Andy Clark - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 

220 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Clark AG, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.747
2020 Ågren JA, Munasinghe M, Clark AG. Mitochondrial-Y chromosome epistasis in . Proceedings. Biological Sciences. 287: 20200469. PMID 33081607 DOI: 10.1098/rspb.2020.0469  0.783
2020 Cosgrove EJ, Sadeghi R, Schlamp F, Holl HM, Moradi-Shahrbabak M, Miraei-Ashtiani SR, Abdalla S, Shykind B, Troedsson M, Stefaniuk-Szmukier M, Prabhu A, Bucca S, Bugno-Poniewierska M, Wallner B, Malek J, ... ... Clark AG, et al. Genome Diversity and the Origin of the Arabian Horse. Scientific Reports. 10: 9702. PMID 32546689 DOI: 10.1038/S41598-020-66232-1  0.363
2020 Hafezi Y, Sruba SR, Tarrash SR, Wolfner MF, Clark AG. Dissecting Fertility Functions of a Y Chromosome Genes with CRISPR. Genetics. PMID 32098759 DOI: 10.1534/Genetics.120.302672  0.348
2020 Luo S, Zhang H, Duan Y, Yao X, Clark AG, Lu J. The evolutionary arms race between transposable elements and piRNAs in Drosophila melanogaster. Bmc Evolutionary Biology. 20: 14. PMID 31992188 DOI: 10.1186/S12862-020-1580-3  0.324
2020 Flynn JM, Long M, Wing RA, Clark AG. Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis. Molecular Biology and Evolution. PMID 31960929 DOI: 10.1093/Molbev/Msaa010  0.517
2019 Lower SE, Dion-Côté AM, Clark AG, Barbash DA. Special Issue: Repetitive DNA Sequences. Genes. 10. PMID 31698818 DOI: 10.3390/Genes10110896  0.807
2019 Rosenfeld CS, Hekman JP, Johnson JL, Lyu Z, Ortega MT, Joshi T, Mao J, Vladimirova AV, Gulevich RG, Kharlamova AV, Acland GM, Hecht EE, Wang X, Clark AG, Trut LN, et al. Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Genes, Brain, and Behavior. PMID 31605445 DOI: 10.1111/Gbb.12614  0.423
2019 Ågren JA, Munasinghe M, Clark AG. Sexual conflict through mother's curse and father's curse. Theoretical Population Biology. PMID 31054851 DOI: 10.1016/J.Tpb.2018.12.007  0.758
2019 Champer J, Wen Z, Luthra A, Reeves R, Chung J, Liu C, Lee YL, Liu J, Yang E, Messer PW, Clark AG. CRISPR Gene Drive Efficiency and Resistance Rate Is Highly Heritable with No Common Genetic Loci of Large Effect. Genetics. PMID 30918006 DOI: 10.1534/Genetics.119.302037  0.312
2018 Ågren JA, Clark AG. Selfish genetic elements. Plos Genetics. 14: e1007700. PMID 30439939 DOI: 10.1371/Journal.Pgen.1007700  0.787
2018 Torres MF, Mathew LS, Ahmed I, Al-Azwani IK, Krueger R, Rivera-Nuñez D, Mohamoud YA, Clark AG, Suhre K, Malek JA. Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix. Nature Communications. 9: 3969. PMID 30266991 DOI: 10.1038/S41467-018-06375-Y  0.331
2018 Wang X, Pipes L, Trut LN, Herbeck Y, Vladimirova AV, Gulevich RG, Kharlamova AV, Johnson JL, Acland GM, Kukekova AV, Clark AG. Genomic responses to selection for tame/aggressive behaviors in the silver fox (). Proceedings of the National Academy of Sciences of the United States of America. PMID 30228118 DOI: 10.1073/Pnas.1800889115  0.471
2018 Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, ... ... Clark AG, et al. Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30104754 DOI: 10.1038/S41559-018-0664-6  0.397
2018 Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, ... ... Clark AG, et al. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30082739 DOI: 10.1038/S41559-018-0611-6  0.513
2018 Flynn JM, Lower SE, Barbash DA, Clark AG. Rates and patterns of mutation in tandem repetitive DNA in six independent lineages of Chlamydomonas reinhardtii. Genome Biology and Evolution. PMID 29931069 DOI: 10.1093/Gbe/Evy123  0.806
2018 Lower SS, McGurk MP, Clark AG, Barbash DA. Satellite DNA evolution: old ideas, new approaches. Current Opinion in Genetics & Development. 49: 70-78. PMID 29579574 DOI: 10.1016/J.Gde.2018.03.003  0.672
2018 Wei KH, Lower SE, Caldas IV, Sless TJ, Barbash DA, Clark AG. Variable rates of simple satellite gains across the Drosophila phylogeny. Molecular Biology and Evolution. PMID 29361128 DOI: 10.1093/Molbev/Msy005  0.822
2017 Delbare SYN, Chow CY, Wolfner MF, Clark AG. Roles of female and male genotype in post-mating responses in Drosophila melanogaster: Roles of female and male genotype in female Drosophila melanogaster transcriptional, physiological and behavioral responses to mating. The Journal of Heredity. PMID 29036644 DOI: 10.1093/Jhered/Esx081  0.591
2017 Flynn JM, Caldas I, Cristescu ME, Clark AG. Selection Constrains High Rates of Tandem Repetitive DNA Mutation in Daphnia pulex. Genetics. PMID 28811387 DOI: 10.1534/Genetics.117.300146  0.308
2017 Ahmed-Braimah YH, Unckless RL, Clark AG. Evolutionary Dynamics of Male Reproductive Genes in the Drosophila virilis Subgroup. G3 (Bethesda, Md.). PMID 28739599 DOI: 10.1534/G3.117.1136  0.817
2017 Wei KH, Reddy HM, Rathnam C, Lee J, Lin D, Ji S, Mason JM, Clark AG, Barbash DA. A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver in Drosophila. Genetics. PMID 28258181 DOI: 10.1534/Genetics.116.197335  0.689
2017 Giardina TJ, Clark AG, Fiumera AC. Estimating mating rates in wild Drosophila melanogaster females by decay rates of male reproductive proteins in their reproductive tracts. Molecular Ecology Resources. PMID 28213940 DOI: 10.1111/1755-0998.12661  0.701
2017 Bellott DW, Skaletsky H, Cho TJ, Brown L, Locke D, Chen N, Galkina S, Pyntikova T, Koutseva N, Graves T, Kremitzki C, Warren WC, Clark AG, Gaginskaya E, Wilson RK, et al. Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators. Nature Genetics. PMID 28135246 DOI: 10.1038/Ng.3778  0.301
2016 Unckless RL, Clark AG, Messer PW. Evolution of Resistance Against CRISPR/Cas9 Gene Drive. Genetics. PMID 27941126 DOI: 10.1534/Genetics.116.197285  0.781
2016 Early AM, Arguello JR, Cardoso-Moreira M, Gottipati S, Grenier JK, Clark AG. Survey of Global Genetic Diversity Within the Drosophila Immune System. Genetics. PMID 27815361 DOI: 10.1534/Genetics.116.195016  0.312
2016 Wang X, Werren JH, Clark AG. Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. Plos Biology. 14: e1002500. PMID 27380029 DOI: 10.1371/Journal.Pbio.1002500  0.403
2016 Cardoso-Moreira M, Arguello JR, Gottipati S, Harshman LG, Grenier JK, Clark AG. Evidence for the fixation of gene duplications by positive selection in Drosophila. Genome Research. PMID 27197209 DOI: 10.1101/Gr.199323.115  0.363
2015 Chow CY, Kelsey KJ, Wolfner MF, Clark AG. Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila. Human Molecular Genetics. PMID 26662796 DOI: 10.1093/Hmg/Ddv502  0.603
2015 Alexander KA, Wang X, Shibata M, Clark AG, García-García MJ. TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming. Cell Reports. PMID 26527006 DOI: 10.1016/J.Celrep.2015.09.078  0.441
2015 Slavney A, Arbiza L, Clark AG, Keinan A. Strong constraint on human genes escaping X-inactivation is modulated by their expression level and breadth in both sexes. Molecular Biology and Evolution. PMID 26494842 DOI: 10.1093/Molbev/Msv225  0.316
2015 Zhang J, Hobkirk J, Carroll S, Pellicori P, Clark AL, Cleland JG. Exploring quality of life in patients with and without heart failure. International Journal of Cardiology. 202: 676-684. PMID 26453816 DOI: 10.1016/j.ijcard.2015.09.076  0.371
2015 Clark AL, Johnson M, Fairhurst C, Torgerson D, Cockayne S, Rodgers S, Griffin S, Allgar V, Jones L, Nabb S, Harvey I, Squire I, Murphy J, Greenstone M. Does home oxygen therapy (HOT) in addition to standard care reduce disease severity and improve symptoms in people with chronic heart failure? A randomised trial of home oxygen therapy for patients with chronic heart failure. Health Technology Assessment (Winchester, England). 19: 1-120. PMID 26393373 DOI: 10.3310/hta19750  0.401
2015 Carvalho AB, Vicoso B, Russo CA, Swenor B, Clark AG. Birth of a new gene on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 112: 12450-5. PMID 26385968 DOI: 10.1073/Pnas.1516543112  0.623
2015 Unckless RL, Messer PW, Connallon T, Clark AG. Modeling the Manipulation of Natural Populations by the Mutagenic Chain Reaction. Genetics. 201: 425-31. PMID 26232409 DOI: 10.1534/Genetics.115.177592  0.779
2015 Meisel RP, Scott JG, Clark AG. Transcriptome Differences between Alternative Sex Determining Genotypes in the House Fly, Musca domestica. Genome Biology and Evolution. 7: 2051-61. PMID 26142430 DOI: 10.1093/Gbe/Evv128  0.797
2015 Wang X, Werren JH, Clark AG. Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100871 DOI: 10.1073/Pnas.1510338112  0.479
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Corrigendum: Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 7296. PMID 25976209 DOI: 10.1038/Ncomms8296  0.711
2015 Henn BM, Botigué LR, Bustamante CD, Clark AG, Gravel S. Estimating the mutation load in human genomes. Nature Reviews. Genetics. 16: 333-43. PMID 25963372 DOI: 10.1038/Nrg3931  0.479
2015 Ayroles JF, Buchanan SM, O'Leary C, Skutt-Kakaria K, Grenier JK, Clark AG, Hartl DL, de Bivort BL. Behavioral idiosyncrasy reveals genetic control of phenotypic variability. Proceedings of the National Academy of Sciences of the United States of America. 112: 6706-11. PMID 25953335 DOI: 10.1073/Pnas.1503830112  0.472
2015 Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C, Morrison A, Johnson AD, Bis J, Cupples LA, Psaty BM, ... ... Clark AG, et al. Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions. Plos One. 10: e0121644. PMID 25807536 DOI: 10.1371/Journal.Pone.0121644  0.442
2015 Chow CY, Avila FW, Clark AG, Wolfner MF. Induction of excessive endoplasmic reticulum stress in the Drosophila male accessory gland results in infertility. Plos One. 10: e0119386. PMID 25742606 DOI: 10.1371/Journal.Pone.0119386  0.527
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 6312. PMID 25692519 DOI: 10.1038/Ncomms7312  0.751
2015 Chow CY, Wang X, Riccardi D, Wolfner MF, Clark AG. The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse. Plos Genetics. 11: e1004924. PMID 25651210 DOI: 10.1371/Journal.Pgen.1004924  0.607
2015 Unckless RL, Larracuente AM, Clark AG. Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis. Genetics. 199: 831-40. PMID 25571899 DOI: 10.1534/Genetics.114.173948  0.793
2015 Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, ... ... Clark AG, et al. Genomics of ecological adaptation in cactophilic Drosophila. Genome Biology and Evolution. 7: 349-66. PMID 25552534 DOI: 10.1093/Gbe/Evu291  0.358
2015 Reinhart M, Carney T, Clark AG, Fiumera AC. Characterizing male-female interactions using natural genetic variation in Drosophila melanogaster. The Journal of Heredity. 106: 67-79. PMID 25425680 DOI: 10.1093/Jhered/Esu076  0.713
2014 Wei KH, Grenier JK, Barbash DA, Clark AG. Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 111: 18793-8. PMID 25512552 DOI: 10.1073/Pnas.1421951112  0.681
2014 Scott JG, Warren WC, Beukeboom LW, Bopp D, Clark AG, Giers SD, Hediger M, Jones AK, Kasai S, Leichter CA, Li M, Meisel RP, Minx P, Murphy TD, Nelson DR, et al. Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. Genome Biology. 15: 466. PMID 25315136 DOI: 10.1186/S13059-014-0466-3  0.82
2014 Singh ND, Koerich LB, Carvalho AB, Clark AG. Positive and purifying selection on the Drosophila Y chromosome. Molecular Biology and Evolution. 31: 2612-23. PMID 24974375 DOI: 10.1093/Molbev/Msu203  0.641
2014 Unckless RL, Clark AG. Sex-ratio meiotic drive and interspecific competition. Journal of Evolutionary Biology. 27: 1513-21. PMID 24835887 DOI: 10.1111/Jeb.12411  0.783
2014 Wei KH, Clark AG, Barbash DA. Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans. Molecular Biology and Evolution. 31: 1767-78. PMID 24723419 DOI: 10.1093/Molbev/Msu127  0.691
2014 Wang X, Clark AG. Using next-generation RNA sequencing to identify imprinted genes. Heredity. 113: 156-66. PMID 24619182 DOI: 10.1038/Hdy.2014.18  0.468
2014 Douglas KC, Wang X, Jasti M, Wolff A, VandeBerg JL, Clark AG, Samollow PB. Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. Bmc Genomics. 15: 89. PMID 24484454 DOI: 10.1186/1471-2164-15-89  0.466
2014 Larracuente AM, Clark AG. Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura. Molecular Biology and Evolution. 31: 846-56. PMID 24390701 DOI: 10.1093/Molbev/Msu002  0.705
2014 Wang X, Douglas KC, Vandeberg JL, Clark AG, Samollow PB. Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica. Genome Research. 24: 70-83. PMID 24065774 DOI: 10.1101/Gr.161919.113  0.448
2013 Sackton TB, Werren JH, Clark AG. Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes. Plos One. 8: e83984. PMID 24386321 DOI: 10.1371/Journal.Pone.0083984  0.692
2013 Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ, Green ED, Clark AG, Seixas S. Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity. Genome Biology and Evolution. 5: 2512-23. PMID 24356879 DOI: 10.1093/Gbe/Evu029  0.571
2013 Corbett-Detig RB, Zhou J, Clark AG, Hartl DL, Ayroles JF. Genetic incompatibilities are widespread within species. Nature. 504: 135-7. PMID 24196712 DOI: 10.1038/Nature12678  0.56
2013 Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH. Function and evolution of DNA methylation in Nasonia vitripennis. Plos Genetics. 9: e1003872. PMID 24130511 DOI: 10.1371/Journal.Pgen.1003872  0.413
2013 Carvalho AB, Clark AG. Efficient identification of Y chromosome sequences in the human and Drosophila genomes. Genome Research. 23: 1894-907. PMID 23921660 DOI: 10.1101/Gr.156034.113  0.663
2013 Wang X, Miller DC, Harman R, Antczak DF, Clark AG. Paternally expressed genes predominate in the placenta. Proceedings of the National Academy of Sciences of the United States of America. 110: 10705-10. PMID 23754418 DOI: 10.1073/Pnas.1308998110  0.493
2013 Chow CY, Wolfner MF, Clark AG. Using natural variation in Drosophila to discover previously unknown endoplasmic reticulum stress genes. Proceedings of the National Academy of Sciences of the United States of America. 110: 9013-8. PMID 23667151 DOI: 10.1073/Pnas.1307125110  0.559
2013 Ferreira Z, Seixas S, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Swanson WJ, Clark AG, Green ED, Hurle B. Reproduction and immunity-driven natural selection in the human WFDC locus. Molecular Biology and Evolution. 30: 938-50. PMID 23292442 DOI: 10.1093/Molbev/Mss329  0.323
2013 Zhang R, Clark AG, Fiumera AC. Natural genetic variation in male reproductive genes contributes to nontransitivity of sperm competitive ability in Drosophila melanogaster. Molecular Ecology. 22: 1400-15. PMID 23171073 DOI: 10.1111/Mec.12113  0.738
2013 Chow CY, Wolfner MF, Clark AG. Large neurological component to genetic differences underlying biased sperm use in Drosophila. Genetics. 193: 177-85. PMID 23105014 DOI: 10.1534/Genetics.112.146357  0.625
2013 Singh ND, Jensen JD, Clark AG, Aquadro CF. Inferences of demography and selection in an African population of Drosophila melanogaster. Genetics. 193: 215-28. PMID 23105013 DOI: 10.1534/Genetics.112.145318  0.57
2013 Larracuente AM, Clark AG. Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster. Genetics. 193: 201-14. PMID 23086221 DOI: 10.1534/Genetics.112.146167  0.723
2012 Cardoso-Moreira M, Arguello JR, Clark AG. Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing. Genome Biology. 13: R119. PMID 23259534 DOI: 10.1186/Gb-2012-13-12-R119  0.339
2012 Meisel RP, Malone JH, Clark AG. Faster-X evolution of gene expression in Drosophila. Plos Genetics. 8: e1003013. PMID 23071459 DOI: 10.1371/Journal.Pgen.1003013  0.809
2012 Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, ... ... Clark AG, et al. Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. American Journal of Human Genetics. 91: 660-71. PMID 23040495 DOI: 10.1016/J.Ajhg.2012.08.025  0.514
2012 Wang X, Miller DC, Clark AG, Antczak DF. Random X inactivation in the mule and horse placenta. Genome Research. 22: 1855-63. PMID 22645258 DOI: 10.1101/Gr.138487.112  0.423
2012 Chen N, Bellott DW, Page DC, Clark AG. Identification of avian W-linked contigs by short-read sequencing. Bmc Genomics. 13: 183. PMID 22583744 DOI: 10.1186/1471-2164-13-183  0.325
2012 Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC. Genome sequencing reveals complex speciation in the Drosophila simulans clade. Genome Research. 22: 1499-511. PMID 22534282 DOI: 10.1101/Gr.130922.111  0.763
2012 Meisel RP, Malone JH, Clark AG. Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Research. 22: 1255-65. PMID 22499666 DOI: 10.1101/Gr.132100.111  0.815
2012 Lu J, Clark AG. Impact of microRNA regulation on variation in human gene expression. Genome Research. 22: 1243-54. PMID 22456605 DOI: 10.1101/Gr.132514.111  0.332
2011 Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. Plos Genetics. 7: e1002340. PMID 22072977 DOI: 10.1371/Journal.Pgen.1002340  0.74
2011 Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, Chen Y, Challis D, Clarke L, Ball EV, Cibulskis K, ... ... Clark AG, et al. The functional spectrum of low-frequency coding variation. Genome Biology. 12: R84. PMID 21917140 DOI: 10.1186/Gb-2011-12-9-R84  0.473
2011 Giardina TJ, Beavis A, Clark AG, Fiumera AC. Female influence on pre- and post-copulatory sexual selection and its genetic basis in Drosophila melanogaster. Molecular Ecology. 20: 4098-108. PMID 21902747 DOI: 10.1111/J.1365-294X.2011.05253.X  0.734
2011 Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A. Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nature Genetics. 43: 741-3. PMID 21775991 DOI: 10.1038/Ng.877  0.4
2011 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America. 108: 11983-8. PMID 21730125 DOI: 10.1073/Pnas.1019276108  0.494
2011 Greenspan L, Clark AG. Associations between Variation in X Chromosome Male Reproductive Genes and Sperm Competitive Ability in Drosophila melanogaster. International Journal of Evolutionary Biology. 2011: 214280-214280. PMID 21716718 DOI: 10.4061/2011/214280  0.33
2011 Oxberry SG, Torgerson DJ, Bland JM, Clark AL, Cleland JG, Johnson MJ. Short-term opioids for breathlessness in stable chronic heart failure: a randomized controlled trial. European Journal of Heart Failure. 13: 1006-12. PMID 21712288 DOI: 10.1093/eurjhf/hfr068  0.404
2011 Wang X, Soloway PD, Clark AG. A survey for novel imprinted genes in the mouse placenta by mRNA-seq Genetics. 189: 109-122. PMID 21705755 DOI: 10.1534/Genetics.111.130088  0.477
2011 Im KM, Kirchhoff T, Wang X, Green T, Chow CY, Vijai J, Korn J, Gaudet MM, Fredericksen Z, Shane Pankratz V, Guiducci C, Crenshaw A, McGuffog L, Kartsonaki C, Morrison J, ... ... Clark AG, et al. Haplotype structure in Ashkenazi Jewish BRCA1 and BRCA2 mutation carriers. Human Genetics. 130: 685-99. PMID 21597964 DOI: 10.1007/S00439-011-1003-Z  0.591
2011 Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proceedings of the National Academy of Sciences of the United States of America. 108: 7472-7. PMID 21482769 DOI: 10.1073/Pnas.1103457108  0.367
2011 Lohmueller KE, Bustamante CD, Clark AG. Detecting directional selection in the presence of recent admixture in African-Americans. Genetics. 187: 823-35. PMID 21196524 DOI: 10.1534/Genetics.110.122739  0.665
2010 Andrés AM, Dennis MY, Kretzschmar WW, Cannons JL, Lee-Lin SQ, Hurle B, Schwartzberg PL, Williamson SH, Bustamante CD, Nielsen R, Clark AG, Green ED. Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation. Plos Genetics. 6: e1001157. PMID 20976248 DOI: 10.1371/Journal.Pgen.1001157  0.45
2010 Chow CY, Wolfner MF, Clark AG. The genetic basis for male x female interactions underlying variation in reproductive phenotypes of Drosophila. Genetics. 186: 1355-65. PMID 20876561 DOI: 10.1534/Genetics.110.123174  0.596
2010 Connallon T, Clark AG. Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression Evolution. 64: 3417-3442. PMID 20874735 DOI: 10.1111/J.1558-5646.2010.01136.X  0.392
2010 Clark AG, Wang X, Matise T. Contrasting methods of quantifying fine structure of human recombination Annual Review of Genomics and Human Genetics. 11: 45-64. PMID 20690817 DOI: 10.1146/Annurev-Genom-082908-150031  0.381
2010 Wang X, Soloway PD, Clark AG. Paternally biased X inactivation in mouse neonatal brain Genome Biology. R79. PMID 20663224 DOI: 10.1186/Gb-2010-11-7-R79  0.437
2010 Connallon T, Clark AG. Gene duplication, gene conversion and the evolution of the Y chromosome Genetics. 186: 277-286. PMID 20551442 DOI: 10.1534/Genetics.110.116756  0.339
2010 Hill-Burns EM, Clark AG. Functional regulatory divergence of the innate immune system in interspecific Drosophila hybrids. Molecular Biology and Evolution. 27: 2596-605. PMID 20551040 DOI: 10.1093/Molbev/Msq146  0.773
2010 Royal CD, Novembre J, Fullerton SM, Goldstein DB, Long JC, Bamshad MJ, Clark AG. Inferring genetic ancestry: opportunities, challenges, and implications. American Journal of Human Genetics. 86: 661-73. PMID 20466090 DOI: 10.1016/J.Ajhg.2010.03.011  0.434
2010 Lohmueller KE, Bustamante CD, Clark AG. The effect of recent admixture on inference of ancient human population history. Genetics. 185: 611-22. PMID 20382834 DOI: 10.1534/Genetics.109.113761  0.672
2010 Larracuente AM, Noor MA, Clark AG. Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura. Molecular Biology and Evolution. 27: 1612-20. PMID 20147437 DOI: 10.1093/Molbev/Msq045  0.72
2010 Sackton TB, Lazzaro BP, Clark AG. Genotype and gene expression associations with immune function in Drosophila. Plos Genetics. 6: e1000797. PMID 20066029 DOI: 10.1371/Journal.Pgen.1000797  0.806
2010 Lu J, Clark AG. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Research. 20: 212-27. PMID 19948818 DOI: 10.1101/Gr.095406.109  0.411
2010 De La Vega FM, Bryc K, Degehnardt JD, Musharoff S, Kidd JM, Seth V, Stanley S, Brisbin A, Keinan A, Clark A, Bustamante CD. Genome sequencing and analysis of admixed genomes of African and Mexican ancestry: implications for personal ancestry reconstruction and multi-ethnic medical genomics Genome Biology. 11. DOI: 10.1186/Gb-2010-11-S1-O4  0.498
2010 Antczak DF, Wang X, Miller DC, Clark AG. Genomic Imprinting in Invasive Trophoblast in Mammalian Interspecies Hybrids. Biology of Reproduction. 83: 102-102. DOI: 10.1093/Biolreprod/83.S1.102  0.433
2009 Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, Marth GT, Hartl DL, Clark AG. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biology and Evolution. 1: 449-65. PMID 20333214 DOI: 10.1093/Gbe/Evp048  0.806
2009 Hill-Burns EM, Clark AG. X-linked variation in immune response in Drosophila melanogaster. Genetics. 183: 1477-91. PMID 19822734 DOI: 10.1534/Genetics.108.093971  0.79
2009 Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, ... ... Clark AG, et al. Finding the missing heritability of complex diseases. Nature. 461: 747-53. PMID 19812666 DOI: 10.1038/Nature08494  0.474
2009 Andrés AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, Nielsen R. Targets of balancing selection in the human genome. Molecular Biology and Evolution. 26: 2755-64. PMID 19713326 DOI: 10.1093/Molbev/Msp190  0.683
2009 Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, Clark AG. Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence. Plos Genetics. 5: e1000592. PMID 19662163 DOI: 10.1371/Journal.Pgen.1000592  0.666
2009 Sackton TB, Clark AG. Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. Bmc Genomics. 10: 259. PMID 19500410 DOI: 10.1186/1471-2164-10-259  0.711
2009 Singh ND, Arndt PF, Clark AG, Aquadro CF. Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila. Molecular Biology and Evolution. 26: 1591-605. PMID 19351792 DOI: 10.1093/Molbev/Msp071  0.302
2009 Scott JG, Liu N, Kristensen M, Clark AG. A Case for Sequencing the Genome of Musca domestica (Diptera: Muscidae) Journal of Medical Entomology. 46: 175-182. PMID 19351068 DOI: 10.1603/033.046.0202  0.348
2009 Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, Clark AG. Darwinian and demographic forces affecting human protein coding genes. Genome Research. 19: 838-49. PMID 19279335 DOI: 10.1101/Gr.088336.108  0.671
2009 Lohmueller KE, Bustamante CD, Clark AG. Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data. Genetics. 182: 217-31. PMID 19255370 DOI: 10.1534/Genetics.108.099275  0.673
2009 Singh ND, Larracuente AM, Sackton TB, Clark AG. Comparative genomics on the drosophila phylogenetic tree Annual Review of Ecology, Evolution, and Systematics. 40: 459-480. DOI: 10.1146/Annurev.Ecolsys.110308.120214  0.826
2008 Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG. Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain Plos One. 3. PMID 19052635 DOI: 10.1371/Journal.Pone.0003839  0.462
2008 Koerich LB, Wang X, Clark AG, Carvalho AB. Low conservation of gene content in the Drosophila Y chromosome. Nature. 456: 949-51. PMID 19011613 DOI: 10.1038/Nature07463  0.632
2008 Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR, White TJ, Nielsen R, Clark AG, Bustamante CD. Assessing the evolutionary impact of amino acid mutations in the human genome. Plos Genetics. 4: e1000083. PMID 18516229 DOI: 10.1371/Journal.Pgen.1000083  0.716
2008 McKean KA, Yourth CP, Lazzaro BP, Clark AG. The evolutionary costs of immunological maintenance and deployment. Bmc Evolutionary Biology. 8: 76. PMID 18315877 DOI: 10.1186/1471-2148-8-76  0.7
2008 Lohmueller KE, Indap AR, Schmidt S, Boyko AR, Hernandez RD, Hubisz MJ, Sninsky JJ, White TJ, Sunyaev SR, Nielsen R, Clark AG, Bustamante CD. Proportionally more deleterious genetic variation in European than in African populations. Nature. 451: 994-7. PMID 18288194 DOI: 10.1038/Nature06611  0.687
2008 Olshen AB, Gold B, Lohmueller KE, Struewing JP, Satagopan J, Stefanov SA, Eskin E, Kirchhoff T, Lautenberger JA, Klein RJ, Friedman E, Norton L, Ellis NA, Viale A, Lee CS, ... ... Clark AG, et al. Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping. Bmc Genetics. 9: 14. PMID 18251999 DOI: 10.1186/1471-2156-9-14  0.63
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/J.Tig.2007.12.001  0.81
2008 Singh ND, Larracuente AM, Clark AG. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution. 25: 454-67. PMID 18083702 DOI: 10.1093/Molbev/Msm275  0.734
2008 Pollard KS, Serre D, Wang X, Tao H, Grundberg E, Hudson TJ, Clark AG, Frazer K. A genome-wide approach to identifying novel-imprinted genes Human Genetics. 122: 625-634. PMID 17955261 DOI: 10.1007/S00439-007-0440-1  0.509
2008 Lynch ME, Campbell F, Clark AJ, Dunbar MJ, Goldstein D, Peng P, Stinson J, Tupper H. A systematic review of the effect of waiting for treatment for chronic pain. Pain. 136: 97-116. PMID 17707589 DOI: 10.1016/j.pain.2007.06.018  0.342
2007 Lynch ME, Campbell FA, Clark AJ, Dunbar MJ, Goldstein D, Peng P, Stinson J, Tupper H. Waiting for treatment for chronic pain - a survey of existing benchmarks: toward establishing evidence-based benchmarks for medically acceptable waiting times. Pain Research & Management : the Journal of the Canadian Pain Society = Journal De La SociéTé Canadienne Pour Le Traitement De La Douleur. 12: 245-8. PMID 18080042 DOI: 10.1155/2007/891951  0.343
2007 Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Hodges E, ... ... Clark AG, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 450: 219-32. PMID 17994088 DOI: 10.1038/Nature06340  0.326
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.769
2007 Sackton TB, Lazzaro BP, Schlenke TA, Evans JD, Hultmark D, Clark AG. Dynamic evolution of the innate immune system in Drosophila. Nature Genetics. 39: 1461-8. PMID 17987029 DOI: 10.1038/Ng.2007.60  0.811
2007 Schlenke TA, Morales J, Govind S, Clark AG. Contrasting infection strategies in generalist and specialist wasp parasitoids of Drosophila melanogaster. Plos Pathogens. 3: 1486-501. PMID 17967061 DOI: 10.1371/Journal.Ppat.0030158  0.708
2007 Nielsen R, Hellmann I, Hubisz M, Bustamante C, Clark AG. Recent and ongoing selection in the human genome. Nature Reviews. Genetics. 8: 857-68. PMID 17943193 DOI: 10.1038/Nrg2187  0.506
2007 McGraw LA, Fiumera AC, Ramakrishnan M, Madhavarapu S, Clark AG, Wolfner MF. Larval rearing environment affects several post-copulatory traits in Drosophila melanogaster. Biology Letters. 3: 607-10. PMID 17711815 DOI: 10.1098/Rsbl.2007.0334  0.711
2007 Huntley MA, Clark AG. Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species. Molecular Biology and Evolution. 24: 2598-609. PMID 17602168 DOI: 10.1093/Molbev/Msm129  0.66
2007 Williamson SH, Hubisz MJ, Clark AG, Payseur BA, Bustamante CD, Nielsen R. Localizing recent adaptive evolution in the human genome. Plos Genetics. 3: e90. PMID 17542651 DOI: 10.1371/Journal.Pgen.0030090  0.552
2007 Fiumera AC, Dumont BL, Clark AG. Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster. Genetics. 176: 1245-60. PMID 17435238 DOI: 10.1534/Genetics.106.064915  0.737
2007 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Clark AG, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247  0.53
2006 Montooth KL, Siebenthall KT, Clark AG. Membrane lipid physiology and toxin catabolism underlie ethanol and acetic acid tolerance in Drosophila melanogaster. The Journal of Experimental Biology. 209: 3837-50. PMID 16985200 DOI: 10.1242/Jeb.02448  0.649
2006 Spencer HG, Clark AG. A chip off the old block: a model for the evolution of genomic imprinting via selection for parental similarity. Genetics. 174: 931-5. PMID 16951072 DOI: 10.1534/Genetics.106.060475  0.318
2006 Lazzaro BP, Sackton TB, Clark AG. Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria. Genetics. 174: 1539-54. PMID 16888344 DOI: 10.1534/Genetics.105.054593  0.806
2006 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Measurement of bottom-quark hadron masses in exclusive J/psi decays with the CDF detector. Physical Review Letters. 96: 202001. PMID 16803166 DOI: 10.1103/Physrevlett.96.202001  0.339
2006 Clark AG. Genomics of the evolutionary process. Trends in Ecology and Evolution. 21: 316-321. PMID 16769431 DOI: 10.1016/J.Tree.2006.04.004  0.374
2006 Fiumera AC, Dumont BL, Clark AG. Natural variation in male-induced 'cost-of-mating' and allele-specific association with male reproductive genes in Drosophila melanogaster. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 355-61. PMID 16612893 DOI: 10.1098/Rstb.2005.1791  0.722
2006 Bachtrog D, Thornton K, Clark A, Andolfatto P. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution; International Journal of Organic Evolution. 60: 292-302. PMID 16610321 DOI: 10.1111/J.0014-3820.2006.Tb01107.X  0.752
2006 Wilson GM, Flibotte S, Missirlis PI, Marra MA, Jones S, Thornton K, Clark AG, Holt RA. Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla. Genome Research. 16: 173-81. PMID 16365383 DOI: 10.1101/Gr.4456006  0.644
2005 Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavaré S, Deloukas P, Dermitzakis ET. Genome-wide associations of gene expression variation in humans. Plos Genetics. 1: e78. PMID 16362079 DOI: 10.1371/Journal.Pgen.0010078  0.378
2005 Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C. Genomic scans for selective sweeps using SNP data. Genome Research. 15: 1566-75. PMID 16251466 DOI: 10.1101/Gr.4252305  0.481
2005 Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. Ascertainment bias in studies of human genome-wide polymorphism. Genome Research. 15: 1496-502. PMID 16251459 DOI: 10.1101/Gr.4107905  0.453
2005 Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD, Civello D, Adams MD, Cargill M, Clark AG. Natural selection on protein-coding genes in the human genome. Nature. 437: 1153-7. PMID 16237444 DOI: 10.1038/Nature04240  0.513
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Search for new physics using high-mass tau pairs from 1.96 TeV pp collisions. Physical Review Letters. 95: 131801. PMID 16197130 DOI: 10.1103/Physrevlett.95.131801  0.362
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Measurement of B(t --> Wb)/B(t--> Wq) at the collider detector at fermilab. Physical Review Letters. 95: 102002. PMID 16196920 DOI: 10.1103/Physrevlett.95.102002  0.359
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Search for long-lived doubly charged Higgs bosons in pp collisions at sqrt[s] = 1.96 TeV. Physical Review Letters. 95: 071801. PMID 16196773 DOI: 10.1103/Physrevlett.95.071801  0.35
2005 Landry CR, Wittkopp PJ, Taubes CH, Ranz JM, Clark AG, Hartl DL. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics. 171: 1813-22. PMID 16143608 DOI: 10.1534/Genetics.105.047449  0.499
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Evidence for B0 s-->phiphi decay and measurements of branching ratio and A(CP) for B+ -->phiK+. Physical Review Letters. 95: 031801. PMID 16090735 DOI: 10.1103/Physrevlett.95.031801  0.351
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the cross section for prompt diphoton production in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 95: 022003. PMID 16090675 DOI: 10.1103/Physrevlett.95.022003  0.356
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Search for anomalous kinematics in tt dilepton events at CDF II. Physical Review Letters. 95: 022001. PMID 16090673 DOI: 10.1103/Physrevlett.95.022001  0.371
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Measurement of the W(+)W(-) production cross section in pp collisions at square root[s]=1.96 TeV using dilepton events. Physical Review Letters. 94: 211801. PMID 16090309 DOI: 10.1103/Physrevlett.94.211801  0.346
2005 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Measurement of partial widths and search for direct CP violation in D0 meson decays to K-K+ and pi-pi+. Physical Review Letters. 94: 122001. PMID 15903906 DOI: 10.1103/Physrevlett.94.122001  0.354
2005 Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, Hubisz MJ, Fledel-Alon A, Tanenbaum DM, Civello D, White TJ, J Sninsky J, Adams MD, Cargill M. A scan for positively selected genes in the genomes of humans and chimpanzees. Plos Biology. 3: e170. PMID 15869325 DOI: 10.1371/Journal.Pbio.0030170  0.763
2005 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. First measurements of inclusive W and Z cross sections from run II of the fermilab tevatron collider. Physical Review Letters. 94: 091803. PMID 15783955 DOI: 10.1103/Physrevlett.94.091803  0.354
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of Wgamma and Zgamma production in pp collisions at square root s=1.96 TeV. Physical Review Letters. 94: 041803. PMID 15783549 DOI: 10.1103/Physrevlett.94.041803  0.356
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Measurement of the lifetime difference between Bs mass eigenstates. Physical Review Letters. 94: 101803. PMID 15783473 DOI: 10.1103/Physrevlett.94.101803  0.361
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... Clark AG, et al. Search for excited and exotic electrons in the egamma decay channel in pp collisions at sqrt[s] = 1.96 TeV. Physical Review Letters. 94: 101802. PMID 15783472 DOI: 10.1103/Physrevlett.94.101802  0.35
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... Clark AG, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305  0.823
2005 Carvalho AB, Clark AG. Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y. Science (New York, N.Y.). 307: 108-10. PMID 15528405 DOI: 10.1126/Science.1101675  0.576
2005 Zhang M, Montooth KL, Wells MT, Clark AG, Zhang D. Mapping multiple Quantitative Trait Loci by Bayesian classification. Genetics. 169: 2305-18. PMID 15520261 DOI: 10.1534/Genetics.104.034181  0.687
2005 Fiumera AC, Dumont BL, Clark AG. Sperm competitive ability in Drosophila melanogaster associated with variation in male reproductive proteins. Genetics. 169: 243-57. PMID 15466425 DOI: 10.1534/Genetics.104.032870  0.747
2004 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Search for doubly charged Higgs bosons decaying to dileptons in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 93: 221802. PMID 15601082 DOI: 10.1103/Physrevlett.93.221802  0.345
2004 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Measurement of the tt production cross section in pp collisions at sqrt[s]=1.96 TeV using dilepton events. Physical Review Letters. 93: 142001. PMID 15524782 DOI: 10.1103/Physrevlett.93.142001  0.363
2004 Acosta D, Affolder T, Ahn MH, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arguin JF, ... Clark AG, et al. Observation of the narrow state X(3872)-->J/psipi+pi- in pp collisions at sqaure root of s=1.96 TeV. Physical Review Letters. 93: 072001. PMID 15324226 DOI: 10.1103/Physrevlett.93.072001  0.365
2004 Acousta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... Clark AG, et al. Search for B0s-->micro+micro- and B0d-->micro+micro- decays in pp collisions at square root s = 1.96 TeV. Physical Review Letters. 93: 032001. PMID 15323815 DOI: 10.1103/Physrevlett.93.032001  0.371
2004 Fullerton SM, Buchanan AV, Sonpar VA, Taylor SL, Smith JD, Carlson CS, Salomaa V, StengÃ¥rd JH, Boerwinkle E, Clark AG, Nickerson DA, Weiss KM. The effects of scale: variation in the APOA1/C3/A4/A5 gene cluster. Human Genetics. 115: 36-56. PMID 15108119 DOI: 10.1007/S00439-004-1106-X  0.322
2004 Lazzaro BP, Sceurman BK, Clark AG. Genetic basis of natural variation in D. melanogaster antibacterial immunity. Science (New York, N.Y.). 303: 1873-6. PMID 15031506 DOI: 10.1126/Science.1092447  0.737
2004 Spencer HG, Feldman MW, Clark AG, Weisstein AE. The effect of genetic conflict on genomic imprinting and modification of expression at a sex-linked locus. Genetics. 166: 565-79. PMID 15020445 DOI: 10.1534/Genetics.166.1.565  0.608
2003 Acosta D, Affolder T, Ahn MH, Akimoto T, Albrow MG, Ambrose D, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arguin JF, Arisawa T, ... ... Clark AG, et al. Measurement of prompt charm meson production cross sections in pp collisions at square root s = 1.96 TeV. Physical Review Letters. 91: 241804. PMID 14683110 DOI: 10.1103/Physrevlett.91.241804  0.361
2003 Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, et al. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science (New York, N.Y.). 302: 1960-3. PMID 14671302 DOI: 10.1126/Science.1088821  0.303
2003 Montooth KL, Marden JH, Clark AG. Mapping determinants of variation in energy metabolism, respiration and flight in Drosophila. Genetics. 165: 623-35. PMID 14573475  0.683
2003 Zhang J, Rowe WL, Clark AG, Buetow KH. Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations. American Journal of Human Genetics. 73: 1073-81. PMID 14560401 DOI: 10.1086/379154  0.307
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  0.652
2003 Lazzaro BP, Clark AG. Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster. Molecular Biology and Evolution. 20: 914-23. PMID 12716986 DOI: 10.1093/Molbev/Msg109  0.729
2003 Dermitzakis ET, Bergman CM, Clark AG. Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites. Molecular Biology and Evolution. 20: 703-14. PMID 12679540 DOI: 10.1093/Molbev/Msg077  0.519
2002 Clark AG, Otto SP. Genomes and evolution population genetics and molecular evolution of whole genomes Current Opinion in Genetics and Development. 12: 631-633. PMID 12433574 DOI: 10.1016/S0959-437X(02)00362-3  0.594
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181  0.316
2002 Lazzaro BP, Sceurman BK, Carney SL, Clark AG. fRFLP and fAFLP: medium-throughput genotyping by fluorescently post-labeling restriction digestion. Biotechniques. 33: 539-40, 542, 545-6. PMID 12238764 DOI: 10.2144/02333St04  0.712
2002 Civetta A, Waldrip-Dail HM, Clark AG. An introgression approach to mapping differences in mating success and sperm competitive ability in Drosophila simulans and D. sechellia. Genetical Research. 79: 65-74. PMID 11974604 DOI: 10.1017/S0016672301005419  0.674
2001 Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 98: 13225-30. PMID 11687639 DOI: 10.1073/Pnas.231484998  0.646
2001 Lazzaro BP, Clark AG. Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster. Genetics. 159: 659-71. PMID 11606542  0.75
2001 Tishkoff SA, Varkonyi R, Cahinhinan N, Abbes S, Argyropoulos G, Destro-Bisol G, Drousiotou A, Dangerfield B, Lefranc G, Loiselet J, Piro A, Stoneking M, Tagarelli A, Tagarelli G, Touma EH, ... ... Clark AG, et al. Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance. Science (New York, N.Y.). 293: 455-62. PMID 11423617 DOI: 10.1126/Science.1061573  0.564
2001 Swanson WJ, Clark AG, Waldrip-Dail HM, Wolfner MF, Aquadro CF. Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 98: 7375-9. PMID 11404480 DOI: 10.1073/Pnas.131568198  0.358
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, ... ... Clark AG, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  0.332
2000 Civetta A, Clark AG. Correlated effects of sperm competition and postmating female mortality. Proceedings of the National Academy of Sciences of the United States of America. 97: 13162-5. PMID 11078508 DOI: 10.1073/Pnas.230305397  0.638
2000 Carvalho AB, Lazzaro BP, Clark AG. Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proceedings of the National Academy of Sciences of the United States of America. 97: 13239-44. PMID 11069293 DOI: 10.1073/Pnas.230438397  0.815
2000 Tishkoff SA, Pakstis AJ, Stoneking M, Kidd JR, Destro-Bisol G, Sanjantila A, Lu RB, Deinard AS, Sirugo G, Jenkins T, Kidd KK, Clark AG. Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins. American Journal of Human Genetics. 67: 901-25. PMID 10986042 DOI: 10.1086/303068  0.645
2000 Fullerton SM, Clark AG, Weiss KM, Nickerson DA, Taylor SL, Stengârd JH, Salomaa V, Vartiainen E, Perola M, Boerwinkle E, Sing CF. Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism. American Journal of Human Genetics. 67: 881-900. PMID 10986041 DOI: 10.1086/303070  0.301
2000 Clark AG, Dermitzakis ET, Civetta A. Nontransitivity of sperm precedence in Drosophila. Evolution; International Journal of Organic Evolution. 54: 1030-5. PMID 10937275 DOI: 10.1111/J.0014-3820.2000.Tb00102.X  0.677
2000 Civetta A, Clark AG. Chromosomal effects on male and female components of sperm precedence in Drosophila. Genetical Research. 75: 143-51. PMID 10816972 DOI: 10.1017/S0016672399004292  0.656
2000 Clark AG, Civetta A. Evolutionary biology. Protamine wars. Nature. 403: 261, 263. PMID 10659834 DOI: 10.1038/35002236  0.689
1999 Carvalho AB, Clark AG. Intron size and natural selection. Nature. 401: 344. PMID 10517631 DOI: 10.1038/43827  0.621
1999 Spencer HG, Clark AG, Feldman MW. Genetic conflicts and the evolutionary origin of genomic imprinting. Trends in Ecology & Evolution. 14: 197-201. PMID 10322534 DOI: 10.1016/S0169-5347(98)01556-0  0.648
1999 Rieder MJ, Taylor SL, Clark AG, Nickerson DA. Sequence variation in the human angiotensin converting enzyme. Nature Genetics. 22: 59-62. PMID 10319862 DOI: 10.1038/8760  0.318
1999 Clark AG, Begun DJ, Prout T. Female x male interactions in Drosophila sperm competition. Science (New York, N.Y.). 283: 217-20. PMID 9880253 DOI: 10.1126/Science.283.5399.217  0.546
1998 Clark AG, Weiss KM, Nickerson DA, Taylor SL, Buchanan A, Stengård J, Salomaa V, Vartiainen E, Perola M, Boerwinkle E, Sing CF. Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase. American Journal of Human Genetics. 63: 595-612. PMID 9683608 DOI: 10.1086/301977  0.314
1998 Spencer HG, Feldman MW, Clark AG. Genetic conflicts, multiple paternity and the evolution of genomic imprinting. Genetics. 148: 893-904. PMID 9504935  0.582
1997 Thomas GH, Newbern EC, Korte CC, Bales MA, Muse SV, Clark AG, Kiehart DP. Intragenic duplication and divergence in the spectrin superfamily of proteins. Molecular Biology and Evolution. 14: 1285-95. PMID 9402739 DOI: 10.1093/Oxfordjournals.Molbev.A025738  0.642
1997 Muse SV, Clark AG, Thomas GH. Comparisons of the nucleotide substitution process among repetitive segments of the alpha- and beta-spectrin genes. Journal of Molecular Evolution. 44: 492-500. PMID 9115173 DOI: 10.1007/Pl00006173  0.657
1997 Clark AG, Zheng Y. Dynamics of linkage disequilibrium in bacterial genomes undergoing transformation and/or conjugation Journal of Evolutionary Biology. 10: 663-676. DOI: 10.1046/J.1420-9101.1997.10040663.X  0.354
1996 Clark AG, Leicht BG, Muse SV. Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Molecular Biology and Evolution. 13: 471-82. PMID 8742636 DOI: 10.1093/Oxfordjournals.Molbev.A025608  0.697
1995 Clark AG, Aguadé M, Prout T, Harshman LG, Langley CH. Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster. Genetics. 139: 189-201. PMID 7705622  0.569
1995 Leicht BG, Muse SV, Hanczyc M, Clark AG. Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics. 139: 299-308. PMID 7535717  0.691
1995 Goldstein DB, Clark AG. Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Research. 23: 3882-6. PMID 7479031 DOI: 10.1093/Nar/23.19.3882  0.515
1994 Clark AG, Silveria S, Meyers W, Langley CH. Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions. Proceedings of the National Academy of Sciences of the United States of America. 91: 719-22. PMID 8290588 DOI: 10.1073/Pnas.91.2.719  0.575
1994 Clark AG. Invasion and maintenance of a gene duplication. Proceedings of the National Academy of Sciences of the United States of America. 91: 2950-2954. PMID 8159686 DOI: 10.1073/Pnas.91.8.2950  0.33
1991 Clark AG, Szumski FM, Lyckegaard EMS. Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates. Genetics Research. 58: 7-13. PMID 1936985 DOI: 10.1017/S0016672300029554  0.358
1991 Lyckegaard EMS, Clark AG. Evolution of ribosomal RNA gene copy number on the sex chromosomes of Drosophila melanogaster. Molecular Biology and Evolution. 8: 458-474. PMID 1921706 DOI: 10.1093/Oxfordjournals.Molbev.A040664  0.308
1989 Lyckegaard EMS, Clark AG. Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 86: 1944-1948. PMID 2494656 DOI: 10.1073/Pnas.86.6.1944  0.309
1986 Clark AG, Feldman MW. A numerical simulation of the one-locus, multiple-allele fertility model. Genetics. 113: 161-76. PMID 3710142  0.542
1986 Teague BD, Clark AG, Doane WW. Developmental analysis of lipids from wild-type and adipose60 mutants of Drosophila melanogaster. The Journal of Experimental Zoology. 240: 95-104. PMID 3095486 DOI: 10.1002/Jez.1402400112  0.546
1986 Whittam TS, Clark AG, Stoneking M, Cann RL, Wilson AC. Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proceedings of the National Academy of Sciences of the United States of America. 83: 9611-5. PMID 2432597 DOI: 10.1073/Pnas.83.24.9611  0.32
1984 Clark AG, Doane WW. INTERACTIONS BETWEEN THE AMYLASE AND ADIPOSE CHROMOSOMAL REGIONS OF DROSOPHILA MELANOGASTER. Evolution; International Journal of Organic Evolution. 38: 957-982. PMID 28555787 DOI: 10.1111/J.1558-5646.1984.Tb00366.X  0.64
1983 Clark AG, Doane WW. Desiccation tolerance of the adipose60 mutant of Drosophila melanogaster. Hereditas. 99: 165-75. PMID 6421774 DOI: 10.1111/J.1601-5223.1983.Tb00888.X  0.596
1981 Clark AG, Feldman MW. Density-Dependent Fertility Selection in Experimental Populations of DROSOPHILA MELANOGASTER. Genetics. 98: 849-69. PMID 17249109  0.537
1981 Clark AG, Feldman MW. Disequilibrium between linked inversions: an alternative hypothesis. Heredity. 46: 379-90. PMID 6792164 DOI: 10.1038/Hdy.1981.46  0.576
1981 Clark AG, Feldman MW. The estimation of epistasis in components of fitness in experimental populations of drosophila melanogaster II. Assessment of meiotic drive, viability, fecundity and sexual selection. Heredity. 46: 347-77. PMID 6792163 DOI: 10.1038/Hdy.1981.45  0.581
1981 Clark AG, Feldman MW, Christiansen FB. The estimation of epistasis in components of fitness in experimental populations of Drosophila melanogaster I. A two-stage maximum likelihood model. Heredity. 46: 321-46. PMID 6792162 DOI: 10.1038/Hdy.1981.44  0.558
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