Hannele Ruohola-Baker - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
reproduction

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Moody JD, Levy S, Mathieu J, Xing Y, Kim W, Dong C, Tempel W, Robitaille AM, Dang LT, Ferreccio A, Detraux D, Sidhu S, Zhu L, Carter L, Xu C, ... ... Ruohola-Baker H, et al. First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor. Proceedings of the National Academy of Sciences of the United States of America. PMID 28864533 DOI: 10.1073/pnas.1706907114  0.32
2015 Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Valensisi C, Bielas JH, Ericson NG, ... ... Ruohola-Baker H, et al. The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. Nature Cell Biology. PMID 26571212 DOI: 10.1038/ncb3264  0.92
2015 Kuppusamy KT, Jones DC, Sperber H, Madan A, Fischer KA, Rodriguez ML, Pabon L, Zhu WZ, Tulloch NL, Yang X, Sniadecki NJ, Laflamme MA, Ruzzo WL, Murry CE, Ruohola-Baker H. Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes. Proceedings of the National Academy of Sciences of the United States of America. 112: E2785-94. PMID 25964336 DOI: 10.1073/pnas.1424042112  0.92
2015 Xing Y, Su TT, Ruohola-Baker H. Tie-mediated signal from apoptotic cells protects stem cells in Drosophila melanogaster Nature Communications. 6. DOI: 10.1038/ncomms8058  0.92
2014 Yang X, Rodriguez M, Pabon L, Fischer KA, Reinecke H, Regnier M, Sniadecki NJ, Ruohola-Baker H, Murry CE. Tri-iodo-l-thyronine promotes the maturation of human cardiomyocytes-derived from induced pluripotent stem cells. Journal of Molecular and Cellular Cardiology. 72: 296-304. PMID 24735830 DOI: 10.1016/j.yjmcc.2014.04.005  0.92
2014 Sperber H, Beem A, Shannon S, Jones R, Banik P, Chen Y, Ku S, Varani G, Yao S, Ruohola-Baker H. miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure. Rna (New York, N.Y.). 20: 621-31. PMID 24677349 DOI: 10.1261/rna.043943.113  0.92
2014 Mathieu J, Zhou W, Xing Y, Sperber H, Ferreccio A, Agoston Z, Kuppusamy KT, Moon RT, Ruohola-Baker H. Hypoxia-inducible factors have distinct and stage-specific roles during reprogramming of human cells to pluripotency. Cell Stem Cell. 14: 592-605. PMID 24656769 DOI: 10.1016/j.stem.2014.02.012  0.92
2014 Ware CB, Nelson AM, Mecham B, Hesson J, Zhou W, Jonlin EC, Jimenez-Caliani AJ, Deng X, Cavanaugh C, Cook S, Tesar PJ, Okada J, Margaretha L, Sperber H, Choi M, ... ... Ruohola-Baker H, et al. Derivation of naive human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 4484-9. PMID 24623855 DOI: 10.1073/pnas.1319738111  0.92
2014 Guan X, Mack DL, Moreno CM, Strande JL, Mathieu J, Shi Y, Markert CD, Wang Z, Liu G, Lawlor MW, Moorefield EC, Jones TN, Fugate JA, Furth ME, Murry CE, ... Ruohola-Baker H, et al. Dystrophin-deficient cardiomyocytes derived from human urine: new biologic reagents for drug discovery. Stem Cell Research. 12: 467-80. PMID 24434629 DOI: 10.1016/j.scr.2013.12.004  0.92
2014 Nguyen-Tran DH, Hait NC, Sperber H, Qi J, Fischer K, Ieronimakis N, Pantoja M, Hays A, Allegood J, Reyes M, Spiegel S, Ruohola-Baker H. Molecular mechanism of sphingosine-1-phosphate action in Duchenne muscular dystrophy. Disease Models & Mechanisms. 7: 41-54. PMID 24077965 DOI: 10.1242/dmm.013631  0.92
2013 Ieronimakis N, Pantoja M, Hays AL, Dosey TL, Qi J, Fischer KA, Hoofnagle AN, Sadilek M, Chamberlain JS, Ruohola-Baker H, Reyes M. Increased sphingosine-1-phosphate improves muscle regeneration in acutely injured mdx mice. Skeletal Muscle. 3: 20. PMID 23915702 DOI: 10.1186/2044-5040-3-20  0.92
2013 Mathieu J, Zhang Z, Nelson A, Lamba DA, Reh TA, Ware C, Ruohola-Baker H. Hypoxia induces re-entry of committed cells into pluripotency. Stem Cells (Dayton, Ohio). 31: 1737-48. PMID 23765801 DOI: 10.1002/stem.1446  0.92
2013 Mathieu J, Ruohola-Baker H. Regulation of stem cell populations by microRNAs. Advances in Experimental Medicine and Biology. 786: 329-51. PMID 23696365 DOI: 10.1007/978-94-007-6621-1_18  0.92
2013 Kuppusamy KT, Sperber H, Ruohola-Baker H. MicroRNA regulation and role in stem cell maintenance, cardiac differentiation and hypertrophy. Current Molecular Medicine. 13: 757-64. PMID 23642057 DOI: 10.2174/1566524011313050007  0.92
2013 Zhou W, Tan Y, Anderson DJ, Crist EM, Ruohola-Baker H, Salipante SJ, Horwitz MS. Use of somatic mutations to quantify random contributions to mouse development. Bmc Genomics. 14: 39. PMID 23327737 DOI: 10.1186/1471-2164-14-39  0.92
2013 Pantoja M, Fischer KA, Ieronimakis N, Reyes M, Ruohola-Baker H. Genetic elevation of sphingosine 1-phosphate suppresses dystrophic muscle phenotypes in Drosophila. Development (Cambridge, England). 140: 136-46. PMID 23154413 DOI: 10.1242/dev.087791  0.92
2012 Zhou W, Choi M, Margineantu D, Margaretha L, Hesson J, Cavanaugh C, Blau CA, Horwitz MS, Hockenbery D, Ware C, Ruohola-Baker H. HIF1α induced switch from bivalent to exclusively glycolytic metabolism during ESC-to-EpiSC/hESC transition. The Embo Journal. 31: 2103-16. PMID 22446391 DOI: 10.1038/emboj.2012.71  0.92
2012 Xing Y, Kurtz I, Thuparani M, Legard J, Ruohola-Baker H. Loss-of-Function Screen Reveals Novel Regulators Required for Drosophila Germline Stem Cell Self-Renewal. G3 (Bethesda, Md.). 2: 343-51. PMID 22413088 DOI: 10.1534/g3.111.001651  0.92
2011 Zhou W, Dosey TL, Biechele T, Moon RT, Horwitz MS, Ruohola-Baker H. Assessment of hypoxia inducible factor levels in cancer cell lines upon hypoxic induction using a novel reporter construct. Plos One. 6: e27460. PMID 22132102 DOI: 10.1371/journal.pone.0027460  0.92
2011 Mathieu J, Zhang Z, Zhou W, Wang AJ, Heddleston JM, Pinna CM, Hubaud A, Stadler B, Choi M, Bar M, Tewari M, Liu A, Vessella R, Rostomily R, Born D, ... ... Ruohola-Baker H, et al. HIF induces human embryonic stem cell markers in cancer cells. Cancer Research. 71: 4640-52. PMID 21712410 DOI: 10.1158/0008-5472.CAN-10-3320  0.92
2011 Vêncio EF, Pascal LE, Page LS, Denyer G, Wang AJ, Ruohola-Baker H, Zhang S, Wang K, Galas DJ, Liu AY. Embryonal carcinoma cell induction of miRNA and mRNA changes in co-cultured prostate stromal fibromuscular cells. Journal of Cellular Physiology. 226: 1479-88. PMID 20945389 DOI: 10.1002/jcp.22464  0.92
2010 Mosqueira M, Willmann G, Ruohola-Baker H, Khurana TS. Chronic hypoxia impairs muscle function in the Drosophila model of Duchenne's muscular dystrophy (DMD). Plos One. 5: e13450. PMID 20975992 DOI: 10.1371/journal.pone.0013450  0.92
2010 Chan K, Ruohola-Baker H. Assessing in vivo microRNA function in the germline stem cells of the Drosophila ovary. Methods in Molecular Biology (Clifton, N.J.). 650: 201-12. PMID 20686953 DOI: 10.1007/978-1-60761-769-3_15  0.92
2010 Zhan Y, Melian NY, Pantoja M, Haines N, Ruohola-Baker H, Bourque CW, Rao Y, Carbonetto S. Dystroglycan and mitochondrial ribosomal protein L34 regulate differentiation in the Drosophila eye. Plos One. 5: e10488. PMID 20463973 DOI: 10.1371/journal.pone.0010488  0.92
2010 Stadler B, Ivanovska I, Mehta K, Song S, Nelson A, Tan Y, Mathieu J, Darby C, Blau CA, Ware C, Peters G, Miller DG, Shen L, Cleary MA, Ruohola-Baker H. Characterization of microRNAs involved in embryonic stem cell states. Stem Cells and Development. 19: 935-50. PMID 20128659 DOI: 10.1089/scd.2009.0426  0.92
2009 Qi J, Yu JY, Shcherbata HR, Mathieu J, Wang AJ, Seal S, Zhou W, Stadler BM, Bourgin D, Wang L, Nelson A, Ware C, Raymond C, Lim LP, Magnus J, ... ... Ruohola-Baker H, et al. microRNAs regulate human embryonic stem cell division. Cell Cycle (Georgetown, Tex.). 8: 3729-41. PMID 19823043 DOI: 10.4161/cc.8.22.10033  0.92
2009 Reynolds SH, Ruohola-Baker H. PIWI goes solo in the soma. Developmental Cell. 16: 627-8. PMID 19460338 DOI: 10.1016/j.devcel.2009.05.004  0.92
2009 Yu JY, Reynolds SH, Hatfield SD, Shcherbata HR, Fischer KA, Ward EJ, Long D, Ding Y, Ruohola-Baker H. Dicer-1-dependent Dacapo suppression acts downstream of Insulin receptor in regulating cell division of Drosophila germline stem cells. Development (Cambridge, England). 136: 1497-507. PMID 19336466 DOI: 10.1242/dev.025999  0.92
2009 Yatsenko AS, Kucherenko MM, Pantoja M, Fischer KA, Madeoy J, Deng WM, Schneider M, Baumgartner S, Akey J, Shcherbata HR, Ruohola-Baker H. The conserved WW-domain binding sites in Dystroglycan C-terminus are essential but partially redundant for Dystroglycan function. Bmc Developmental Biology. 9: 18. PMID 19250553 DOI: 10.1186/1471-213X-9-18  0.92
2008 Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, et al. MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries. Stem Cells (Dayton, Ohio). 26: 2496-505. PMID 18583537 DOI: 10.1634/stemcells.2008-0356  0.92
2008 Kucherenko MM, Pantoja M, Yatsenko AS, Shcherbata HR, Fischer KA, Maksymiv DV, Chernyk YI, Ruohola-Baker H. Genetic modifier screens reveal new components that interact with the Drosophila dystroglycan-dystrophin complex. Plos One. 3: e2418. PMID 18545683 DOI: 10.1371/journal.pone.0002418  0.92
2008 Stadler BM, Ruohola-Baker H. Small RNAs: keeping stem cells in line. Cell. 132: 563-6. PMID 18295575 DOI: 10.1016/j.cell.2008.02.005  0.92
2008 Hatfield S, Ruohola-Baker H. microRNA and stem cell function. Cell and Tissue Research. 331: 57-66. PMID 17987317 DOI: 10.1007/s00441-007-0530-3  0.92
2007 Shcherbata HR, Ward EJ, Fischer KA, Yu JY, Reynolds SH, Chen CH, Xu P, Hay BA, Ruohola-Baker H. Stage-specific differences in the requirements for germline stem cell maintenance in the Drosophila ovary. Cell Stem Cell. 1: 698-709. PMID 18213359 DOI: 10.1016/j.stem.2007.11.007  0.92
2007 Yatsenko AS, Gray EE, Shcherbata HR, Patterson LB, Sood VD, Kucherenko MM, Baker D, Ruohola-Baker H. A putative Src homology 3 domain binding motif but not the C-terminal dystrophin WW domain binding motif is required for dystroglycan function in cellular polarity in Drosophila. The Journal of Biological Chemistry. 282: 15159-69. PMID 17355978 DOI: 10.1074/jbc.M608800200  0.92
2007 Shcherbata HR, Yatsenko AS, Patterson L, Sood VD, Nudel U, Yaffe D, Baker D, Ruohola-Baker H. Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy. The Embo Journal. 26: 481-93. PMID 17215867 DOI: 10.1038/sj.emboj.7601503  0.92
2006 Ward EJ, Shcherbata HR, Reynolds SH, Fischer KA, Hatfield SD, Ruohola-Baker H. Stem cells signal to the niche through the Notch pathway in the Drosophila ovary. Current Biology : Cb. 16: 2352-8. PMID 17070683 DOI: 10.1016/j.cub.2006.10.022  0.92
2006 Ward EJ, Zhou X, Riddiford LM, Berg CA, Ruohola-Baker H. Border of Notch activity establishes a boundary between the two dorsal appendage tube cell types. Developmental Biology. 297: 461-70. PMID 16828735 DOI: 10.1016/j.ydbio.2006.05.021  0.92
2006 Jordan KC, Schaeffer V, Fischer KA, Gray EE, Ruohola-Baker H. Notch signaling through tramtrack bypasses the mitosis promoting activity of the JNK pathway in the mitotic-to-endocycle transition of Drosophila follicle cells. Bmc Developmental Biology. 6: 16. PMID 16542414 DOI: 10.1186/1471-213X-6-16  0.92
2006 Shcherbata HR, Hatfield S, Ward EJ, Reynolds S, Fischer KA, Ruohola-Baker H. The MicroRNA pathway plays a regulatory role in stem cell division. Cell Cycle (Georgetown, Tex.). 5: 172-5. PMID 16357538  0.92
2005 Hatfield SD, Shcherbata HR, Fischer KA, Nakahara K, Carthew RW, Ruohola-Baker H. Stem cell division is regulated by the microRNA pathway. Nature. 435: 974-8. PMID 15944714 DOI: 10.1038/nature03816  0.92
2005 Althauser C, Jordan KC, Deng WM, Ruohola-Baker H. Fringe-dependent notch activation and tramtrack function are required for specification of the polar cells in Drosophila oogenesis. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 232: 1013-20. PMID 15765546 DOI: 10.1002/dvdy.20361  0.92
2005 Jordan KC, Hatfield SD, Tworoger M, Ward EJ, Fischer KA, Bowers S, Ruohola-Baker H. Genome wide analysis of transcript levels after perturbation of the EGFR pathway in the Drosophila ovary. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 232: 709-24. PMID 15704171 DOI: 10.1002/dvdy.20318  0.92
2004 Shcherbata HR, Althauser C, Findley SD, Ruohola-Baker H. The mitotic-to-endocycle switch in Drosophila follicle cells is executed by Notch-dependent regulation of G1/S, G2/M and M/G1 cell-cycle transitions. Development (Cambridge, England). 131: 3169-81. PMID 15175253 DOI: 10.1242/dev.01172  0.92
2004 Schaeffer V, Althauser C, Shcherbata HR, Deng WM, Ruohola-Baker H. Notch-dependent Fizzy-related/Hec1/Cdh1 expression is required for the mitotic-to-endocycle transition in Drosophila follicle cells. Current Biology : Cb. 14: 630-6. PMID 15062106 DOI: 10.1016/j.cub.2004.03.040  0.92
2003 Findley SD, Tamanaha M, Clegg NJ, Ruohola-Baker H. Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage. Development (Cambridge, England). 130: 859-71. PMID 12538514 DOI: 10.1242/dev.00310  0.92
2003 Deng WM, Schneider M, Frock R, Castillejo-Lopez C, Gaman EA, Baumgartner S, Ruohola-Baker H. Dystroglycan is required for polarizing the epithelial cells and the oocyte in Drosophila. Development (Cambridge, England). 130: 173-84. PMID 12441301 DOI: 10.1242/dev.00199  0.92
2001 Deng WM, Althauser C, Ruohola-Baker H. Notch-Delta signaling induces a transition from mitotic cell cycle to endocycle in Drosophila follicle cells. Development (Cambridge, England). 128: 4737-46. PMID 11731454  0.92
2001 Clegg NJ, Findley SD, Mahowald AP, Ruohola-Baker H. Maelstrom is required to position the MTOC in stage 2-6 Drosophila oocytes. Development Genes and Evolution. 211: 44-8. PMID 11277405 DOI: 10.1007/s004270000114  0.92
2000 Deng WM, Ruohola-Baker H. Laminin A is required for follicle cell-oocyte signaling that leads to establishment of the anterior-posterior axis in Drosophila. Current Biology : Cb. 10: 683-6. PMID 10837250 DOI: 10.1016/S0960-9822(00)00514-5  0.92
2000 Jordan KC, Clegg NJ, Blasi JA, Morimoto AM, Sen J, Stein D, McNeill H, Deng WM, Tworoger M, Ruohola-Baker H. The homeobox gene mirror links EGF signalling to embryonic dorso-ventral axis formation through notch activation. Nature Genetics. 24: 429-33. PMID 10742112 DOI: 10.1038/74294  0.92
1999 Keller Larkin M, Deng WM, Holder K, Tworoger M, Clegg N, Ruohola-Baker H. Role of Notch pathway in terminal follicle cell differentiation during Drosophila oogenesis. Development Genes and Evolution. 209: 301-11. PMID 11252183 DOI: 10.1007/s004270050256  0.92
1999 Bryant Z, Subrahmanyan L, Tworoger M, LaTray L, Liu CR, Li MJ, van den Engh G, Ruohola-Baker H. Characterization of differentially expressed genes in purified Drosophila follicle cells: toward a general strategy for cell type-specific developmental analysis. Proceedings of the National Academy of Sciences of the United States of America. 96: 5559-64. PMID 10318923 DOI: 10.1073/pnas.96.10.5559  0.92
1999 Tworoger M, Larkin MK, Bryant Z, Ruohola-Baker H. Mosaic analysis in the drosophila ovary reveals a common hedgehog-inducible precursor stage for stalk and polar cells. Genetics. 151: 739-48. PMID 9927465  0.92
1997 Clegg NJ, Frost DM, Larkin MK, Subrahmanyan L, Bryant Z, Ruohola-Baker H. maelstrom is required for an early step in the establishment of Drosophila oocyte polarity: posterior localization of grk mRNA. Development (Cambridge, England). 124: 4661-71. PMID 9409682  0.92
1996 Morimoto AM, Jordan KC, Tietze K, Britton JS, O'Neill EM, Ruohola-Baker H. Pointed, an ETS domain transcription factor, negatively regulates the EGF receptor pathway in Drosophila oogenesis. Development (Cambridge, England). 122: 3745-54. PMID 9012496  0.92
1996 Larkin MK, Holder K, Yost C, Giniger E, Ruohola-Baker H. Expression of constitutively active Notch arrests follicle cells at a precursor stage during Drosophila oogenesis and disrupts the anterior-posterior axis of the oocyte. Development (Cambridge, England). 122: 3639-50. PMID 8951079  0.92
1994 Ruohola-Baker H, Jan LY, Jan YN. The role of gene cassettes in axis formation during Drosophila oogenesis. Trends in Genetics : Tig. 10: 89-94. PMID 8178370 DOI: 10.1016/0168-9525(94)90231-3  0.92
1994 Clark I, Giniger E, Ruohola-Baker H, Jan LY, Jan YN. Transient posterior localization of a kinesin fusion protein reflects anteroposterior polarity of the Drosophila oocyte. Current Biology : Cb. 4: 289-300. PMID 7922338 DOI: 10.1016/S0960-9822(00)00068-3  0.92
1993 Ruohola-Baker H, Grell E, Chou TB, Baker D, Jan LY, Jan YN. Spatially localized rhomboid is required for establishment of the dorsal-ventral axis in Drosophila oogenesis. Cell. 73: 953-65. PMID 8500182 DOI: 10.1016/0092-8674(93)90273-S  0.92
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