0307929101 |
0.346 |
|
| 2002 |
Gasch AP, Eisen MB. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biology. 3: RESEARCH0059. PMID 12429058 DOI: 10.1186/Gb-2002-3-11-Research0059 |
0.782 |
|
| 2002 |
Gasch AP, Werner-Washburne M. The genomics of yeast responses to environmental stress and starvation. Functional & Integrative Genomics. 2: 181-92. PMID 12192591 DOI: 10.1007/S10142-002-0058-2 |
0.489 |
|
| 2002 |
Gasch AP. Yeast genomic expression studies using DNA microarrays. Methods in Enzymology. 350: 393-414. PMID 12073326 DOI: 10.1016/S0076-6879(02)50976-9 |
0.415 |
|
| 2002 |
Yoshimoto H, Saltsman K, Gasch AP, Li HX, Ogawa N, Botstein D, Brown PO, Cyert MS. Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 277: 31079-88. PMID 12058033 DOI: 10.1074/Jbc.M202718200 |
0.726 |
|
| 2001 |
Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Molecular Biology of the Cell. 12: 2987-3003. PMID 11598186 DOI: 10.1091/Mbc.12.10.2987 |
0.699 |
|
| 2001 |
Segal E, Taskar B, Gasch A, Friedman N, Koller D. Rich probabilistic models for gene expression. Bioinformatics (Oxford, England). 17: S243-52. PMID 11473015 DOI: 10.1093/Bioinformatics/17.Suppl_1.S243 |
0.464 |
|
| 2001 |
Carmel-Harel O, Stearman R, Gasch AP, Botstein D, Brown PO, Storz G. Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae. Molecular Microbiology. 39: 595-605. PMID 11169101 DOI: 10.1046/J.1365-2958.2001.02255.X |
0.74 |
|
| 2000 |
Lee SE, Pellicioli A, Demeter J, Vaze MP, Gasch AP, Malkova A, Brown PO, Botstein D, Stearns T, Foiani M, Haber JE. Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae. Cold Spring Harbor Symposia On Quantitative Biology. 65: 303-14. PMID 12760044 DOI: 10.1101/Sqb.2000.65.303 |
0.62 |
|
| 2000 |
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. Genomic expression programs in the response of yeast cells to environmental changes. Molecular Biology of the Cell. 11: 4241-57. PMID 11102521 DOI: 10.1091/Mbc.11.12.4241 |
0.758 |
|
| 2000 |
Lyons TJ, Gasch AP, Gaither LA, Botstein D, Brown PO, Eide DJ. Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast. Proceedings of the National Academy of Sciences of the United States of America. 97: 7957-62. PMID 10884426 DOI: 10.1073/Pnas.97.14.7957 |
0.76 |
|
| 1999 |
Spellman P, Gasch A, Eisen M, Kao C, Brown P, Botstein D. Functional clustering of genes using microarray gene expression data Nature Genetics. 23: 75-75. DOI: 10.1038/14406 |
0.75 |
|
| 1995 |
Takahashi T, Gasch A, Nishizawa N, Chua NH. The DIMINUTO gene of Arabidopsis is involved in regulating cell elongation Genes and Development. 9: 97-107. PMID 7828854 DOI: 10.1101/gad.9.1.97 |
0.303 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. Author response: Dosage compensation can buffer copy-number variation in wild yeast Elife. DOI: 10.7554/Elife.05462.023 |
0.297 |
|
| 2014 |
Sorokin EP, Gasch AP, Kimble J. Competence for chemical reprogramming of sexual fate correlates with an intersexual molecular signature in Caenorhabditis elegans. Genetics. 198: 561-75. PMID 25146970 DOI: 10.1534/Genetics.114.169409 |
0.296 |
|
| 2017 |
Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M. Recurrent rewiring and emergence of RNA regulatory networks. Proceedings of the National Academy of Sciences of the United States of America. PMID 28320951 DOI: 10.1073/Pnas.1617777114 |
0.293 |
|
| 2018 |
Sverchkov Y, Ho YH, Gasch A, Craven M. Context-Specific Nested Effects Models. Research in Computational Molecular Biology : ... Annual International Conference, Recomb ... : Proceedings. Recomb (Conference : 2005-). 10812: 194-210. PMID 30680375 DOI: 10.1007/978-3-319-89929-9_13 |
0.292 |
|
| 2019 |
Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP. Author response: The genetic basis of aneuploidy tolerance in wild yeast Elife. DOI: 10.7554/Elife.52063.Sa2 |
0.288 |
|
| 2016 |
Gasch AP, Payseur BA, Pool JE. The Power of Natural Variation for Model Organism Biology. Trends in Genetics : Tig. PMID 26777596 DOI: 10.1016/J.Tig.2015.12.003 |
0.275 |
|
| 2022 |
Bergen AC, Kocik RA, Hose J, McClean MN, Gasch AP. Modeling single-cell phenotypes links yeast stress acclimation to transcriptional repression and pre-stress cellular states. Elife. 11. PMID 36350693 DOI: 10.7554/eLife.82017 |
0.271 |
|
| 2016 |
Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. Correction: Dosage compensation can buffer copy-number variation in wild yeast. Elife. 5. PMID 27006204 DOI: 10.7554/Elife.15743 |
0.271 |
|
| 2018 |
Sardi M, Krause M, Heilberger J, Gasch AP. Genotype-by-Environment-by-Environment Interactions in the Transcriptomic Response to Alcohols and Anaerobiosis. G3 (Bethesda, Md.). PMID 30301737 DOI: 10.1534/G3.118.200677 |
0.262 |
|
| 2023 |
Wagner ER, Nightingale NM, Jen A, Overmyer KA, McGee M, Coon JJ, Gasch AP. PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae. Plos Genetics. 19: e1010593. PMID 37410771 DOI: 10.1371/journal.pgen.1010593 |
0.256 |
|
| 2014 |
Chasman D, Ho YH, Berry DB, Nemec CM, MacGilvray ME, Hose J, Merrill AE, Lee MV, Will JL, Coon JJ, Ansari AZ, Craven M, Gasch AP. Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. Molecular Systems Biology. 10: 759. PMID 25411400 DOI: 10.15252/Msb.20145120 |
0.25 |
|
| 1994 |
Weinreich MD, Gasch A, Reznikoff WS. Evidence that the cis preference of the Tn5 transposase is caused by nonproductive multimerization. Genes & Development. 8: 2363-74. PMID 7958902 DOI: 10.1101/Gad.8.19.2363 |
0.245 |
|
| 2015 |
Gasch AP, Yvert G. MEETING REPORT on Experimental Approaches to Evolution and Ecology Using Yeast & Other Model Systems. G3 (Bethesda, Md.). PMID 25908568 DOI: 10.1534/G3.115.018614 |
0.239 |
|
| 2017 |
Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. SCnorm: robust normalization of single-cell RNA-seq data. Nature Methods. PMID 28418000 DOI: 10.1038/Nmeth.4263 |
0.238 |
|
| 2017 |
Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M. Reply to Hogan: Direct evidence of RNA-protein interactions and rewiring. Proceedings of the National Academy of Sciences of the United States of America. PMID 29208722 DOI: 10.1073/Pnas.1717585114 |
0.237 |
|
| 2018 |
McDaniel EA, Stuecker TN, Veluvolu M, Gasch AP, Lewis JA. Independent Mechanisms for Acquired Salt Tolerance versus Growth Resumption Induced by Mild Ethanol Pretreatment in . Msphere. 3. PMID 30487155 DOI: 10.1128/mSphere.00574-18 |
0.226 |
|
| 2020 |
Sverchkov Y, Ho YH, Gasch A, Craven M. Context-Specific Nested Effects Models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32053004 DOI: 10.1089/Cmb.2019.0459 |
0.208 |
|
| 2021 |
Lee SB, Tremaine M, Place M, Liu L, Pier A, Krause DJ, Xie D, Zhang Y, Landick R, Gasch AP, Hittinger CT, Sato TK. Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae. Metabolic Engineering. PMID 34592433 DOI: 10.1016/j.ymben.2021.09.008 |
0.206 |
|
| 2022 |
Gambacorta FV, Wagner ER, Jacobson TB, Tremaine M, Muehlbauer LK, McGee MA, Baerwald JJ, Wrobel RL, Wolters JF, Place M, Dietrich JJ, Xie D, Serate J, Gajbhiye S, Liu L, ... ... Gasch AP, et al. Comparative functional genomics identifies an iron-limited bottleneck in a strain with a cytosolic-localized isobutanol pathway. Synthetic and Systems Biotechnology. 7: 738-749. PMID 35387233 DOI: 10.1016/j.synbio.2022.02.007 |
0.189 |
|
| 2020 |
Stoneman HR, Wrobel RL, Place M, Graham M, Krause DJ, De Chiara M, Liti G, Schacherer J, Landick R, Gasch AP, Sato TK, Hittinger CT. CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations. G3 (Bethesda, Md.). PMID 32963084 DOI: 10.1534/g3.120.401498 |
0.183 |
|
| 2022 |
Kocik RA, Gasch AP. Breadth and Specificity in Pleiotropic Protein Kinase A Activity and Environmental Responses. Frontiers in Cell and Developmental Biology. 10: 803392. PMID 35252178 DOI: 10.3389/fcell.2022.803392 |
0.168 |
|
| 2021 |
Scopel EFC, Hose J, Bensasson D, Gasch AP. Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages. Genetics. PMID 33734361 DOI: 10.1093/genetics/iyab015 |
0.167 |
|
| 2021 |
Escalante LE, Gasch AP. The role of stress-activated RNA-protein granules in surviving adversity. Rna (New York, N.Y.). PMID 33931500 DOI: 10.1261/rna.078738.121 |
0.151 |
|
| 2023 |
Wagner ER, Gasch AP. Advances in Engineering for Xylose Fermentation and Biofuel Production: Balancing Growth, Metabolism, and Defense. Journal of Fungi (Basel, Switzerland). 9. PMID 37623557 DOI: 10.3390/jof9080786 |
0.146 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, ... ... Gasch AP, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447 |
0.138 |
|
| 2023 |
Alder-Rangel A, Bailão AM, Herrera-Estrella A, Rangel AEA, Gácser A, Gasch AP, Campos CBL, Peters C, Camelim F, Verde F, Gadd GM, Braus G, Eisermann I, Quinn J, Latgé JP, et al. The IV International Symposium on Fungal Stress and the XIII International Fungal Biology Conference. Fungal Biology. 127: 1157-1179. PMID 37495306 DOI: 10.1016/j.funbio.2023.04.006 |
0.099 |
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