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Andy Clark - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
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456 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tran KA, Kraus E, Clark AT, Bennett A, Pogoda K, Cheng X, Ce Bers A, Janmey PA, Galie PA. Dynamic Tuning of Viscoelastic Hydrogels with Carbonyl Iron Microparticles Reveals the Rapid Response of Cells to Three-Dimensional Substrate Mechanics. Acs Applied Materials & Interfaces. PMID 33909398 DOI: 10.1021/acsami.0c21868  0.52
2021 Champer J, Kim IK, Champer SE, Clark AG, Messer PW. Suppression gene drive in continuous space can result in unstable persistence of both drive and wild-type alleles. Molecular Ecology. PMID 33404162 DOI: 10.1111/mec.15788  0.6
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Clark AG, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.96
2020 Delbare SYN, Ahmed-Braimah YH, Wolfner MF, Clark AG. Interactions between the microbiome and mating influence the female's transcriptional profile in Drosophila melanogaster. Scientific Reports. 10: 18168. PMID 33097776 DOI: 10.1038/s41598-020-75156-9  0.64
2020 Ågren JA, Munasinghe M, Clark AG. Mitochondrial-Y chromosome epistasis in . Proceedings. Biological Sciences. 287: 20200469. PMID 33081607 DOI: 10.1098/rspb.2020.0469  0.56
2020 Wigby S, Brown NC, Allen SE, Misra S, Sitnik JL, Sepil I, Clark AG, Wolfner MF. The seminal proteome and its role in postcopulatory sexual selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20200072. PMID 33070726 DOI: 10.1098/rstb.2020.0072  0.6
2020 Ding Q, Hu Y, Koren A, Clark AG. Mutation Rate Variability across Human Y-Chromosome Haplogroups. Molecular Biology and Evolution. PMID 33049047 DOI: 10.1093/molbev/msaa268  0.36
2020 Ahmed-Braimah YH, Wolfner MF, Clark AG. Differences in post-mating transcriptional responses between conspecific and heterospecific matings in Drosophila. Molecular Biology and Evolution. PMID 33035303 DOI: 10.1093/molbev/msaa264  0.64
2020 Champer J, Yang E, Lee E, Liu J, Clark AG, Messer PW. A CRISPR homing gene drive targeting a haplolethal gene removes resistance alleles and successfully spreads through a cage population. Proceedings of the National Academy of Sciences of the United States of America. PMID 32929034 DOI: 10.1073/Pnas.2004373117  0.6
2020 Cosgrove EJ, Sadeghi R, Schlamp F, Holl HM, Moradi-Shahrbabak M, Miraei-Ashtiani SR, Abdalla S, Shykind B, Troedsson M, Stefaniuk-Szmukier M, Prabhu A, Bucca S, Bugno-Poniewierska M, Wallner B, Malek J, ... ... Clark AG, et al. Genome Diversity and the Origin of the Arabian Horse. Scientific Reports. 10: 9702. PMID 32546689 DOI: 10.1038/S41598-020-66232-1  0.44
2020 Li Q, Ding X, Xia G, Chen HG, Chen F, Geng Z, Xu L, Lei S, Pan A, Wang L, Wang Z. Eosinopenia and elevated C-reactive protein facilitate triage of COVID-19 patients in fever clinic: a retrospective case-control study. Eclinicalmedicine. 100375. PMID 32368728 DOI: 10.1016/J.Eclinm.2020.100375  0.56
2020 Jiang ZY, Kinami S, Nakamura N, Miyata T, Fujita H, Takamura H, Ueda N, Kosaka T. Diagnostic ability of multi-detector spiral computed tomography for pathological lymph node metastasis of advanced gastric cancer. World Journal of Gastrointestinal Oncology. 12: 435-446. PMID 32368321 DOI: 10.4251/wjgo.v12.i4.435  0.32
2020 Wang L, Lin ZG, Ke Q, Lou JY, Zheng SG, Bi XY, Wang JM, Guo W, Li FY, Wang J, Zheng YM, Li JD, Cheng S, Zhou WP, Zeng YY. Adjuvant transarterial chemoembolization following radical resection for intrahepatic cholangiocarcinoma: A multi-center retrospective study. Journal of Cancer. 11: 4115-4122. PMID 32368294 DOI: 10.7150/jca.40358  0.64
2020 Zheng K, Xie C, Li X, Wu W, Li A, Qian S, Pang Q. Crystal structures, thermal stabilities, and dissolution behaviours of tinidazole and the tinidazole-vanillic acid cocrystal: insights from energy frameworks. Acta Crystallographica. Section C, Structural Chemistry. 76: 389-397. PMID 32367818 DOI: 10.1107/S2053229620004180  0.6
2020 Chen X, Hu N, Wei H, Wang H. Chiral Fluorescent Recognition by Naphthalimide. Journal of Fluorescence. PMID 32367338 DOI: 10.1007/s10895-020-02539-6  0.48
2020 Rakov DA, Chen F, Ferdousi SA, Li H, Pathirana T, Simonov AN, Howlett PC, Atkin R, Forsyth M. Engineering high-energy-density sodium battery anodes for improved cycling with superconcentrated ionic-liquid electrolytes. Nature Materials. PMID 32367080 DOI: 10.1038/S41563-020-0673-0  0.32
2020 Liu K, Li T, Vongpradith A, Wang F, Peng Y, Wang W, Chai C, Chen S, Zhang Y, Zhou L, Chen X, Bian Q, Chen B, Wang X, Jiang J. Identification and Prediction of Tuberculosis in Eastern China: Analyses from 10-year Population-based Notification Data in Zhejiang Province, China. Scientific Reports. 10: 7425. PMID 32367050 DOI: 10.1038/s41598-020-64387-5  0.72
2020 Mao Z, Guo X, Zhong Y, Liu X. Surgical outcomes of Ahmed glaucoma valve implantation in patients with glaucoma secondary to iridocorneal endothelial syndrome. Eye (London, England). PMID 32367005 DOI: 10.1038/s41433-020-0912-2  0.36
2020 Liu F, Jiang FB, Li YT, Liu RM, Wu ZY, Yan CW. Cocrystallization with syringic acid presents a new opportunity for effectively reducing the hepatotoxicity of isoniazid. Drug Development and Industrial Pharmacy. 1-27. PMID 32366135 DOI: 10.1080/03639045.2020.1764024  0.6
2020 Ha H, Keam B, Ock CY, Heo DS. Efficacy of cyclophosphamide, doxorubicin, and cisplatin for adenoid cystic carcinoma, and their relationship with the pre-chemotherapy tumor growth rate. Chinese Clinical Oncology. 9: 15. PMID 32366107 DOI: 10.21037/cco.2020.03.07  0.52
2020 Ye J, Li X, Zhang X, Zhang Q, Chen W. Deep Learning-Based Human Activity Real-Time Recognition for Pedestrian Navigation. Sensors (Basel, Switzerland). 20. PMID 32366055 DOI: 10.3390/s20092574  0.48
2020 Hong S, Yuan Y, Zhang K, Lian H, Liimatainen H. Efficient Hydrolysis of Chitin in a Deep Eutectic Solvent Synergism for Production of Chitin Nanocrystals. Nanomaterials (Basel, Switzerland). 10. PMID 32365931 DOI: 10.3390/nano10050869  0.4
2020 Wu M, Zhou X, Croft M, Ehrlich S, Khalid S, Wen W, Lapidus SH, Xu X, Li MR, Liu Z, Cheong SW. Single-Crystal Growth and Room-Temperature Magnetocaloric Effect of X-Type Hexaferrite SrCoFeO. Inorganic Chemistry. PMID 32364708 DOI: 10.1021/Acs.Inorgchem.9B03724  0.44
2020 Du JB, Wang JJ, Li WY, Huo XY, Li YN, Chen ST, Cong HL, Wu SY, Wei YL. Long-term treatment effect of a modified jailed-balloon technique for de Winter syndrome: a case report. The Journal of International Medical Research. 48: 300060520905488. PMID 32363966 DOI: 10.1177/0300060520905488  0.72
2020 Jiang H, Zhang W, Kang X, Cao Z, Chen X, Liu Y, Cui Y. Topology-Based Functionalization of Robust Chiral Zr-Based Metal-Organic Frameworks for Catalytic Enantioselective Hydrogenation. Journal of the American Chemical Society. PMID 32363868 DOI: 10.1021/jacs.0c00637  0.68
2020 Flynn JM, Hubley R, Goubert C, Rosen J, Clark AG, Feschotte C, Smit AF. RepeatModeler2 for automated genomic discovery of transposable element families. Proceedings of the National Academy of Sciences of the United States of America. PMID 32300014 DOI: 10.1073/Pnas.1921046117  0.72
2020 Chen G, Wu D, Guo W, Cao Y, Huang D, Wang H, Wang T, Zhang X, Chen H, Yu H, Zhang X, Zhang M, Wu S, Song J, Chen T, et al. Clinical and immunologic features in severe and moderate Coronavirus Disease 2019. The Journal of Clinical Investigation. PMID 32217835 DOI: 10.1172/JCI137244  0.52
2020 Champer SE, Oh SY, Liu C, Wen Z, Clark AG, Messer PW, Champer J. Computational and experimental performance of CRISPR homing gene drive strategies with multiplexed gRNAs. Science Advances. 6: eaaz0525. PMID 32181354 DOI: 10.1126/Sciadv.Aaz0525  0.6
2020 Champer J, Kim IK, Champer SE, Clark AG, Messer PW. Performance analysis of novel toxin-antidote CRISPR gene drive systems. Bmc Biology. 18: 27. PMID 32164660 DOI: 10.1186/S12915-020-0761-2  0.6
2020 Bezchlibnyk YB, Sharma VD, Naik KB, Isbaine F, Gale JT, Cheng J, Triche SD, Miocinovic S, Buetefisch CM, Willie JT, Boulis NM, Factor SA, Wichmann T, DeLong MR, Gross RE. Clinical outcomes of globus pallidus deep brain stimulation for Parkinson disease: a comparison of intraoperative MRI- and MER-guided lead placement. Journal of Neurosurgery. 1-11. PMID 32114534 DOI: 10.3171/2019.12.Jns192010  0.32
2020 Champer J, Lee E, Yang E, Liu C, Clark AG, Messer PW. A toxin-antidote CRISPR gene drive system for regional population modification. Nature Communications. 11: 1082. PMID 32109227 DOI: 10.1038/S41467-020-14960-3  0.6
2020 Hafezi Y, Sruba SR, Tarrash SR, Wolfner MF, Clark AG. Dissecting Fertility Functions of a Y Chromosome Genes with CRISPR. Genetics. PMID 32098759 DOI: 10.1534/Genetics.120.302672  0.6
2020 Jiang J, Bramão I, Khazenzon A, Wang SF, Johansson M, Wagner AD. Temporal Dynamics of Memory-guided Cognitive Control and Generalization of Control via Overlapping Associative Memories. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 32019830 DOI: 10.1523/Jneurosci.1869-19.2020  0.64
2020 Luo S, Zhang H, Duan Y, Yao X, Clark AG, Lu J. The evolutionary arms race between transposable elements and piRNAs in Drosophila melanogaster. Bmc Evolutionary Biology. 20: 14. PMID 31992188 DOI: 10.1186/S12862-020-1580-3  1
2020 Flynn JM, Long M, Wing RA, Clark AG. Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis. Molecular Biology and Evolution. PMID 31960929 DOI: 10.1093/Molbev/Msaa010  0.72
2020 Lu L, Zhao J, Li C. High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (). G3 (Bethesda, Md.). PMID 31953307 DOI: 10.1534/g3.119.400930  0.84
2019 Pei YP, Wang YY, Liu D, Lei HY, Yang ZH, Zhang ZW, Han M, Cheng K, Chen YS, Li JQ, Cheng GR, Xu L, Wu QM, McClintock SM, Yang Y, et al. ICAM5 as a novel target for treating cognitive impairment in Fragile X Syndrome. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 31882402 DOI: 10.1523/Jneurosci.2626-18.2019  0.68
2019 Gilbert J, O'Connor M, Templet S, Moghaddam M, Di Via Ioschpe A, Sinclair A, Zhu LQ, Xu W, Man HY. NEXMIF/KIDLIA knockout mouse demonstrates autism-like behaviors, memory deficits, and impairments in synapse formation and function. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 31704787 DOI: 10.1523/Jneurosci.0222-19.2019  0.52
2019 Lower SE, Dion-Côté AM, Clark AG, Barbash DA. Special Issue: Repetitive DNA Sequences. Genes. 10. PMID 31698818 DOI: 10.3390/Genes10110896  1
2019 Ren Y, Chen Z, Yu X. Ultrathin, Porous and Oxygen Vacancies-Enriched Ag/WO3-x Heterostructures for Electrocatalytic Hydrogen Evolution. Chemistry, An Asian Journal. PMID 31631572 DOI: 10.1002/asia.201901319  0.6
2019 Rosenfeld CS, Hekman JP, Johnson JL, Lyu Z, Ortega MT, Joshi T, Mao J, Vladimirova AV, Gulevich RG, Kharlamova AV, Acland GM, Hecht EE, Wang X, Clark AG, Trut LN, et al. Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Genes, Brain, and Behavior. PMID 31605445 DOI: 10.1111/Gbb.12614  1
2019 Wang Q, Onuma K, Liu C, Wong H, Bloom MS, Elliott EE, Cao RR, Hu N, Lingampalli N, Sharpe O, Zhao X, Sohn DH, Lepus CM, Sokolove J, Mao R, et al. Dysregulated integrin αVβ3 and CD47 signaling promotes joint inflammation, cartilage breakdown, and progression of osteoarthritis. Jci Insight. 4. PMID 31534047 DOI: 10.1172/Jci.Insight.128616  0.32
2019 Fragoza R, Das J, Wierbowski SD, Liang J, Tran TN, Liang S, Beltran JF, Rivera-Erick CA, Ye K, Wang TY, Yao L, Mort M, Stenson PD, Cooper DN, Wei X, ... ... Clark AG, et al. Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. Nature Communications. 10: 4141. PMID 31515488 DOI: 10.1038/S41467-019-11959-3  0.52
2019 Zhou D, Hao J, Clark A, Kim KH, Zhu L, Liu J, Cheng X, Li B. Sono-assisted surface energy driven assembly of 2D materials on flexible polymer substrates: A green assembly method using water. Acs Applied Materials & Interfaces. PMID 31430115 DOI: 10.1021/Acsami.9B10469  0.52
2019 Montesinos-López O, Montesinos-López A, Crossa J, Cuevas J, Montesinos-López JC, Salas Gutiérrez Z, Lillemo M, Philomin J, Singh R. A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data. G3 (Bethesda, Md.). PMID 31427455 DOI: 10.1534/g3.119.400336  0.52
2019 Gray EE, Murphy JG, Liu Y, Trang I, Tabor GT, Lin L, Hoffman DA. Disruption of GpI mGluR-dependent Cav2.3 translation in a mouse model of Fragile X Syndrome. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 31350260 DOI: 10.1523/Jneurosci.1443-17.2019  0.52
2019 Howard R, Gianola D, Montesinos-López O, Juliana P, Singh R, Poland J, Shrestha S, Pérez-Rodríguez P, Crossa J, Jarquín D. Joint Use of Genome, Pedigree and Their Interaction with Environment for Predicting the Performance of Wheat Lines in New Environments. G3 (Bethesda, Md.). PMID 31300481 DOI: 10.1534/G3.119.400508  0.36
2019 Ley B, Torgerson DG, Oldham JM, Adegunsoye A, Liu S, Li J, Elicker BM, Henry TS, Golden JA, Jones KD, Dressen A, Yaspan BL, Arron JR, Noth I, Hoffmann TJ, et al. Rare Protein-altering Telomere-related Gene Variants in Patients with Chronic Hypersensitivity Pneumonitis. American Journal of Respiratory and Critical Care Medicine. PMID 31268371 DOI: 10.1164/Rccm.201902-0360Oc  0.32
2019 Bao J, Liu A, Zhao C, Hao F, Su X, Bao L, Zhao L. Correlation Between Dual-Energy Computed Tomography Single Scan and Computed Tomography Perfusion for Pancreatic Cancer Patients: Initial Experience. Journal of Computer Assisted Tomography. PMID 31162238 DOI: 10.1097/RCT.0000000000000878  0.44
2019 Bitra A, Nemčovičová I, Picarda G, Doukov T, Wang J, Benedict CA, Zajonc DM. Structure of human cytomegalovirus UL144, an HVEM orthologue, bound to the B and T cell Lymphocyte Attenuator. The Journal of Biological Chemistry. PMID 31126984 DOI: 10.1074/jbc.RA119.009199  0.4
2019 Terzyan SS, Shen T, Liu X, Huang Q, Teng P, Zhou M, Hilberg F, Cai J, Mooers BHM, Wu J. Structural basis of resistance of mutant RET protein tyrosine kinase to its inhibitors nintedanib and vandetanib. The Journal of Biological Chemistry. PMID 31118272 DOI: 10.1074/Jbc.Ra119.007682  0.36
2019 Chen DS, Delbare SYN, White SL, Sitnik J, Chatterjee M, DoBell E, Weiss O, Clark AG, Wolfner MF. Female Genetic Contributions to Sperm Competition in . Genetics. PMID 31101677 DOI: 10.1534/Genetics.119.302284  0.6
2019 Corbin E, Vite A, Peyster EG, Bhoopalam M, Brandimarto J, Wang X, Bennett AI, Clark AT, Cheng X, Turner KT, Musunuru K, Margulies K. Tunable and Reversible Substrate Stiffness Reveals Dynamic Mechanosensitivity of Cardiomyocytes. Acs Applied Materials & Interfaces. PMID 31074953 DOI: 10.1021/Acsami.9B02446  1
2019 Ågren JA, Munasinghe M, Clark AG. Sexual conflict through mother's curse and father's curse. Theoretical Population Biology. PMID 31054851 DOI: 10.1016/J.Tpb.2018.12.007  0.56
2019 Zhu W, Zhen H, Ding N, Jing H, Huo L. Inconsistency Between Contrast-Enhanced CT and Bone Scintigraphy in Revealing Radiation Nephritis. Clinical Nuclear Medicine. PMID 31021909 DOI: 10.1097/RLU.0000000000002579  0.4
2019 Zhang Z, Huang Q, Tao X, Song G, Zheng P, Li H, Sun H, Xia W. The unique trimeric assembly of the virulence factor HtrA from occurs via N-terminal domain swapping. The Journal of Biological Chemistry. PMID 30936204 DOI: 10.1074/jbc.RA119.007387  0.8
2019 Champer J, Wen Z, Luthra A, Reeves R, Chung J, Liu C, Lee YL, Liu J, Yang E, Messer PW, Clark AG. CRISPR Gene Drive Efficiency and Resistance Rate Is Highly Heritable with No Common Genetic Loci of Large Effect. Genetics. PMID 30918006 DOI: 10.1534/Genetics.119.302037  0.6
2019 Kachroo P, Eraso JM, Beres SB, Olsen RJ, Zhu L, Nasser W, Bernard PE, Cantu CC, Saavedra MO, Arredondo MJ, Strope B, Do H, Kumaraswami M, Vuopio J, Gröndahl-Yli-Hannuksela K, ... ... Clark AG, et al. Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis. Nature Genetics. PMID 30778225 DOI: 10.1038/S41588-018-0343-1  0.52
2019 Liu J, Champer J, Langmüller AM, Liu C, Chung J, Reeves R, Luthra A, Lee YL, Vaughn AH, Clark AG, Messer PW. Maximum Likelihood Estimation of Fitness Components in Experimental Evolution. Genetics. PMID 30679262 DOI: 10.1534/Genetics.118.301893  0.6
2019 Champer J, Chung J, Lee YL, Liu C, Yang E, Wen Z, Clark AG, Messer PW. Molecular safeguarding of CRISPR gene drive experiments. Elife. 8. PMID 30666960 DOI: 10.7554/Elife.41439  0.6
2018 Delbare SYN, Clark AG. Allele-specific expression elucidates cis-regulatory logic. Plos Genetics. 14: e1007690. PMID 30383744 DOI: 10.1371/Journal.Pgen.1007690  0.6
2018 Wang X, Pipes L, Trut LN, Herbeck Y, Vladimirova AV, Gulevich RG, Kharlamova AV, Johnson JL, Acland GM, Kukekova AV, Clark AG. Genomic responses to selection for tame/aggressive behaviors in the silver fox (). Proceedings of the National Academy of Sciences of the United States of America. PMID 30228118 DOI: 10.1073/Pnas.1800889115  1
2018 Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, ... ... Clark AG, et al. Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30104754 DOI: 10.1038/S41559-018-0664-6  1
2018 Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, ... ... Clark AG, et al. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nature Ecology & Evolution. PMID 30082739 DOI: 10.1038/S41559-018-0611-6  1
2018 Reid WR, Sun H, Becnel JJ, Clark AG, Scott JG. Overexpression of a glutathione S-transferase (Mdgst) and a galactosyltransferase-like gene (Mdgt1) is responsible for imidacloprid resistance in house flies. Pest Management Science. PMID 29931724 DOI: 10.1002/Ps.5125  0.52
2018 Flynn JM, Lower SE, Barbash DA, Clark AG. Rates and patterns of mutation in tandem repetitive DNA in six independent lineages of Chlamydomonas reinhardtii. Genome Biology and Evolution. PMID 29931069 DOI: 10.1093/Gbe/Evy123  1
2018 Champer J, Liu J, Oh SY, Reeves R, Luthra A, Oakes N, Clark AG, Messer PW. Reducing resistance allele formation in CRISPR gene drive. Proceedings of the National Academy of Sciences of the United States of America. PMID 29735716 DOI: 10.1073/Pnas.1720354115  0.6
2018 Lower SS, McGurk MP, Clark AG, Barbash DA. Satellite DNA evolution: old ideas, new approaches. Current Opinion in Genetics & Development. 49: 70-78. PMID 29579574 DOI: 10.1016/J.Gde.2018.03.003  1
2018 Wei KH, Lower SE, Caldas IV, Sless TJ, Barbash DA, Clark AG. Variable rates of simple satellite gains across the Drosophila phylogeny. Molecular Biology and Evolution. PMID 29361128 DOI: 10.1093/Molbev/Msy005  1
2018 Champer J, Chung J, Lee YL, Liu C, Yang E, Wen Z, Clark AG, Messer PW. Author response: Molecular safeguarding of CRISPR gene drive experiments Elife. DOI: 10.7554/Elife.41439.010  0.6
2017 Delbare SYN, Chow CY, Wolfner MF, Clark AG. Roles of female and male genotype in post-mating responses in Drosophila melanogaster: Roles of female and male genotype in female Drosophila melanogaster transcriptional, physiological and behavioral responses to mating. The Journal of Heredity. PMID 29036644 DOI: 10.1093/Jhered/Esx081  0.6
2017 Flynn JM, Caldas I, Cristescu ME, Clark AG. Selection Constrains High Rates of Tandem Repetitive DNA Mutation in Daphnia pulex. Genetics. PMID 28811387 DOI: 10.1534/Genetics.117.300146  0.72
2017 Ahmed-Braimah YH, Unckless RL, Clark AG. Evolutionary Dynamics of Male Reproductive Genes in the Drosophila virilis Subgroup. G3 (Bethesda, Md.). PMID 28739599 DOI: 10.1534/G3.117.1136  1
2017 Champer J, Reeves R, Oh SY, Liu C, Liu J, Clark AG, Messer PW. Novel CRISPR/Cas9 gene drive constructs reveal insights into mechanisms of resistance allele formation and drive efficiency in genetically diverse populations. Plos Genetics. 13: e1006796. PMID 28727785 DOI: 10.1371/Journal.Pgen.1006796  0.6
2017 Early AM, Clark AG. Genomic signatures of local adaptation in the Drosophila immune response. Fly. 0. PMID 28586288 DOI: 10.1080/19336934.2017.1337612  0.32
2017 Wei KH, Reddy HM, Rathnam C, Lee J, Lin D, Ji S, Mason JM, Clark AG, Barbash DA. A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver in Drosophila. Genetics. PMID 28258181 DOI: 10.1534/Genetics.116.197335  1
2017 Giardina TJ, Clark AG, Fiumera AC. Estimating mating rates in wild Drosophila melanogaster females by decay rates of male reproductive proteins in their reproductive tracts. Molecular Ecology Resources. PMID 28213940 DOI: 10.1111/1755-0998.12661  1
2017 Early AM, Shanmugarajah N, Buchon N, Clark AG. Drosophila Genotype Influences Commensal Bacterial Levels. Plos One. 12: e0170332. PMID 28095502 DOI: 10.1371/Journal.Pone.0170332  0.32
2017 Sackton TB, Lazzaro BP, Andrew CG. Rapid expansion of immune-related gene families in the house fly, Musca domestica. Molecular Biology and Evolution. PMID 28087775 DOI: 10.1093/Molbev/Msw285  0.76
2016 Mehrmohamadi M, Mentch LK, Clark AG, Locasale JW. Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism. Nature Communications. 7: 13666. PMID 27966532 DOI: 10.1038/Ncomms13666  0.4
2016 Unckless RL, Clark AG, Messer PW. Evolution of Resistance Against CRISPR/Cas9 Gene Drive. Genetics. PMID 27941126 DOI: 10.1534/Genetics.116.197285  1
2016 Early AM, Arguello JR, Cardoso-Moreira M, Gottipati S, Grenier JK, Clark AG. Survey of Global Genetic Diversity Within the Drosophila Immune System. Genetics. PMID 27815361 DOI: 10.1534/Genetics.116.195016  0.72
2016 Guo Y, Alexander K, Clark AG, Grimson A, Yu H. Integrated network analysis reveals distinct regulatory roles of transcription factors and microRNAs. Rna (New York, N.Y.). PMID 27604961 DOI: 10.1261/Rna.048025.114  0.52
2016 Wang X, Werren JH, Clark AG. Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. Plos Biology. 14: e1002500. PMID 27380029 DOI: 10.1371/Journal.Pbio.1002500  1
2016 Arguello JR, Cardoso-Moreira M, Grenier JK, Gottipati S, Clark AG, Benton R. Extensive local adaptation within the chemosensory system following Drosophila melanogaster's global expansion. Nature Communications. 7: ncomms11855. PMID 27292132 DOI: 10.1038/Ncomms11855  1
2016 Cardoso-Moreira M, Arguello JR, Gottipati S, Harshman LG, Grenier JK, Clark AG. Evidence for the fixation of gene duplications by positive selection in Drosophila. Genome Research. PMID 27197209 DOI: 10.1101/Gr.199323.115  1
2016 Jackson M, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ. Signatures of early frailty in the gut microbiota. Genome Medicine. 8: 8. PMID 26822992 DOI: 10.1186/S13073-016-0262-7  1
2016 Rodriguez-Flores J, Fakhro K, Agosto-Perez F, Ramstetter M, Arbiza L, Vincent T, Robay A, Malek J, Suhre K, Chouchane L, Badii R, Al-Nabet Al-Marri A, Abi Khalil C, Zirie M, Jayyousi A, ... ... Clark A, et al. Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations. Genome Research. PMID 26728717 DOI: 10.1101/Gr.191478.115  1
2016 Liu X, Ward K, Xavier C, Jann J, Clark AF, Pang IH, Wu H. The novel triterpenoid RTA 408 protects human retinal pigment epithelial cells against H2O2-induced cell injury via NF-E2-related factor 2 (Nrf2) activation Redox Biology. 8: 98-109. DOI: 10.1016/j.redox.2015.12.005  0.4
2015 Chow CY, Kelsey KJ, Wolfner MF, Clark AG. Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila. Human Molecular Genetics. PMID 26662796 DOI: 10.1093/Hmg/Ddv502  0.76
2015 Li Z, Clark AW, Cooper JM. Dual Color Plasmonic Pixels Create a Polarization Controlled Nano Color Palette. Acs Nano. PMID 26631346 DOI: 10.1021/acsnano.5b05411  0.64
2015 Clark AJ, Tan X, McKinley PK. Evolutionary multiobjective design of a flexible caudal fin for robotic fish. Bioinspiration & Biomimetics. 10: 065006. PMID 26601975 DOI: 10.1088/1748-3190/10/6/065006  0.36
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Search for metastable heavy charged particles with large ionisation energy loss in pp collisions at [Formula: see text] TeV using the ATLAS experiment. The European Physical Journal. C, Particles and Fields. 75: 407. PMID 26543401 DOI: 10.1140/Epjc/S10052-015-3609-0  0.44
2015 Alexander KA, Wang X, Shibata M, Clark AG, García-García MJ. TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming. Cell Reports. PMID 26527006 DOI: 10.1016/J.Celrep.2015.09.078  0.44
2015 Hsu FM, Clark A, Chen PY. Epigenetic reprogramming in the mammalian germline. Oncotarget. PMID 26506592 DOI: 10.18632/oncotarget.6206  0.32
2015 Slavney A, Arbiza L, Clark AG, Keinan A. Strong constraint on human genes escaping X-inactivation is modulated by their expression level and breadth in both sexes. Molecular Biology and Evolution. PMID 26494842 DOI: 10.1093/Molbev/Msv225  1
2015 Clark AT, Zwaka TP. Editorial overview: Cell reprogramming, regeneration and repair: Reprogramming: the eternal circle. Current Opinion in Genetics & Development. PMID 26476785 DOI: 10.1016/J.Gde.2015.09.006  1
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Two-particle Bose-Einstein correlations in pp collisions at [Formula: see text] 0.9 and 7 TeV measured with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 466. PMID 26457062 DOI: 10.1140/Epjc/S10052-015-3644-X  0.44
2015 Zhang J, Hobkirk J, Carroll S, Pellicori P, Clark AL, Cleland JG. Exploring quality of life in patients with and without heart failure. International Journal of Cardiology. 202: 676-684. PMID 26453816 DOI: 10.1016/j.ijcard.2015.09.076  0.44
2015 Clark AT. DNA methylation remodeling in vitro and in vivo. Current Opinion in Genetics & Development. 34: 82-87. PMID 26451496 DOI: 10.1016/J.Gde.2015.09.002  1
2015 Carvalho AB, Vicoso B, Russo CA, Swenor B, Clark AG. Birth of a new gene on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 112: 12450-5. PMID 26385968 DOI: 10.1073/Pnas.1516543112  1
2015 Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, Spector TD, Keinan A, Ley RE, Gevers D, Clark AG. Host genetic variation impacts microbiome composition across human body sites. Genome Biology. 16: 191. PMID 26374288 DOI: 10.1186/S13059-015-0759-1  0.48
2015 MacIver DH, Clark AL. The key role of the RV in the pathogenesis of acute pulmonary oedema. Heart (British Cardiac Society). PMID 26338978 DOI: 10.1136/heartjnl-2015-308531  0.44
2015 Millar JC, Phan TN, Pang IH, Clark AF. Strain and Age Effects on Aqueous Humor Dynamics in the Mouse. Investigative Ophthalmology & Visual Science. 56: 5764-76. PMID 26325415 DOI: 10.1167/iovs.15-16720  0.4
2015 Choudhury S, Liu Y, Clark AF, Pang IH. Caspase-7: a critical mediator of optic nerve injury-induced retinal ganglion cell death. Molecular Neurodegeneration. 10: 40. PMID 26306916 DOI: 10.1186/s13024-015-0039-2  0.48
2015 Pellicori P, Clark AL. Clinical trials update from the European Society of Cardiology-Heart Failure meeting 2015: AUGMENT-HF, TITRATION, STOP-HF, HARMONIZE, LION HEART, MOOD-HF, and renin-angiotensin inhibitors in patients with heart and renal failure. European Journal of Heart Failure. 17: 979-83. PMID 26289928 DOI: 10.1002/ejhf.340  0.44
2015 McDowell CM, Hernandez H, Mao W, Clark AF. Gremlin Induces Ocular Hypertension in Mice Through Smad3-Dependent Signaling. Investigative Ophthalmology & Visual Science. 56: 5485-92. PMID 26284554 DOI: 10.1167/iovs.15-16993  0.56
2015 Oliveros-Etter M, Li Z, Nee K, Hosohama L, Hargan-Calvopina J, Lee SA, Joti P, Yu J, Clark AT. PGC Reversion to Pluripotency Involves Erasure of DNA Methylation from Imprinting Control Centers followed by Locus-Specific Re-methylation. Stem Cell Reports. PMID 26278040 DOI: 10.1016/J.Stemcr.2015.07.006  1
2015 O'Brien C, Clark AF. Introduction to EER Special Issue on ocular fibrosis. Experimental Eye Research. PMID 26253011 DOI: 10.1016/j.exer.2015.08.002  0.56
2015 Unckless RL, Messer PW, Connallon T, Clark AG. Modeling the Manipulation of Natural Populations by the Mutagenic Chain Reaction. Genetics. 201: 425-31. PMID 26232409 DOI: 10.1534/Genetics.115.177592  1
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Search for a Heavy Neutral Particle Decaying to eμ, eτ, or μτ in pp Collisions at sqrt[s]=8  TeV with the ATLAS Detector. Physical Review Letters. 115: 031801. PMID 26230783 DOI: 10.1103/Physrevlett.115.031801  0.72
2015 Brereton MF, Vergari E, Zhang Q, Clark A. Alpha-, Delta- and PP-cells: Are They the Architectural Cornerstones of Islet Structure and Co-ordination? The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 63: 575-91. PMID 26216135 DOI: 10.1369/0022155415583535  0.36
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Constraints on the off-shell Higgs boson signal strength in the high-mass ZZ and WW final states with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 335. PMID 26213488 DOI: 10.1140/Epjc/S10052-015-3542-2  0.72
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Search for New Phenomena in Dijet Angular Distributions in Proton-Proton Collisions at sqrt[s]=8 TeV Measured with the ATLAS Detector. Physical Review Letters. 114: 221802. PMID 26196615 DOI: 10.1103/Physrevlett.114.221802  0.72
2015 Meisel RP, Scott JG, Clark AG. Transcriptome Differences between Alternative Sex Determining Genotypes in the House Fly, Musca domestica. Genome Biology and Evolution. 7: 2051-61. PMID 26142430 DOI: 10.1093/Gbe/Evv128  1
2015 Wang X, Werren JH, Clark AG. Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100871 DOI: 10.1073/Pnas.1510338112  1
2015 Hunter-Zinck H, Clark AG. Aberrant Time to Most Recent Common Ancestor as a Signature of Natural Selection. Molecular Biology and Evolution. PMID 26093129 DOI: 10.1093/Molbev/Msv142  0.44
2015 Farag M, Mabote T, Shoaib A, Zhang J, Nabhan AF, Clark AL, Cleland JG. Hydralazine and nitrates alone or combined for the management of chronic heart failure: A systematic review. International Journal of Cardiology. 196: 61-9. PMID 26073215 DOI: 10.1016/j.ijcard.2015.05.160  0.48
2015 Peters JC, Bhattacharya S, Clark AF, Zode GS. Increased Endoplasmic Reticulum Stress in Human Glaucomatous Trabecular Meshwork Cells and Tissues. Investigative Ophthalmology & Visual Science. 56: 3860-8. PMID 26066753 DOI: 10.1167/iovs.14-16220  0.56
2015 Wang J, Clark A, Swick B. Flaccid pustules and vesicles in a middle-aged woman. Clinical and Experimental Dermatology. PMID 26054043 DOI: 10.1111/ced.12693  0.88
2015 Overby DR, Clark AF. Animal models of glucocorticoid-induced glaucoma. Experimental Eye Research. PMID 26051991 DOI: 10.1016/j.exer.2015.06.002  0.56
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Determination of spin and parity of the Higgs boson in the [Formula: see text] decay channel with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 231. PMID 26041978 DOI: 10.1140/Epjc/S10052-015-3436-3  0.2
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Observation and measurements of the production of prompt and non-prompt [Formula: see text] mesons in association with a [Formula: see text] boson in [Formula: see text] collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 229. PMID 26041977 DOI: 10.1140/Epjc/S10052-015-3406-9  0.48
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of three-jet production cross-sections in [Formula: see text] collisions at 7 [Formula: see text] centre-of-mass energy using the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 228. PMID 26041976 DOI: 10.1140/Epjc/S10052-015-3363-3  0.72
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of the top-quark mass in the fully hadronic decay channel from ATLAS data at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 158. PMID 26041974 DOI: 10.1140/Epjc/S10052-015-3373-1  0.01
2015 Pang IH, Millar JC, Clark AF. Elevation of intraocular pressure in rodents using viral vectors targeting the trabecular meshwork. Experimental Eye Research. PMID 26025608 DOI: 10.1016/j.exer.2015.04.003  0.4
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Combined Measurement of the Higgs Boson Mass in pp Collisions at sqrt[s]=7 and 8 TeV with the ATLAS and CMS Experiments. Physical Review Letters. 114: 191803. PMID 26024162 DOI: 10.1103/Physrevlett.114.191803  0.01
2015 Pellicori P, Kallvikbacka-Bennett A, Dierckx R, Zhang J, Putzu P, Cuthbert J, Boyalla V, Shoaib A, Clark AL, Cleland JG. Prognostic significance of ultrasound-assessed jugular vein distensibility in heart failure. Heart (British Cardiac Society). 101: 1149-58. PMID 26006717 DOI: 10.1136/heartjnl-2015-307558  0.48
2015 Gkountela S, Zhang KX, Shafiq TA, Liao WW, Hargan-Calvopiña J, Chen PY, Clark AT. DNA Demethylation Dynamics in the Human Prenatal Germline. Cell. 161: 1425-36. PMID 26004067 DOI: 10.1016/J.Cell.2015.05.012  1
2015 Ross EA, Smallie T, Ding Q, O'Neil JD, Cunliffe HE, Tang T, Rosner DR, Klevernic I, Morrice NA, Monaco C, Cunningham AF, Buckley CD, Saklatvala J, Dean JL, Clark AR. Dominant Suppression of Inflammation via Targeted Mutation of the mRNA Destabilizing Protein Tristetraprolin. Journal of Immunology (Baltimore, Md. : 1950). 195: 265-76. PMID 26002976 DOI: 10.4049/jimmunol.1402826  0.36
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for production of [Formula: see text] resonances decaying to a lepton, neutrino and jets in [Formula: see text] collisions at [Formula: see text] TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 209. PMID 25995709 DOI: 10.1140/Epjc/S10052-015-3425-6  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for direct pair production of a chargino and a neutralino decaying to the 125 GeV Higgs boson in [Formula: see text] TeV [Formula: see text] collisions with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 208. PMID 25995708 DOI: 10.1140/Epjc/S10052-015-3408-7  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of the production and lepton charge asymmetry of [Formula: see text] bosons in Pb+Pb collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 23. PMID 25983646 DOI: 10.1140/Epjc/S10052-014-3231-6  0.01
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Corrigendum: Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 7296. PMID 25976209 DOI: 10.1038/Ncomms8296  1
2015 Gilliland J, Clark AF, Kobrzynski M, Filler G. Convenience Sampling of Children Presenting to Hospital-Based Outpatient Clinics to Estimate Childhood Obesity Levels in Local Surroundings. American Journal of Public Health. 105: 1332-5. PMID 25973810 DOI: 10.2105/Ajph.2015.302622  0.56
2015 Henn BM, Botigué LR, Bustamante CD, Clark AG, Gravel S. Estimating the mutation load in human genomes. Nature Reviews. Genetics. 16: 333-43. PMID 25963372 DOI: 10.1038/Nrg3931  0.8
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Scalar Charm Quark Pair Production in pp Collisions at sqrt[s]=8  TeV with the ATLAS Detector. Physical Review Letters. 114: 161801. PMID 25955046 DOI: 10.1103/Physrevlett.114.161801  0.01
2015 Ayroles JF, Buchanan SM, O'Leary C, Skutt-Kakaria K, Grenier JK, Clark AG, Hartl DL, de Bivort BL. Behavioral idiosyncrasy reveals genetic control of phenotypic variability. Proceedings of the National Academy of Sciences of the United States of America. 112: 6706-11. PMID 25953335 DOI: 10.1073/Pnas.1503830112  1
2015 Costanzo P, Cleland JG, Pellicori P, Clark AL, Hepburn D, Kilpatrick ES, Perrone-Filardi P, Zhang J, Atkin SL. The obesity paradox in type 2 diabetes mellitus: relationship of body mass index to prognosis: a cohort study. Annals of Internal Medicine. 162: 610-8. PMID 25938991 DOI: 10.7326/M14-1551  0.48
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for [Formula: see text] decays in [Formula: see text] collisions at [Formula: see text] = 8 TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 165. PMID 25937816 DOI: 10.1140/Epjc/S10052-015-3372-2  0.01
2015 Spijker HS, Song H, Ellenbroek JH, Roefs MM, Engelse MA, Bos E, Koster AJ, Rabelink TJ, Hansen BC, Clark A, Carlotti F, de Koning EJ. Loss of β-Cell Identity Occurs in Type 2 Diabetes and Is Associated With Islet Amyloid Deposits. Diabetes. 64: 2928-38. PMID 25918235 DOI: 10.2337/db14-1752  0.48
2015 Connallon T, Clark AG. The distribution of fitness effects in an uncertain world. Evolution; International Journal of Organic Evolution. 69: 1610-8. PMID 25913128 DOI: 10.1111/Evo.12673  0.44
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Measurement of spin correlation in top-antitop quark events and search for top squark pair production in pp collisions at √s=8  TeV using the ATLAS detector. Physical Review Letters. 114: 142001. PMID 25910111 DOI: 10.1103/Physrevlett.114.142001  1
2015 Pellicori P, Joseph AC, Zhang J, Lukaschuk E, Sherwi N, Bourantas CV, Loh H, Clark AL, Cleland JG. The relationship of QRS morphology with cardiac structure and function in patients with heart failure. Clinical Research in Cardiology : Official Journal of the German Cardiac Society. PMID 25903113 DOI: 10.1007/s00392-015-0861-0  0.44
2015 Damy T, Hobkirk J, Walters M, Ciobanu A, Rigby AS, Kallvikbacka-Bennett A, Guellich A, Dubois-Randé JL, Hittinger L, Clark AL, Cleland JG. Development of a Human Model for the Study of Effects of Hypoxia, Exercise and Sildenafil on Cardiac and Vascular Function in Chronic Heart Failure. Journal of Cardiovascular Pharmacology. PMID 25874853 DOI: 10.1097/FJC.0000000000000262  0.48
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Higgs and Z Boson Decays to J/ψγ and ϒ(nS)γ with the ATLAS Detector. Physical Review Letters. 114: 121801. PMID 25860734 DOI: 10.1103/Physrevlett.114.121801  0.72
2015 Morselli M, Pastor WA, Montanini B, Nee K, Ferrari R, Fu K, Bonora G, Rubbi L, Clark AT, Ottonello S, Jacobsen SE, Pellegrini M. In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife. 4: e06205. PMID 25848745 DOI: 10.7554/Elife.06205  0.64
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Performance of the ATLAS muon trigger in pp collisions at [Formula: see text] TeV. The European Physical Journal. C, Particles and Fields. 75: 120. PMID 25838797 DOI: 10.1140/Epjc/S10052-015-3325-9  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for dark matter in events with heavy quarks and missing transverse momentum in [Formula: see text] collisions with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 92. PMID 25838796 DOI: 10.1140/Epjc/S10052-015-3306-Z  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurements of the [Formula: see text] production cross sections in association with jets with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 82. PMID 25838794 DOI: 10.1140/Epjc/S10052-015-3262-7  0.2
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for invisible particles produced in association with single-top-quarks in proton-proton collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 79. PMID 25838793 DOI: 10.1140/Epjc/S10052-014-3233-4  0.72
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for resonant diboson production in the [Formula: see text] final state in [Formula: see text] collisions at [Formula: see text] TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 69. PMID 25838792 DOI: 10.1140/Epjc/S10052-015-3261-8  0.72
2015 Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C, Morrison A, Johnson AD, Bis J, Cupples LA, Psaty BM, ... ... Clark AG, et al. Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions. Plos One. 10: e0121644. PMID 25807536 DOI: 10.1371/Journal.Pone.0121644  1
2015 Chen D, Clark AT. Human germline differentiation charts a new course. The Embo Journal. 34: 975-7. PMID 25787856 DOI: 10.15252/Embj.201591447  1
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Higgs boson pair production in the γγbb[over ¯] final state using pp collision data at sqrt[s]=8  TeV from the ATLAS detector. Physical Review Letters. 114: 081802. PMID 25768755 DOI: 10.1103/Physrevlett.114.081802  0.01
2015 Dierckx R, Cleland JG, Pellicori P, Zhang J, Goode K, Putzu P, Boyalla V, Clark AL. If home telemonitoring reduces mortality in heart failure, is this just due to better guideline-based treatment? Journal of Telemedicine and Telecare. PMID 25766855 DOI: 10.1177/1357633X15574947  0.48
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Measurements of the Nuclear Modification Factor for Jets in Pb+Pb Collisions at √(s)NN]=2.76  TeV with the ATLAS detector. Physical Review Letters. 114: 072302. PMID 25763955 DOI: 10.1103/Physrevlett.114.072302  0.01
2015 Chow CY, Avila FW, Clark AG, Wolfner MF. Induction of excessive endoplasmic reticulum stress in the Drosophila male accessory gland results in infertility. Plos One. 10: e0119386. PMID 25742606 DOI: 10.1371/Journal.Pone.0119386  1
2015 Phillips WA, Clark A, Silverstein SM. On the functions, mechanisms, and malfunctions of intracortical contextual modulation. Neuroscience and Biobehavioral Reviews. 52: 1-20. PMID 25721105 DOI: 10.1016/J.Neubiorev.2015.02.010  1
2015 MacIver DH, Clark AL. The vital role of the right ventricle in the pathogenesis of acute pulmonary edema. The American Journal of Cardiology. 115: 992-1000. PMID 25697920 DOI: 10.1016/j.amjcard.2015.01.026  0.44
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 6312. PMID 25692519 DOI: 10.1038/Ncomms7312  1
2015 Otgaar H, Howe ML, Clark A, Wang J, Merckelbach H. What if you went to the police and accused your uncle of abuse? Misunderstandings concerning the benefits of memory distortion: A commentary on Fernández (2015). Consciousness and Cognition. 33: 286-90. PMID 25681697 DOI: 10.1016/J.Concog.2015.01.015  0.36
2015 Grenier JK, Arguello JR, Moreira MC, Gottipati S, Mohammed J, Hackett SR, Boughton R, Greenberg AJ, Clark AG. Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains. G3 (Bethesda, Md.). 5: 593-603. PMID 25673134 DOI: 10.1534/G3.114.015883  1
2015 Chow CY, Wang X, Riccardi D, Wolfner MF, Clark AG. The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse. Plos Genetics. 11: e1004924. PMID 25651210 DOI: 10.1371/Journal.Pgen.1004924  1
2015 Unckless RL, Larracuente AM, Clark AG. Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis. Genetics. 199: 831-40. PMID 25571899 DOI: 10.1534/Genetics.114.173948  1
2015 Clark AG, Messer PW. Evolutionary genomics. Conundrum of jumbled mosquito genomes. Science (New York, N.Y.). 347: 27-8. PMID 25554775 DOI: 10.1126/Science.Aaa3600  1
2015 Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, ... ... Clark AG, et al. Genomics of ecological adaptation in cactophilic Drosophila. Genome Biology and Evolution. 7: 349-66. PMID 25552534 DOI: 10.1093/Gbe/Evu291  0.44
2015 Reinhart M, Carney T, Clark AG, Fiumera AC. Characterizing male-female interactions using natural genetic variation in Drosophila melanogaster. The Journal of Heredity. 106: 67-79. PMID 25425680 DOI: 10.1093/Jhered/Esu076  0.44
2015 Nashine S, Liu Y, Kim BJ, Clark AF, Pang IH. Role of C/EBP homologous protein in retinal ganglion cell death after ischemia/reperfusion injury. Investigative Ophthalmology & Visual Science. 56: 221-31. PMID 25414185 DOI: 10.1167/Iovs.14-15447  0.56
2015 Ma L, Keinan A, Clark AG. Biological knowledge-driven analysis of epistasis in human GWAS with application to lipid traits. Methods in Molecular Biology (Clifton, N.J.). 1253: 35-45. PMID 25403526 DOI: 10.1007/978-1-4939-2155-3_3  1
2015 Lupyan G, Clark A. Words and the World: Predictive Coding and the Language-Perception-Cognition Interface Current Directions in Psychological Science. 24: 279-284. DOI: 10.1177/0963721415570732  1
2015 Clark A. Radical predictive processing Southern Journal of Philosophy. 53: 3-27. DOI: 10.1111/Sjp.12120  1
2015 Auton A, Abecasis GR, Altshuler DM, Durbin RM, Bentley DR, Chakravarti A, Clark AG, Donnelly P, Eichler EE, Flicek P, Gabriel SB, Gibbs RA, Green ED, Hurles ME, Knoppers BM, et al. A global reference for human genetic variation Nature. 526: 68-74. DOI: 10.1038/nature15393  1
2015 Clark A. What ‘Extended Me’ knows Synthese. DOI: 10.1007/S11229-015-0719-Z  1
2014 Wei KH, Grenier JK, Barbash DA, Clark AG. Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 111: 18793-8. PMID 25512552 DOI: 10.1073/Pnas.1421951112  1
2014 Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE. Human genetics shape the gut microbiome. Cell. 159: 789-99. PMID 25417156 DOI: 10.1016/J.Cell.2014.09.053  0.44
2014 Scott JG, Warren WC, Beukeboom LW, Bopp D, Clark AG, Giers SD, Hediger M, Jones AK, Kasai S, Leichter CA, Li M, Meisel RP, Minx P, Murphy TD, Nelson DR, et al. Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. Genome Biology. 15: 466. PMID 25315136 DOI: 10.1186/S13059-014-0466-3  1
2014 Chen N, Van Hout CV, Gottipati S, Clark AG. Using Mendelian inheritance to improve high-throughput SNP discovery. Genetics. 198: 847-57. PMID 25194160 DOI: 10.1534/Genetics.114.169052  1
2014 Blekhman R, Perry GH, Shahbaz S, Fiehn O, Clark AG, Gilad Y. Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence. Scientific Reports. 4: 5809. PMID 25069065 DOI: 10.1038/Srep05809  1
2014 Singh ND, Koerich LB, Carvalho AB, Clark AG. Positive and purifying selection on the Drosophila Y chromosome. Molecular Biology and Evolution. 31: 2612-23. PMID 24974375 DOI: 10.1093/Molbev/Msu203  1
2014 Pickering MJ, Clark A. Getting ahead: forward models and their place in cognitive architecture. Trends in Cognitive Sciences. 18: 451-6. PMID 24909775 DOI: 10.1016/J.Tics.2014.05.006  1
2014 Lusk CM, Dyson G, Clark AG, Ballantyne CM, Frikke-Schmidt R, Tybjærg-Hansen A, Boerwinkle E, Sing CF. Validated context-dependent associations of coronary heart disease risk with genotype variation in the chromosome 9p21 region: the Atherosclerosis Risk in Communities study. Human Genetics. 133: 1105-16. PMID 24889828 DOI: 10.1007/S00439-014-1451-3  1
2014 Unckless RL, Clark AG. Sex-ratio meiotic drive and interspecific competition. Journal of Evolutionary Biology. 27: 1513-21. PMID 24835887 DOI: 10.1111/Jeb.12411  1
2014 Connallon T, Clark AG. Balancing selection in species with separate sexes: insights from Fisher's geometric model. Genetics. 197: 991-1006. PMID 24812306 DOI: 10.1534/Genetics.114.165605  1
2014 Clark AG. Genetics: The vital Y chromosome. Nature. 508: 463-5. PMID 24759407 DOI: 10.1038/508463A  1
2014 Wei KH, Clark AG, Barbash DA. Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans. Molecular Biology and Evolution. 31: 1767-78. PMID 24723419 DOI: 10.1093/Molbev/Msu127  1
2014 Wang X, Clark AG. Using next-generation RNA sequencing to identify imprinted genes. Heredity. 113: 156-66. PMID 24619182 DOI: 10.1038/Hdy.2014.18  1
2014 Douglas KC, Wang X, Jasti M, Wolff A, VandeBerg JL, Clark AG, Samollow PB. Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. Bmc Genomics. 15: 89. PMID 24484454 DOI: 10.1186/1471-2164-15-89  1
2014 Bhaskar A, Clark AG, Song YS. Distortion of genealogical properties when the sample is very large. Proceedings of the National Academy of Sciences of the United States of America. 111: 2385-90. PMID 24469801 DOI: 10.1073/Pnas.1322709111  1
2014 Spencer HG, Clark AG. Non-conflict theories for the evolution of genomic imprinting. Heredity. 113: 112-8. PMID 24398886 DOI: 10.1038/Hdy.2013.129  1
2014 Larracuente AM, Clark AG. Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura. Molecular Biology and Evolution. 31: 846-56. PMID 24390701 DOI: 10.1093/Molbev/Msu002  1
2014 Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG, Keinan A. Neutral genomic regions refine models of recent rapid human population growth. Proceedings of the National Academy of Sciences of the United States of America. 111: 757-62. PMID 24379384 DOI: 10.1073/Pnas.1310398110  1
2014 Connallon T, Clark AG. Evolutionary inevitability of sexual antagonism. Proceedings. Biological Sciences / the Royal Society. 281: 20132123. PMID 24335980 DOI: 10.1098/Rspb.2013.2123  1
2014 Wang X, Douglas KC, Vandeberg JL, Clark AG, Samollow PB. Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica. Genome Research. 24: 70-83. PMID 24065774 DOI: 10.1101/Gr.161919.113  1
2013 Sackton TB, Werren JH, Clark AG. Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes. Plos One. 8: e83984. PMID 24386321 DOI: 10.1371/Journal.Pone.0083984  1
2013 Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ, Green ED, Clark AG, Seixas S. Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity. Genome Biology and Evolution. 5: 2512-23. PMID 24356879 DOI: 10.1093/Gbe/Evu029  1
2013 Corbett-Detig RB, Zhou J, Clark AG, Hartl DL, Ayroles JF. Genetic incompatibilities are widespread within species. Nature. 504: 135-7. PMID 24196712 DOI: 10.1038/Nature12678  1
2013 Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH. Function and evolution of DNA methylation in Nasonia vitripennis. Plos Genetics. 9: e1003872. PMID 24130511 DOI: 10.1371/Journal.Pgen.1003872  1
2013 Early AM, Clark AG. Monophyly of Wolbachia pipientis genomes within Drosophila melanogaster: geographic structuring, titre variation and host effects across five populations. Molecular Ecology. 22: 5765-78. PMID 24118111 DOI: 10.1111/Mec.12530  1
2013 Chakravarti A, Clark AG, Mootha VK. Distilling pathophysiology from complex disease genetics. Cell. 155: 21-6. PMID 24074858 DOI: 10.1016/J.Cell.2013.09.001  1
2013 Scheitz CJ, Guo Y, Early AM, Harshman LG, Clark AG. Heritability and inter-population differences in lipid profiles of Drosophila melanogaster. Plos One. 8: e72726. PMID 24013349 DOI: 10.1371/Journal.Pone.0072726  1
2013 Gazave E, Chang D, Clark AG, Keinan A. Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect. Genetics. 195: 969-78. PMID 23979573 DOI: 10.1534/Genetics.113.153973  1
2013 Carvalho AB, Clark AG. Efficient identification of Y chromosome sequences in the human and Drosophila genomes. Genome Research. 23: 1894-907. PMID 23921660 DOI: 10.1101/Gr.156034.113  1
2013 Clark A. Are we predictive engines? Perils, prospects, and the puzzle of the porous perceiver. The Behavioral and Brain Sciences. 36: 233-53. PMID 23814868 DOI: 10.1017/S0140525X12002440  1
2013 Guo Y, Wei X, Das J, Grimson A, Lipkin SM, Clark AG, Yu H. Dissecting disease inheritance modes in a three-dimensional protein network challenges the "guilt-by-association" principle. American Journal of Human Genetics. 93: 78-89. PMID 23791107 DOI: 10.1016/J.Ajhg.2013.05.022  1
2013 Wang X, Miller DC, Harman R, Antczak DF, Clark AG. Paternally expressed genes predominate in the placenta. Proceedings of the National Academy of Sciences of the United States of America. 110: 10705-10. PMID 23754418 DOI: 10.1073/Pnas.1308998110  1
2013 Clark A. The many faces of precision (Replies to commentaries on "Whatever next? Neural prediction, situated agents, and the future of cognitive science"). Frontiers in Psychology. 4: 270. PMID 23734133 DOI: 10.3389/Fpsyg.2013.00270  1
2013 Weick JP, Held DL, Bonadurer GF, Doers ME, Liu Y, Maguire C, Clark A, Knackert JA, Molinarolo K, Musser M, Yao L, Yin Y, Lu J, Zhang X, Zhang SC, et al. Deficits in human trisomy 21 iPSCs and neurons. Proceedings of the National Academy of Sciences of the United States of America. 110: 9962-7. PMID 23716668 DOI: 10.1073/Pnas.1216575110  0.68
2013 Chow CY, Wolfner MF, Clark AG. Using natural variation in Drosophila to discover previously unknown endoplasmic reticulum stress genes. Proceedings of the National Academy of Sciences of the United States of America. 110: 9013-8. PMID 23667151 DOI: 10.1073/Pnas.1307125110  1
2013 Clark A. Whatever next? Predictive brains, situated agents, and the future of cognitive science. The Behavioral and Brain Sciences. 36: 181-204. PMID 23663408 DOI: 10.1017/S0140525X12000477  1
2013 Connallon T, Clark AG. Sex-differential selection and the evolution of X inactivation strategies. Plos Genetics. 9: e1003440. PMID 23637618 DOI: 10.1371/Journal.Pgen.1003440  1
2013 Quintana-Murci L, Clark AG. Population genetic tools for dissecting innate immunity in humans. Nature Reviews. Immunology. 13: 280-93. PMID 23470320 DOI: 10.1038/Nri3421  1
2013 Ma L, Clark AG, Keinan A. Gene-based testing of interactions in association studies of quantitative traits. Plos Genetics. 9: e1003321. PMID 23468652 DOI: 10.1371/Journal.Pgen.1003321  1
2013 Connallon T, Clark AG. Antagonistic versus nonantagonistic models of balancing selection: characterizing the relative timescales and hitchhiking effects of partial selective sweeps. Evolution; International Journal of Organic Evolution. 67: 908-17. PMID 23461340 DOI: 10.1111/J.1558-5646.2012.01800.X  1
2013 Singh ND, Stone EA, Aquadro CF, Clark AG. Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome. Genetics. 194: 375-87. PMID 23410829 DOI: 10.1534/Genetics.112.146746  1
2013 Ferreira Z, Seixas S, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Swanson WJ, Clark AG, Green ED, Hurle B. Reproduction and immunity-driven natural selection in the human WFDC locus. Molecular Biology and Evolution. 30: 938-50. PMID 23292442 DOI: 10.1093/Molbev/Mss329  1
2013 Zhang R, Clark AG, Fiumera AC. Natural genetic variation in male reproductive genes contributes to nontransitivity of sperm competitive ability in Drosophila melanogaster. Molecular Ecology. 22: 1400-15. PMID 23171073 DOI: 10.1111/Mec.12113  1
2013 Chow CY, Wolfner MF, Clark AG. Large neurological component to genetic differences underlying biased sperm use in Drosophila. Genetics. 193: 177-85. PMID 23105014 DOI: 10.1534/Genetics.112.146357  1
2013 Singh ND, Jensen JD, Clark AG, Aquadro CF. Inferences of demography and selection in an African population of Drosophila melanogaster. Genetics. 193: 215-28. PMID 23105013 DOI: 10.1534/Genetics.112.145318  1
2013 Larracuente AM, Clark AG. Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster. Genetics. 193: 201-14. PMID 23086221 DOI: 10.1534/Genetics.112.146167  1
2013 Clark A. Expecting the world: Perception, prediction, and the origins of human knowledge Journal of Philosophy. 110: 469-496.  1
2012 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, ... ... Clark A, et al. Search for lepton flavour violation in the eμ continuum with the ATLAS detector in [Formula: see text]pp collisions at the LHC. The European Physical Journal. C, Particles and Fields. 72: 2040. PMID 25814838 DOI: 10.1140/Epjc/S10052-012-2040-Z  0.01
2012 Cardoso-Moreira M, Arguello JR, Clark AG. Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing. Genome Biology. 13: R119. PMID 23259534 DOI: 10.1186/Gb-2012-13-12-R119  1
2012 Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. An integrated map of genetic variation from 1,092 human genomes. Nature. 491: 56-65. PMID 23128226 DOI: 10.1038/Nature11632  1
2012 Meisel RP, Malone JH, Clark AG. Faster-X evolution of gene expression in Drosophila. Plos Genetics. 8: e1003013. PMID 23071459 DOI: 10.1371/Journal.Pgen.1003013  1
2012 Gunnar MR, Wenner JA, Thomas KM, Glatt CE, McKenna MC, Clark AG. The brain-derived neurotrophic factor Val66Met polymorphism moderates early deprivation effects on attention problems. Development and Psychopathology. 24: 1215-23. PMID 23062292 DOI: 10.1017/S095457941200065X  1
2012 Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, ... ... Clark AG, et al. Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. American Journal of Human Genetics. 91: 660-71. PMID 23040495 DOI: 10.1016/J.Ajhg.2012.08.025  1
2012 Lang M, Murat S, Clark AG, Gouppil G, Blais C, Matzkin LM, Guittard E, Yoshiyama-Yanagawa T, Kataoka H, Niwa R, Lafont R, Dauphin-Villemant C, Orgogozo V. Mutations in the neverland gene turned Drosophila pachea into an obligate specialist species. Science (New York, N.Y.). 337: 1658-61. PMID 23019649 DOI: 10.1126/Science.1224829  1
2012 Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A. Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. Plos Genetics. 8: e1002714. PMID 22654671 DOI: 10.1371/Journal.Pgen.1002714  1
2012 Wernimont SM, Clark AG, Stover PJ, Wells MT, Litonjua AA, Weiss ST, Gaziano JM, Vokonas PS, Tucker KL, Cassano PA. Folate network genetic variation predicts cardiovascular disease risk in non-Hispanic white males. The Journal of Nutrition. 142: 1272-9. PMID 22649255 DOI: 10.3945/Jn.111.157180  1
2012 Wang X, Miller DC, Clark AG, Antczak DF. Random X inactivation in the mule and horse placenta. Genome Research. 22: 1855-63. PMID 22645258 DOI: 10.1101/Gr.138487.112  1
2012 Friston K, Thornton C, Clark A. Free-energy minimization and the dark-room problem. Frontiers in Psychology. 3: 130. PMID 22586414 DOI: 10.3389/Fpsyg.2012.00130  1
2012 Chen N, Bellott DW, Page DC, Clark AG. Identification of avian W-linked contigs by short-read sequencing. Bmc Genomics. 13: 183. PMID 22583744 DOI: 10.1186/1471-2164-13-183  1
2012 Keinan A, Clark AG. Recent explosive human population growth has resulted in an excess of rare genetic variants. Science (New York, N.Y.). 336: 740-3. PMID 22582263 DOI: 10.1126/Science.1217283  1
2012 Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC. Genome sequencing reveals complex speciation in the Drosophila simulans clade. Genome Research. 22: 1499-511. PMID 22534282 DOI: 10.1101/Gr.130922.111  1
2012 Meisel RP, Malone JH, Clark AG. Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Research. 22: 1255-65. PMID 22499666 DOI: 10.1101/Gr.132100.111  1
2012 Lu J, Clark AG. Impact of microRNA regulation on variation in human gene expression. Genome Research. 22: 1243-54. PMID 22456605 DOI: 10.1101/Gr.132514.111  1
2012 Bentley AR, Kritchevsky SB, Harris TB, Newman AB, Bauer DC, Meibohm B, Clark AG, Cassano PA. Genetic variation in antioxidant enzymes and lung function. Free Radical Biology & Medicine. 52: 1577-83. PMID 22387199 DOI: 10.1016/J.Freeradbiomed.2012.02.025  1
2012 Connallon T, Singh ND, Clark AG. Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution. Molecular Biology and Evolution. 29: 1933-42. PMID 22319138 DOI: 10.1093/Molbev/Mss057  1
2012 Connallon T, Clark AG. A general population genetic framework for antagonistic selection that accounts for demography and recurrent mutation. Genetics. 190: 1477-89. PMID 22298707 DOI: 10.1534/Genetics.111.137117  1
2012 Clark A. Dreaming the whole cat: Generative models, predictive processing, and the enactivist conception of perceptual experience Mind. 121: 753-771. DOI: 10.1093/Mind/Fzs106  1
2012 Clark A, Pritchard D, Vaesen K. Extended cognition and epistemology Philosophical Explorations. 15: 87-90. DOI: 10.1080/13869795.2012.679294  1
2012 Clark A, Chalmers DJ. The extended mind The Extended Mind. 27-42.  1
2012 Clark A. Coupling, constitution, the cognitive kind: A reply to Adams and Aizawa The Extended Mind. 81-99.  1
2012 Clark A. Memento's revenge: The extended mind, extended The Extended Mind. 43-66.  1
2012 Clark A. Connectionism, moral cognition and collaborative problem solving The Arts and the Legal Academy: Beyond Text in Legal Education. 17-35.  1
2012 Clark A, Chalmers DJ. The extended mind | Rozšírená mysel Filozofia. 67: 230-242.  1
2012 Ward R, Clark A, Hargreaves M. What does 'neighbourhood' mean for carers of people with dementia? Journal of Dementia Care. 20: 33-36.  1
2011 Greenberg AJ, Hackett SR, Harshman LG, Clark AG. Environmental and genetic perturbations reveal different networks of metabolic regulation. Molecular Systems Biology. 7: 563. PMID 22186737 DOI: 10.1038/Msb.2011.96  1
2011 Wernimont SM, Clark AG, Stover PJ, Wells MT, Litonjua AA, Weiss ST, Gaziano JM, Tucker KL, Baccarelli A, Schwartz J, Bollati V, Cassano PA. Folate network genetic variation, plasma homocysteine, and global genomic methylation content: a genetic association study. Bmc Medical Genetics. 12: 150. PMID 22103680 DOI: 10.1186/1471-2350-12-150  1
2011 Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. Plos Genetics. 7: e1002340. PMID 22072977 DOI: 10.1371/Journal.Pgen.1002340  1
2011 Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, Chen Y, Challis D, Clarke L, Ball EV, Cibulskis K, ... ... Clark AG, et al. The functional spectrum of low-frequency coding variation. Genome Biology. 12: R84. PMID 21917140 DOI: 10.1186/Gb-2011-12-9-R84  1
2011 Giardina TJ, Beavis A, Clark AG, Fiumera AC. Female influence on pre- and post-copulatory sexual selection and its genetic basis in Drosophila melanogaster. Molecular Ecology. 20: 4098-108. PMID 21902747 DOI: 10.1111/J.1365-294X.2011.05253.X  1
2011 Wang Y, Mehta G, Mayani R, Lu J, Souaiaia T, Chen Y, Clark A, Yoon HJ, Wan L, Evgrafov OV, Knowles JA, Deelman E, Chen T. RseqFlow: workflows for RNA-Seq data analysis. Bioinformatics (Oxford, England). 27: 2598-600. PMID 21795323 DOI: 10.1093/Bioinformatics/Btr441  0.4
2011 Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A. Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing. Nature Genetics. 43: 741-3. PMID 21775991 DOI: 10.1038/Ng.877  1
2011 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America. 108: 11983-8. PMID 21730125 DOI: 10.1073/Pnas.1019276108  1
2011 Wang X, Soloway PD, Clark AG. A survey for novel imprinted genes in the mouse placenta by mRNA-seq Genetics. 189: 109-122. PMID 21705755 DOI: 10.1534/Genetics.111.130088  1
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Clark A, et al. Measurement of dijet azimuthal decorrelations in pp collisions at sqrt(s)=7  TeV. Physical Review Letters. 106: 172002. PMID 21635030 DOI: 10.1103/Physrevlett.106.172002  0.01
2011 Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee C. Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection. Genome Biology. 12: R52. PMID 21627829 DOI: 10.1186/Gb-2011-12-5-R52  1
2011 Im KM, Kirchhoff T, Wang X, Green T, Chow CY, Vijai J, Korn J, Gaudet MM, Fredericksen Z, Shane Pankratz V, Guiducci C, Crenshaw A, McGuffog L, Kartsonaki C, Morrison J, ... ... Clark AG, et al. Haplotype structure in Ashkenazi Jewish BRCA1 and BRCA2 mutation carriers. Human Genetics. 130: 685-99. PMID 21597964 DOI: 10.1007/S00439-011-1003-Z  0.68
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Clark A, et al. Search for supersymmetry using final states with one lepton, jets, and missing transverse momentum with the ATLAS detector in √s=7 TeV pp collisions. Physical Review Letters. 106: 131802. PMID 21517374 DOI: 10.1103/Physrevlett.106.131802  0.01
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Search for diphoton events with large missing transverse energy in 7 TeV proton-proton collisions with the ATLAS detector. Physical Review Letters. 106: 121803. PMID 21517301 DOI: 10.1103/Physrevlett.106.121803  0.01
2011 Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proceedings of the National Academy of Sciences of the United States of America. 108: 7472-7. PMID 21482769 DOI: 10.1073/Pnas.1103457108  1
2011 Connallon T, Clark AG. The resolution of sexual antagonism by gene duplication Genetics. 187: 919-937. PMID 21220356 DOI: 10.1534/Genetics.110.123729  1
2011 Lohmueller KE, Bustamante CD, Clark AG. Detecting directional selection in the presence of recent admixture in African-Americans. Genetics. 187: 823-35. PMID 21196524 DOI: 10.1534/Genetics.110.122739  1
2011 Connallon T, Clark AG. Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila Genome Biology and Evolution. 3: 151-155. DOI: 10.1093/Gbe/Evr004  1
2010 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Observation of a centrality-dependent dijet asymmetry in lead-lead collisions at sqrt[S(NN)] =2.76 TeV with the ATLAS detector at the LHC. Physical Review Letters. 105: 252303. PMID 21231581 DOI: 10.1103/Physrevlett.105.252303  0.01
2010 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Search for new particles in two-jet final states in 7 TeV proton-proton collisions with the ATLAS detector at the LHC. Physical Review Letters. 105: 161801. PMID 21230962 DOI: 10.1103/Physrevlett.105.161801  0.01
2010 Coventry A, Bull-Otterson LM, Liu X, Clark AG, Maxwell TJ, Crosby J, Hixson JE, Rea TJ, Muzny DM, Lewis LR, Wheeler DA, Sabo A, Lusk C, Weiss KG, Akbar H, et al. Deep resequencing reveals excess rare recent variants consistent with explosive population growth. Nature Communications. 1: 131. PMID 21119644 DOI: 10.1038/Ncomms1130  1
2010 Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA. A map of human genome variation from population-scale sequencing. Nature. 467: 1061-73. PMID 20981092 DOI: 10.1038/Nature09534  1
2010 Andrés AM, Dennis MY, Kretzschmar WW, Cannons JL, Lee-Lin SQ, Hurle B, Schwartzberg PL, Williamson SH, Bustamante CD, Nielsen R, Clark AG, Green ED. Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation. Plos Genetics. 6: e1001157. PMID 20976248 DOI: 10.1371/Journal.Pgen.1001157  1
2010 Chow CY, Wolfner MF, Clark AG. The genetic basis for male x female interactions underlying variation in reproductive phenotypes of Drosophila. Genetics. 186: 1355-65. PMID 20876561 DOI: 10.1534/Genetics.110.123174  1
2010 Connallon T, Clark AG. Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression Evolution. 64: 3417-3442. PMID 20874735 DOI: 10.1111/J.1558-5646.2010.01136.X  1
2010 Clark AG, Wang X, Matise T. Contrasting methods of quantifying fine structure of human recombination Annual Review of Genomics and Human Genetics. 11: 45-64. PMID 20690817 DOI: 10.1146/Annurev-Genom-082908-150031  1
2010 Wang X, Soloway PD, Clark AG. Paternally biased X inactivation in mouse neonatal brain Genome Biology. R79. PMID 20663224 DOI: 10.1186/Gb-2010-11-7-R79  1
2010 Hunter-Zinck H, Musharoff S, Salit J, Al-Ali KA, Chouchane L, Gohar A, Matthews R, Butler MW, Fuller J, Hackett NR, Crystal RG, Clark AG. Population genetic structure of the people of Qatar. American Journal of Human Genetics. 87: 17-25. PMID 20579625 DOI: 10.1016/J.Ajhg.2010.05.018  1
2010 Lu JQ, Joseph JT, Nash RA, Storek J, Stevens AM, Metz LM, Clark AW, Johnson ES, Yong VW. Neuroinflammation and demyelination in multiple sclerosis after allogeneic hematopoietic stem cell transplantation. Archives of Neurology. 67: 716-22. PMID 20558390 DOI: 10.1001/Archneurol.2010.117  0.44
2010 Connallon T, Clark AG. Gene duplication, gene conversion and the evolution of the Y chromosome Genetics. 186: 277-286. PMID 20551442 DOI: 10.1534/Genetics.110.116756  1
2010 Hill-Burns EM, Clark AG. Functional regulatory divergence of the innate immune system in interspecific Drosophila hybrids. Molecular Biology and Evolution. 27: 2596-605. PMID 20551040 DOI: 10.1093/Molbev/Msq146  1
2010 Royal CD, Novembre J, Fullerton SM, Goldstein DB, Long JC, Bamshad MJ, Clark AG. Inferring genetic ancestry: opportunities, challenges, and implications. American Journal of Human Genetics. 86: 661-73. PMID 20466090 DOI: 10.1016/J.Ajhg.2010.03.011  1
2010 Lohmueller KE, Bustamante CD, Clark AG. The effect of recent admixture on inference of ancient human population history. Genetics. 185: 611-22. PMID 20382834 DOI: 10.1534/Genetics.109.113761  1
2010 Greenberg AJ, Hackett SR, Harshman LG, Clark AG. A hierarchical Bayesian model for a novel sparse partial diallel crossing design. Genetics. 185: 361-73. PMID 20157001 DOI: 10.1534/Genetics.110.115055  1
2010 Larracuente AM, Noor MA, Clark AG. Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura. Molecular Biology and Evolution. 27: 1612-20. PMID 20147437 DOI: 10.1093/Molbev/Msq045  1
2010 Sackton TB, Lazzaro BP, Clark AG. Genotype and gene expression associations with immune function in Drosophila. Plos Genetics. 6: e1000797. PMID 20066029 DOI: 10.1371/Journal.Pgen.1000797  1
2010 Lu J, Clark AG. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Research. 20: 212-27. PMID 19948818 DOI: 10.1101/Gr.095406.109  1
2010 Antczak DF, Wang X, Miller DC, Clark AG. Genomic Imprinting in Invasive Trophoblast in Mammalian Interspecies Hybrids. Biology of Reproduction. 83: 102-102. DOI: 10.1093/Biolreprod/83.S1.102  1
2010 Clark AG. Formal genetics of humans: Multifactorial inheritance and common diseases Vogel and Motulsky's Human Genetics: Problems and Approaches (Fourth Edition). 263-286. DOI: 10.1007/978-3-540-37654-5_9  1
2009 Turetz ML, O'Connor TP, Tilley AE, Strulovici-Barel Y, Salit J, Dang D, Teater M, Mezey J, Clark AG, Crystal RG. Trachea epithelium as a "canary" for cigarette smoking-induced biologic phenotype of the small airway epithelium. Clinical and Translational Science. 2: 260-72. PMID 20443905 DOI: 10.1111/J.1752-8062.2009.00129.X  1
2009 Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, Marth GT, Hartl DL, Clark AG. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biology and Evolution. 1: 449-65. PMID 20333214 DOI: 10.1093/Gbe/Evp048  0.96
2009 Hill-Burns EM, Clark AG. X-linked variation in immune response in Drosophila melanogaster. Genetics. 183: 1477-91. PMID 19822734 DOI: 10.1534/Genetics.108.093971  1
2009 Dermitzakis ET, Clark AG. Life after GWA studies Science. 326: 239-240. PMID 19815762 DOI: 10.1126/Science.1182009  1
2009 Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, ... ... Clark AG, et al. Finding the missing heritability of complex diseases. Nature. 461: 747-53. PMID 19812666 DOI: 10.1038/Nature08494  1
2009 Andrés AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, Nielsen R. Targets of balancing selection in the human genome. Molecular Biology and Evolution. 26: 2755-64. PMID 19713326 DOI: 10.1093/Molbev/Msp190  1
2009 Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, Clark AG. Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence. Plos Genetics. 5: e1000592. PMID 19662163 DOI: 10.1371/Journal.Pgen.1000592  1
2009 Singh ND, Aquadro CF, Clark AG. Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster. Journal of Molecular Evolution. 69: 42-53. PMID 19504037 DOI: 10.1007/S00239-009-9250-5  1
2009 Sackton TB, Clark AG. Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. Bmc Genomics. 10: 259. PMID 19500410 DOI: 10.1186/1471-2164-10-259  1
2009 Castellano S, Andrés AM, Bosch E, Bayes M, Guigó R, Clark AG. Low exchangeability of selenocysteine, the 21st amino acid, in vertebrate proteins. Molecular Biology and Evolution. 26: 2031-40. PMID 19487332 DOI: 10.1093/Molbev/Msp109  1
2009 Bernardo Carvalho A, Koerich LB, Clark AG. Origin and evolution of Y chromosomes: Drosophila tales Trends in Genetics. 25: 270-277. PMID 19443075 DOI: 10.1016/J.Tig.2009.04.002  1
2009 Singh ND, Arndt PF, Clark AG, Aquadro CF. Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila. Molecular Biology and Evolution. 26: 1591-605. PMID 19351792 DOI: 10.1093/Molbev/Msp071  1
2009 Scott JG, Liu N, Kristensen M, Clark AG. A Case for Sequencing the Genome of Musca domestica (Diptera: Muscidae) Journal of Medical Entomology. 46: 175-182. PMID 19351068 DOI: 10.1603/033.046.0202  0.52
2009 Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, Clark AG. Darwinian and demographic forces affecting human protein coding genes. Genome Research. 19: 838-49. PMID 19279335 DOI: 10.1101/Gr.088336.108  1
2009 Lohmueller KE, Bustamante CD, Clark AG. Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data. Genetics. 182: 217-31. PMID 19255370 DOI: 10.1534/Genetics.108.099275  1
2009 McGraw LA, Gibson G, Clark AG, Wolfner MF. Strain-dependent differences in several reproductive traits are not accompanied by early postmating transcriptome changes in female Drosophila melanogaster. Genetics. 181: 1273-80. PMID 19237688 DOI: 10.1534/Genetics.108.099622  1
2009 Lu JQ, Khalil M, Hu W, Sutherland GR, Clark AW. Tumor-to-tumor metastasis: esophageal carcinoma metastatic to an intracranial paraganglioma. Journal of Neurosurgery. 110: 744-8. PMID 19072308 DOI: 10.3171/2008.9.Jns08397  0.44
2009 Singh ND, Larracuente AM, Sackton TB, Clark AG. Comparative genomics on the drosophila phylogenetic tree Annual Review of Ecology, Evolution, and Systematics. 40: 459-480. DOI: 10.1146/Annurev.Ecolsys.110308.120214  1
2008 Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG. Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain Plos One. 3. PMID 19052635 DOI: 10.1371/Journal.Pone.0003839  1
2008 Koerich LB, Wang X, Clark AG, Carvalho AB. Low conservation of gene content in the Drosophila Y chromosome. Nature. 456: 949-51. PMID 19011613 DOI: 10.1038/Nature07463  1
2008 Greenberg AJ, Stockwell SR, Clark AG. Evolutionary constraint and adaptation in the metabolic network of Drosophila Molecular Biology and Evolution. 25: 2537-2546. PMID 18799713 DOI: 10.1093/Molbev/Msn205  1
2008 McGraw LA, Clark AG, Wolfner MF. Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins. Genetics. 179: 1395-408. PMID 18562649 DOI: 10.1534/Genetics.108.086934  1
2008 Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR, White TJ, Nielsen R, Clark AG, Bustamante CD. Assessing the evolutionary impact of amino acid mutations in the human genome. Plos Genetics. 4: e1000083. PMID 18516229 DOI: 10.1371/Journal.Pgen.1000083  1
2008 Fallah A, Grochmal J, Lu JQ, DiFrancesco LM, Khalil M, Clark AW, Midha R. Nodular fasciitis presenting in the obturator nerve and gracilis muscle. The Canadian Journal of Neurological Sciences. Le Journal Canadien Des Sciences Neurologiques. 35: 111-4. PMID 18380289 DOI: 10.1017/S0317167100007678  0.44
2008 McKean KA, Yourth CP, Lazzaro BP, Clark AG. The evolutionary costs of immunological maintenance and deployment. Bmc Evolutionary Biology. 8: 76. PMID 18315877 DOI: 10.1186/1471-2148-8-76  1
2008 Lohmueller KE, Indap AR, Schmidt S, Boyko AR, Hernandez RD, Hubisz MJ, Sninsky JJ, White TJ, Sunyaev SR, Nielsen R, Clark AG, Bustamante CD. Proportionally more deleterious genetic variation in European than in African populations. Nature. 451: 994-7. PMID 18288194 DOI: 10.1038/Nature06611  1
2008 Wittkopp PJ, Haerum BK, Clark AG. Regulatory changes underlying expression differences within and between Drosophila species. Nature Genetics. 40: 346-350. PMID 18278046 DOI: 10.1038/Ng.77  0.52
2008 Olshen AB, Gold B, Lohmueller KE, Struewing JP, Satagopan J, Stefanov SA, Eskin E, Kirchhoff T, Lautenberger JA, Klein RJ, Friedman E, Norton L, Ellis NA, Viale A, Lee CS, ... ... Clark AG, et al. Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping. Bmc Genetics. 9: 14. PMID 18251999 DOI: 10.1186/1471-2156-9-14  1
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/J.Tig.2007.12.001  1
2008 Wittkopp PJ, Haerum BK, Clark AG. Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster Genetics. 178: 1831-1835. PMID 18245838 DOI: 10.1534/Genetics.107.082032  0.52
2008 Singh ND, Larracuente AM, Clark AG. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution. 25: 454-67. PMID 18083702 DOI: 10.1093/Molbev/Msm275  1
2008 Pollard KS, Serre D, Wang X, Tao H, Grundberg E, Hudson TJ, Clark AG, Frazer K. A genome-wide approach to identifying novel-imprinted genes Human Genetics. 122: 625-634. PMID 17955261 DOI: 10.1007/S00439-007-0440-1  1
2007 Ma X, Liu Y, Gowen BB, Graviss EA, Clark AG, Musser JM. Full-exon resequencing reveals toll-like receptor variants contribute to human susceptibility to tuberculosis disease. Plos One. 2: e1318. PMID 18091991 DOI: 10.1371/Journal.Pone.0001318  1
2007 Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Hodges E, ... ... Clark AG, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 450: 219-32. PMID 17994088 DOI: 10.1038/Nature06340  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  1
2007 Sackton TB, Lazzaro BP, Schlenke TA, Evans JD, Hultmark D, Clark AG. Dynamic evolution of the innate immune system in Drosophila. Nature Genetics. 39: 1461-8. PMID 17987029 DOI: 10.1038/Ng.2007.60  1
2007 Schlenke TA, Morales J, Govind S, Clark AG. Contrasting infection strategies in generalist and specialist wasp parasitoids of Drosophila melanogaster. Plos Pathogens. 3: 1486-501. PMID 17967061 DOI: 10.1371/Journal.Ppat.0030158  1
2007 Andrés AM, Clark AG, Shimmin L, Boerwinkle E, Sing CF, Hixson JE. Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genetic Epidemiology. 31: 659-71. PMID 17922479 DOI: 10.1002/Gepi.20185  1
2007 McGraw LA, Fiumera AC, Ramakrishnan M, Madhavarapu S, Clark AG, Wolfner MF. Larval rearing environment affects several post-copulatory traits in Drosophila melanogaster. Biology Letters. 3: 607-10. PMID 17711815 DOI: 10.1098/Rsbl.2007.0334  1
2007 Clark A. Re-inventing ourselves: the plasticity of embodiment, sensing, and mind. The Journal of Medicine and Philosophy. 32: 263-82. PMID 17613705 DOI: 10.1080/03605310701397024  1
2007 Huntley MA, Clark AG. Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species. Molecular Biology and Evolution. 24: 2598-609. PMID 17602168 DOI: 10.1093/Molbev/Msm129  1
2007 Clark AG, Li J. Conjuring SNPs to detect associations. Nature Genetics. 39: 815-816. PMID 17597769 DOI: 10.1038/Ng0707-815  1
2007 Sainudiin R, Clark AG, Durrett RT. Simple models of genomic variation in human SNP density. Bmc Genomics. 8: 146. PMID 17553150 DOI: 10.1186/1471-2164-8-146  1
2007 Williamson SH, Hubisz MJ, Clark AG, Payseur BA, Bustamante CD, Nielsen R. Localizing recent adaptive evolution in the human genome. Plos Genetics. 3: e90. PMID 17542651 DOI: 10.1371/Journal.Pgen.0030090  1
2007 Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL. Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters. Molecular and Cellular Biology. 27: 5090-104. PMID 17515612 DOI: 10.1128/Mcb.00083-07  1
2007 Fiumera AC, Dumont BL, Clark AG. Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster. Genetics. 176: 1245-60. PMID 17435238 DOI: 10.1534/Genetics.106.064915  1
2006 Whitfield CW, Behura SK, Berlocher SH, Clark AG, Johnston JS, Sheppard WS, Smith DR, Suarez AV, Weaver D, Tsutsui ND. Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera. Science (New York, N.Y.). 314: 642-5. PMID 17068261 DOI: 10.1126/Science.1132772  1
2006 Montooth KL, Siebenthall KT, Clark AG. Membrane lipid physiology and toxin catabolism underlie ethanol and acetic acid tolerance in Drosophila melanogaster. The Journal of Experimental Biology. 209: 3837-50. PMID 16985200 DOI: 10.1242/Jeb.02448  1
2006 Spencer HG, Clark AG. A chip off the old block: a model for the evolution of genomic imprinting via selection for parental similarity. Genetics. 174: 931-5. PMID 16951072 DOI: 10.1534/Genetics.106.060475  1
2006 Lazzaro BP, Sackton TB, Clark AG. Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria. Genetics. 174: 1539-54. PMID 16888344 DOI: 10.1534/Genetics.105.054593  1
2006 Brown CM, Rea TJ, Hamon SC, Hixson JE, Boerwinkle E, Clark AG, Sing CF. The contribution of individual and pairwise combinations of SNPs in the APOA1 and APOC3 genes to interindividual HDL-C variability Journal of Molecular Medicine. 84: 561-572. PMID 16705465 DOI: 10.1007/S00109-005-0037-X  1
2006 Wittkopp PJ, Haerum BK, Clark AG. Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting Genetics. 173: 1817-1821. PMID 16702434 DOI: 10.1534/Genetics.105.054684  0.52
2006 Fiumera AC, Dumont BL, Clark AG. Natural variation in male-induced 'cost-of-mating' and allele-specific association with male reproductive genes in Drosophila melanogaster. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 355-61. PMID 16612893 DOI: 10.1098/Rstb.2005.1791  1
2006 Bachtrog D, Thornton K, Clark A, Andolfatto P. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution; International Journal of Organic Evolution. 60: 292-302. PMID 16610321 DOI: 10.1111/J.0014-3820.2006.Tb01107.X  1
2006 Wilson GM, Flibotte S, Missirlis PI, Marra MA, Jones S, Thornton K, Clark AG, Holt RA. Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla. Genome Research. 16: 173-81. PMID 16365383 DOI: 10.1101/Gr.4456006  1
2005 Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, Lyle R, Hunt S, Kahl B, Antonarakis SE, Tavaré S, Deloukas P, Dermitzakis ET. Genome-wide associations of gene expression variation in humans. Plos Genetics. 1: e78. PMID 16362079 DOI: 10.1371/Journal.Pgen.0010078  1
2005 Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C. Genomic scans for selective sweeps using SNP data. Genome Research. 15: 1566-75. PMID 16251466 DOI: 10.1101/Gr.4252305  0.32
2005 Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. Ascertainment bias in studies of human genome-wide polymorphism. Genome Research. 15: 1496-502. PMID 16251459 DOI: 10.1101/Gr.4107905  1
2005 Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD, Civello D, Adams MD, Cargill M, Clark AG. Natural selection on protein-coding genes in the human genome. Nature. 437: 1153-7. PMID 16237444 DOI: 10.1038/Nature04240  1
2005 Landry CR, Wittkopp PJ, Taubes CH, Ranz JM, Clark AG, Hartl DL. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics. 171: 1813-22. PMID 16143608 DOI: 10.1534/Genetics.105.047449  1
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the cross section for prompt diphoton production in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 95: 022003. PMID 16090675 DOI: 10.1103/Physrevlett.95.022003  0.52
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Search for anomalous kinematics in tt dilepton events at CDF II. Physical Review Letters. 95: 022001. PMID 16090673 DOI: 10.1103/Physrevlett.95.022001  0.52
2005 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Measurement of dijet azimuthal decorrelations at central rapidities in pp collisions at sqrt s =1.96 TeV. Physical Review Letters. 94: 221801. PMID 16090381 DOI: 10.1103/Physrevlett.94.221801  1
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the W(+)W(-) production cross section in pp collisions at square root[s]=1.96 TeV using dilepton events. Physical Review Letters. 94: 211801. PMID 16090309 DOI: 10.1103/Physrevlett.94.211801  0.52
2005 Mueller JL, Ravi Ram K, McGraw LA, Bloch Qazi MC, Siggia ED, Clark AG, Aquadro CF, Wolfner MF. Cross-species comparison of Drosophila male accessory gland protein genes. Genetics. 171: 131-43. PMID 15944345 DOI: 10.1534/Genetics.105.043844  1
2005 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Measurement of partial widths and search for direct CP violation in D0 meson decays to K-K+ and pi-pi+. Physical Review Letters. 94: 122001. PMID 15903906 DOI: 10.1103/Physrevlett.94.122001  0.64
2005 Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, Hubisz MJ, Fledel-Alon A, Tanenbaum DM, Civello D, White TJ, J Sninsky J, Adams MD, Cargill M. A scan for positively selected genes in the genomes of humans and chimpanzees. Plos Biology. 3: e170. PMID 15869325 DOI: 10.1371/Journal.Pbio.0030170  1
2005 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Measurement of the B0s lifetime in the exclusive decay channel B0s-->J/psiphi. Physical Review Letters. 94: 042001. PMID 15783550 DOI: 10.1103/Physrevlett.94.042001  1
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of Wgamma and Zgamma production in pp collisions at square root s=1.96 TeV. Physical Review Letters. 94: 041803. PMID 15783549 DOI: 10.1103/Physrevlett.94.041803  0.64
2005 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Search for supersymmetry with gauge-mediated breaking in diphoton events at D0. Physical Review Letters. 94: 041801. PMID 15783547 DOI: 10.1103/Physrevlett.94.041801  0.96
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the lifetime difference between Bs mass eigenstates. Physical Review Letters. 94: 101803. PMID 15783473 DOI: 10.1103/Physrevlett.94.101803  0.48
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Search for excited and exotic electrons in the egamma decay channel in pp collisions at sqrt[s] = 1.96 TeV. Physical Review Letters. 94: 101802. PMID 15783472 DOI: 10.1103/Physrevlett.94.101802  0.52
2005 De La Vega FM, Isaac H, Collins A, Scafe CR, Halldórsson BV, Su X, Lippert RA, Wang Y, Laig-Webster M, Koehler RT, Ziegle JS, Wogan LT, Stevens JF, Leinen KM, Olson SJ, ... ... Clark AG, et al. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Research. 15: 454-62. PMID 15781572 DOI: 10.1101/Gr.3241705  1
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... Clark AG, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305  1
2005 Klos KLE, Hamon S, Clark AG, Boerwinkle E, Liu K, Sing CF. APOA5 polymorphisms influence plasma triglycerides in young, healthy African Americans and whites of the CARDIA Study Journal of Lipid Research. 46: 564-570. PMID 15604515 DOI: 10.1194/Jlr.M400437-Jlr200  1
2005 Carvalho AB, Clark AG. Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y. Science (New York, N.Y.). 307: 108-10. PMID 15528405 DOI: 10.1126/Science.1101675  0.84
2005 Zhang M, Montooth KL, Wells MT, Clark AG, Zhang D. Mapping multiple Quantitative Trait Loci by Bayesian classification. Genetics. 169: 2305-18. PMID 15520261 DOI: 10.1534/Genetics.104.034181  1
2005 Fiumera AC, Dumont BL, Clark AG. Sperm competitive ability in Drosophila melanogaster associated with variation in male reproductive proteins. Genetics. 169: 243-57. PMID 15466425 DOI: 10.1534/Genetics.104.032870  1
2004 Gold B, Kalush F, Bergeron J, Scott K, Mitra N, Wilson K, Ellis N, Huang H, Chen M, Lippert R, Halldorsson BV, Woodworth B, White T, Clark AG, Parl FF, et al. Estrogen receptor genotypes and haplotypes associated with breast cancer risk. Cancer Research. 64: 8891-900. PMID 15604249 DOI: 10.1158/0008-5472.Can-04-1256  1
2004 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Search for doubly charged Higgs bosons decaying to dileptons in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 93: 221802. PMID 15601082 DOI: 10.1103/Physrevlett.93.221802  0.12
2004 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Measurement of the tt production cross section in pp collisions at sqrt[s]=1.96 TeV using dilepton events. Physical Review Letters. 93: 142001. PMID 15524782 DOI: 10.1103/Physrevlett.93.142001  0.52
2004 Nielsen R, Hubisz MJ, Clark AG. Reconstituting the Frequency Spectrum of Ascertained Single-Nucleotide Polymorphism Data Genetics. 168: 2373-2382. PMID 15371362 DOI: 10.1534/Genetics.104.031039  0.32
2004 Acosta D, Affolder T, Ahn MH, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arguin JF, ... ... Clark AG, et al. Observation of the narrow state X(3872)-->J/psipi+pi- in pp collisions at sqaure root of s=1.96 TeV. Physical Review Letters. 93: 072001. PMID 15324226 DOI: 10.1103/Physrevlett.93.072001  0.52
2004 Acousta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Search for B0s-->micro+micro- and B0d-->micro+micro- decays in pp collisions at square root s = 1.96 TeV. Physical Review Letters. 93: 032001. PMID 15323815 DOI: 10.1103/Physrevlett.93.032001  0.48
2004 Halldórsson BV, Bafna V, Lippert R, Schwartz R, De La Vega FM, Clark AG, Istrail S. Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies. Genome Research. 14: 1633-40. PMID 15289481 DOI: 10.1101/Gr.2570004  1
2004 Wittkopp PJ, Haerum BK, Clark AG. Evolutionary changes in cis and trans gene regulation Nature. 430: 85-88. PMID 15229602 DOI: 10.1038/Nature02698  0.52
2004 Fullerton SM, Buchanan AV, Sonpar VA, Taylor SL, Smith JD, Carlson CS, Salomaa V, StengÃ¥rd JH, Boerwinkle E, Clark AG, Nickerson DA, Weiss KM. The effects of scale: variation in the APOA1/C3/A4/A5 gene cluster. Human Genetics. 115: 36-56. PMID 15108119 DOI: 10.1007/S00439-004-1106-X  1
2004 Lazzaro BP, Sceurman BK, Clark AG. Genetic basis of natural variation in D. melanogaster antibacterial immunity. Science (New York, N.Y.). 303: 1873-6. PMID 15031506 DOI: 10.1126/Science.1092447  1
2004 Spencer HG, Feldman MW, Clark AG, Weisstein AE. The effect of genetic conflict on genomic imprinting and modification of expression at a sex-linked locus. Genetics. 166: 565-79. PMID 15020445 DOI: 10.1534/Genetics.166.1.565  1
2004 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... ... Clark AG, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100  1
2004 Chookajorn T, Kachroo A, Ripoll DR, Clark AG, Nasrallah JB. Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand. Proceedings of the National Academy of Sciences of the United States of America. 101: 911-7. PMID 14694189 DOI: 10.1073/Pnas.2637116100  1
2003 Clark AG, Glanowski S, Nielsen R, Thomas P, Kejariwal A, Todd MJ, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, et al. Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments. Cold Spring Harbor Symposia On Quantitative Biology. 68: 471-7. PMID 15338650 DOI: 10.1101/Sqb.2003.68.479  1
2003 Acosta D, Affolder T, Ahn MH, Akimoto T, Albrow MG, Ambrose D, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arguin JF, Arisawa T, ... ... Clark AG, et al. Measurement of prompt charm meson production cross sections in pp collisions at square root s = 1.96 TeV. Physical Review Letters. 91: 241804. PMID 14683110 DOI: 10.1103/Physrevlett.91.241804  0.52
2003 Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, et al. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science (New York, N.Y.). 302: 1960-3. PMID 14671302 DOI: 10.1126/Science.1088821  1
2003 Montooth KL, Marden JH, Clark AG. Mapping determinants of variation in energy metabolism, respiration and flight in Drosophila. Genetics. 165: 623-35. PMID 14573475  1
2003 Zhang J, Rowe WL, Clark AG, Buetow KH. Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations. American Journal of Human Genetics. 73: 1073-81. PMID 14560401 DOI: 10.1086/379154  0.48
2003 Kroetz DL, Pauli-Magnus C, Hodges LM, Huang CC, Kawamoto M, Johns SJ, Stryke D, Ferrin TE, DeYoung J, Taylor T, Carlson EJ, Herskowitz I, Giacomini KM, Clark AG. Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene. Pharmacogenetics. 13: 481-94. PMID 12893986 DOI: 10.1097/00008571-200308000-00006  1
2003 Matise TC, Sachidanandam R, Clark AG, Kruglyak L, Wijsman E, Kakol J, Buyske S, Chui B, Cohen P, de Toma C, Ehm M, Glanowski S, He C, Heil J, Markianos K, et al. A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set. American Journal of Human Genetics. 73: 271-84. PMID 12844283 DOI: 10.1086/377137  1
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  1
2003 Leabman MK, Huang CC, DeYoung J, Carlson EJ, Taylor TR, de la Cruz M, Johns SJ, Stryke D, Kawamoto M, Urban TJ, Kroetz DL, Ferrin TE, Clark AG, Risch N, Herskowitz I, et al. Natural variation in human membrane transporter genes reveals evolutionary and functional constraints. Proceedings of the National Academy of Sciences of the United States of America. 100: 5896-901. PMID 12719533 DOI: 10.1073/Pnas.0730857100  1
2003 Lazzaro BP, Clark AG. Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster. Molecular Biology and Evolution. 20: 914-23. PMID 12716986 DOI: 10.1093/Molbev/Msg109  1
2003 Dermitzakis ET, Bergman CM, Clark AG. Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites. Molecular Biology and Evolution. 20: 703-14. PMID 12679540 DOI: 10.1093/Molbev/Msg077  1
2003 Schwartz R, Halldórsson BV, Bafna V, Clark AG, Istrail S. Robustness of inference of haplotype block structure. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 13-9. PMID 12676048 DOI: 10.1089/106652703763255642  1
2003 Mishmar D, Ruiz-Pesini E, Golik P, Macaulay V, Clark AG, Hosseini S, Brandon M, Easley K, Chen E, Brown MD, Sukernik RI, Olckers A, Wallace DC. Natural selection shaped regional mtDNA variation in humans. Proceedings of the National Academy of Sciences of the United States of America. 100: 171-6. PMID 12509511 DOI: 10.1073/Pnas.0136972100  1
2003 Bafna V, Halldórsson BV, Schwartz R, Clark AG, Istrail S. Haplotypes and informative SNP selection algorithms: Don't block out information Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 19-27.  1
2002 Clark AG, Otto SP. Genomes and evolution population genetics and molecular evolution of whole genomes Current Opinion in Genetics and Development. 12: 631-633. PMID 12433574 DOI: 10.1016/S0959-437X(02)00362-3  1
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181  1
2002 Lazzaro BP, Sceurman BK, Carney SL, Clark AG. fRFLP and fAFLP: medium-throughput genotyping by fluorescently post-labeling restriction digestion. Biotechniques. 33: 539-40, 542, 545-6. PMID 12238764 DOI: 10.2144/02333St04  1
2002 Leabman MK, Huang CC, Kawamoto M, Johns SJ, Stryke D, Ferrin TE, DeYoung J, Taylor T, Clark AG, Herskowitz I, Giacomini KM. Polymorphisms in a human kidney xenobiotic transporter, OCT2, exhibit altered function. Pharmacogenetics. 12: 395-405. PMID 12142729 DOI: 10.1097/00008571-200207000-00007  1
2002 Fullerton SM, Clark AG, Weiss KM, Taylor SL, StengÃ¥rd JH, Salomaa V, Boerwinkle E, Nickerson DA. Sequence polymorphism at the human apolipoprotein AII gene ( APOA2): unexpected deficit of variation in an African-American sample. Human Genetics. 111: 75-87. PMID 12136239 DOI: 10.1007/S00439-002-0763-X  1
2002 Dermitzakis ET, Clark AG. Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover Molecular Biology and Evolution. 19: 1114-1121. PMID 12082130 DOI: 10.1093/Oxfordjournals.Molbev.A004169  0.72
2002 Civetta A, Waldrip-Dail HM, Clark AG. An introgression approach to mapping differences in mating success and sperm competitive ability in Drosophila simulans and D. sechellia. Genetical Research. 79: 65-74. PMID 11974604 DOI: 10.1017/S0016672301005419  1
2002 Fullerton SM, Clark AG, Weiss KM, Taylor SL, Stengård JH, Salomaa V, Boerwinkle E, Nickerson DA. Sequence polymorphism at the human apolipoprotein AII gene (APOA2): Unexpected deficit of variation in an African-American sample (Human Genetics (2002) III (75-87)) Human Genetics. 111: 577-578. DOI: 10.1007/S00439-002-0850-Z  1
2001 Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 98: 13225-30. PMID 11687639 DOI: 10.1073/Pnas.231484998  0.84
2001 Lazzaro BP, Clark AG. Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster. Genetics. 159: 659-71. PMID 11606542  1
2001 Subrahmanyan L, Eberle MA, Clark AG, Kruglyak L, Nickerson DA. Sequence variation and linkage disequilibrium in the human T-cell receptor beta (TCRB) locus. American Journal of Human Genetics. 69: 381-95. PMID 11438886 DOI: 10.1086/321297  1
2001 Tishkoff SA, Varkonyi R, Cahinhinan N, Abbes S, Argyropoulos G, Destro-Bisol G, Drousiotou A, Dangerfield B, Lefranc G, Loiselet J, Piro A, Stoneking M, Tagarelli A, Tagarelli G, Touma EH, ... ... Clark AG, et al. Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance. Science (New York, N.Y.). 293: 455-62. PMID 11423617 DOI: 10.1126/Science.1061573  1
2001 Swanson WJ, Clark AG, Waldrip-Dail HM, Wolfner MF, Aquadro CF. Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 98: 7375-9. PMID 11404480 DOI: 10.1073/Pnas.131568198  1
2001 Fullerton SM, Bernardo Carvalho A, Clark AG. Local rates of recombination are positively correlated with GC content in the human genome. Molecular Biology and Evolution. 18: 1139-42. PMID 11371603 DOI: 10.1093/Oxfordjournals.Molbev.A003886  1
2001 Dermitzakis ET, Clark AG. Differential Selection After Duplication in Mammalian Developmental Genes Molecular Biology and Evolution. 18: 557-562. PMID 11264407 DOI: 10.1093/Oxfordjournals.Molbev.A003835  0.72
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, ... ... Clark AG, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  1
2001 Clark A, Weiss KM, Fullerton SM, Nickerson DA, Sing CF. Fine-structure of linkage disequilibrium in candidate genes for cardiovascular disease Pathologie Biologie. 49: 405. DOI: 10.1016/S0369-8114(01)00192-4  1
2000 Civetta A, Clark AG. Correlated effects of sperm competition and postmating female mortality. Proceedings of the National Academy of Sciences of the United States of America. 97: 13162-5. PMID 11078508 DOI: 10.1073/Pnas.230305397  1
2000 Carvalho AB, Lazzaro BP, Clark AG. Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proceedings of the National Academy of Sciences of the United States of America. 97: 13239-44. PMID 11069293 DOI: 10.1073/Pnas.230438397  1
2000 Nickerson DA, Taylor SL, Fullerton SM, Weiss KM, Clark AG, StengÃ¥rd JH, Salomaa V, Boerwinkle E, Sing CF. Sequence diversity and large-scale typing of SNPs in the human apolipoprotein E gene. Genome Research. 10: 1532-45. PMID 11042151 DOI: 10.1101/Gr.146900  1
2000 Abbott B, Abolins M, Abramov V, Acharya BS, Adams DL, Adams M, Akimov V, Alves GA, Amos N, Anderson EW, Baarmand MM, Babintsev VV, Babukhadia L, Baden A, Baldin B, ... ... Clark AR, et al. Probing Balitsky-Fadin-Kuraev-Lipatov dynamics in the dijet cross section at large rapidity intervals in pp collisions at sqrt[s]=1800 and 630 GeV. Physical Review Letters. 84: 5722-7. PMID 10991039 DOI: 10.1103/Physrevlett.84.5722  1
2000 Abbott B, Abolins M, Abramov V, Acharya BS, Adams DL, Adams M, Ahn S, Akimov V, Alves GA, Amos N, Anderson EW, Baarmand MM, Babintsev VV, Babukhadia L, Baden A, ... ... Clark AR, et al. Measurement of the W-->taunu production cross section in pp collisions at square root s=1.8 TeV. Physical Review Letters. 84: 5710-5. PMID 10991037 DOI: 10.1103/Physrevlett.84.5710  1
2000 Tishkoff SA, Pakstis AJ, Stoneking M, Kidd JR, Destro-Bisol G, Sanjantila A, Lu RB, Deinard AS, Sirugo G, Jenkins T, Kidd KK, Clark AG. Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins. American Journal of Human Genetics. 67: 901-25. PMID 10986042 DOI: 10.1086/303068  1
2000 Fullerton SM, Clark AG, Weiss KM, Nickerson DA, Taylor SL, Stengârd JH, Salomaa V, Vartiainen E, Perola M, Boerwinkle E, Sing CF. Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism. American Journal of Human Genetics. 67: 881-900. PMID 10986041 DOI: 10.1086/303070  1
2000 Clark AG, Dermitzakis ET, Civetta A. Nontransitivity of sperm precedence in Drosophila. Evolution; International Journal of Organic Evolution. 54: 1030-5. PMID 10937275 DOI: 10.1111/J.0014-3820.2000.Tb00102.X  1
2000 Civetta A, Clark AG. Chromosomal effects on male and female components of sperm precedence in Drosophila. Genetical Research. 75: 143-51. PMID 10816972 DOI: 10.1017/S0016672399004292  1
2000 Prout T, Clark AG. Seminal fluid causes temporarily reduced egg hatch in previously mated females. Proceedings. Biological Sciences / the Royal Society. 267: 201-3. PMID 10687828 DOI: 10.1098/Rspb.2000.0988  1
2000 Clark AG, Civetta A. Evolutionary biology. Protamine wars. Nature. 403: 261, 263. PMID 10659834 DOI: 10.1038/35002236  1
2000 Templeton AR, Clark AG, Weiss KM, Nickerson DA, Boerwinkle E, Sing CF. Recombinational and mutational hotspots within the human lipoprotein lipase gene. American Journal of Human Genetics. 66: 69-83. PMID 10631137 DOI: 10.1086/302699  1
1999 Carvalho AB, Clark AG. Intron size and natural selection. Nature. 401: 344. PMID 10517631 DOI: 10.1038/43827  0.84
1999 Spencer HG, Clark AG, Feldman MW. Genetic conflicts and the evolutionary origin of genomic imprinting. Trends in Ecology & Evolution. 14: 197-201. PMID 10322534 DOI: 10.1016/S0169-5347(98)01556-0  1
1999 Clark AG, Begun DJ, Prout T. Female x male interactions in Drosophila sperm competition. Science (New York, N.Y.). 283: 217-20. PMID 9880253 DOI: 10.1126/Science.283.5399.217  1
1998 Harshman LG, Clark AG. INFERENCE OF SPERM COMPETITION FROM BROODS OF FIELD-CAUGHT DROSOPHILA. Evolution; International Journal of Organic Evolution. 52: 1334-1341. PMID 28565391 DOI: 10.1111/J.1558-5646.1998.Tb02015.X  0.32
1998 Spencer HG, Feldman MW, Clark AG. Genetic conflicts, multiple paternity and the evolution of genomic imprinting. Genetics. 148: 893-904. PMID 9504935  1
1997 Thomas GH, Newbern EC, Korte CC, Bales MA, Muse SV, Clark AG, Kiehart DP. Intragenic duplication and divergence in the spectrin superfamily of proteins. Molecular Biology and Evolution. 14: 1285-95. PMID 9402739 DOI: 10.1093/Oxfordjournals.Molbev.A025738  1
1997 Muse SV, Clark AG, Thomas GH. Comparisons of the nucleotide substitution process among repetitive segments of the alpha- and beta-spectrin genes. Journal of Molecular Evolution. 44: 492-500. PMID 9115173 DOI: 10.1007/Pl00006173  1
1997 Clark AG, Zheng Y. Dynamics of linkage disequilibrium in bacterial genomes undergoing transformation and/or conjugation Journal of Evolutionary Biology. 10: 663-676. DOI: 10.1046/J.1420-9101.1997.10040663.X  0.68
1996 Clark AG, Leicht BG, Muse SV. Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Molecular Biology and Evolution. 13: 471-82. PMID 8742636 DOI: 10.1093/Oxfordjournals.Molbev.A025608  1
1995 Clark AG, Guadalupe RN. Probing the evolution of senescence in Drosophila melanogaster with P-element tagging Genetica. 96: 225-234. PMID 8522162 DOI: 10.1007/Bf01439576  1
1995 Clark AG, Aguadé M, Prout T, Harshman LG, Langley CH. Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster. Genetics. 139: 189-201. PMID 7705622  1
1995 Clark AG, Hamilton JF, Chambers GK. Inference of population subdivision from the VNTR distributions of New Zealanders. Genetica. 96: 37-49. PMID 7607458 DOI: 10.1007/Bf01441150  1
1995 Wang L, Clark AG. Physiological genetics of the response to a high-sucrose diet by Drosophila melanogaster. Biochemical Genetics. 33: 149-165. PMID 7575391 DOI: 10.1007/Bf00554727  1
1995 Leicht BG, Muse SV, Hanczyc M, Clark AG. Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics. 139: 299-308. PMID 7535717  1
1995 Goldstein DB, Clark AG. Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Research. 23: 3882-6. PMID 7479031 DOI: 10.1093/Nar/23.19.3882  0.64
1994 Clark AG, Wang L. COMPARATIVE EVOLUTIONARY ANALYSIS OF METABOLISM IN NINE DROSOPHILA SPECIES. Evolution; International Journal of Organic Evolution. 48: 1230-1243. PMID 28564452 DOI: 10.1111/J.1558-5646.1994.Tb05308.X  1
1994 Clark AG, Silveria S, Meyers W, Langley CH. Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions. Proceedings of the National Academy of Sciences of the United States of America. 91: 719-22. PMID 8290588 DOI: 10.1073/Pnas.91.2.719  1
1993 Leicht BG, Lyckegaard EM, Benedict CM, Clark AG. Conservation of alternative splicing and genomic organization of the myosin alkali light-chain (Mlc1) gene among Drosophila species. Molecular Biology and Evolution. 10: 769-90. PMID 8355600 DOI: 10.1093/Oxfordjournals.Molbev.A040043  1
1992 Clark AG, Whittam TS. Sequencing errors and molecular evolutionary analysis. Molecular Biology and Evolution. 9: 744-52. PMID 1630310 DOI: 10.1093/Oxfordjournals.Molbev.A040756  1
1991 Krane DE, Clark AG, Cheng JF, Hardison RC. Subfamily relationships and clustering of rabbit C repeats Molecular Biology and Evolution. 8: 1-30. PMID 2002760 DOI: 10.1093/Oxfordjournals.Molbev.A040631  1
1991 Clark AG, Kao TH. Excess nonsynonymous substitution at shared polymorphic sites among self-incompatibility alleles of Solanaceae Proceedings of the National Academy of Sciences of the United States of America. 88: 9823-9827. PMID 1946408 DOI: 10.1073/Pnas.88.21.9823  1
1991 Merriwether DA, Clark AG, Ballinger SW, Schurr TG, Soodyall H, Jenkins T, Sherry ST, Wallace DC. The structure of human mitochondrial DNA variation. Journal of Molecular Evolution. 33: 543-55. PMID 1685753 DOI: 10.1007/BF02102807  1
1990 Ioerger TR, Clark AG, Kao TH. Polymorphism at the self-incompatibility locus in Solanaceae predates speciation Proceedings of the National Academy of Sciences of the United States of America. 87: 9732-9735. PMID 2263623 DOI: 10.1073/Pnas.87.24.9732  1
1990 Clark AG, Szumski FM, Bell KA, Keith LE, Houtz S, Merriwether DA. Direct and correlated responses to artificial selection on lipid and glycogen contents in Drosophila melanogaster. Genetical Research. 56: 49-56. PMID 2121604 DOI: 10.1017/S0016672300028871  1
1986 Clark AG, Feldman MW. A numerical simulation of the one-locus, multiple-allele fertility model. Genetics. 113: 161-76. PMID 3710142  1
1986 Teague BD, Clark AG, Doane WW. Developmental analysis of lipids from wild-type and adipose60 mutants of Drosophila melanogaster. The Journal of Experimental Zoology. 240: 95-104. PMID 3095486 DOI: 10.1002/Jez.1402400112  1
1986 Whittam TS, Clark AG, Stoneking M, Cann RL, Wilson AC. Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proceedings of the National Academy of Sciences of the United States of America. 83: 9611-5. PMID 2432597 DOI: 10.1073/Pnas.83.24.9611  1
1984 Clark AG, Doane WW. INTERACTIONS BETWEEN THE AMYLASE AND ADIPOSE CHROMOSOMAL REGIONS OF DROSOPHILA MELANOGASTER. Evolution; International Journal of Organic Evolution. 38: 957-982. PMID 28555787 DOI: 10.1111/J.1558-5646.1984.Tb00366.X  0.96
1984 Markow TA, Clark AG. Correlated response to phototactic selection. Behavior Genetics. 14: 279-93. PMID 6435597 DOI: 10.1007/Bf01065547  1
1984 Turelli M, Clark AG, Spofford JB. Linkage data supporting a mathematical explanation for some empirical cis-trans effects. Heredity. 52: 145-7. PMID 6423575 DOI: 10.1038/Hdy.1984.15  1
1983 Clark AG, Doane WW. Desiccation tolerance of the adipose60 mutant of Drosophila melanogaster. Hereditas. 99: 165-75. PMID 6421774 DOI: 10.1111/J.1601-5223.1983.Tb00888.X  1
1981 Clark AG, Feldman MW. Density-Dependent Fertility Selection in Experimental Populations of DROSOPHILA MELANOGASTER. Genetics. 98: 849-69. PMID 17249109  1
1981 Clark AG, Feldman MW. Disequilibrium between linked inversions: an alternative hypothesis. Heredity. 46: 379-90. PMID 6792164 DOI: 10.1038/Hdy.1981.46  1
1981 Clark AG, Feldman MW. The estimation of epistasis in components of fitness in experimental populations of drosophila melanogaster II. Assessment of meiotic drive, viability, fecundity and sexual selection. Heredity. 46: 347-77. PMID 6792163 DOI: 10.1038/Hdy.1981.45  1
1981 Clark AG, Feldman MW, Christiansen FB. The estimation of epistasis in components of fitness in experimental populations of Drosophila melanogaster I. A two-stage maximum likelihood model. Heredity. 46: 321-46. PMID 6792162 DOI: 10.1038/Hdy.1981.44  1
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