Andy Clark - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 

222 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Jackson M, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ. Signatures of early frailty in the gut microbiota. Genome Medicine. 8: 8. PMID 26822992 DOI: 10.1186/s13073-016-0262-7  1
2016 Rodriguez-Flores J, Fakhro K, Agosto-Perez F, Ramstetter M, Arbiza L, Vincent T, Robay A, Malek J, Suhre K, Chouchane L, Badii R, Al-Nabet Al-Marri A, Abi Khalil C, Zirie M, Jayyousi A, ... ... Clark A, et al. Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations. Genome Research. PMID 26728717 DOI: 10.1101/gr.191478.115  1
2015 Chow CY, Kelsey KJ, Wolfner MF, Clark AG. Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila. Human Molecular Genetics. PMID 26662796 DOI: 10.1093/hmg/ddv502  0.6
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Search for metastable heavy charged particles with large ionisation energy loss in pp collisions at [Formula: see text] TeV using the ATLAS experiment. The European Physical Journal. C, Particles and Fields. 75: 407. PMID 26543401 DOI: 10.1140/epjc/s10052-015-3609-0  0.44
2015 Alexander KA, Wang X, Shibata M, Clark AG, García-García MJ. TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming. Cell Reports. PMID 26527006 DOI: 10.1016/j.celrep.2015.09.078  0.96
2015 Hsu FM, Clark A, Chen PY. Epigenetic reprogramming in the mammalian germline. Oncotarget. PMID 26506592 DOI: 10.18632/oncotarget.6206  0.4
2015 Slavney A, Arbiza L, Clark AG, Keinan A. Strong constraint on human genes escaping X-inactivation is modulated by their expression level and breadth in both sexes. Molecular Biology and Evolution. PMID 26494842 DOI: 10.1093/molbev/msv225  1
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Two-particle Bose-Einstein correlations in pp collisions at [Formula: see text] 0.9 and 7 TeV measured with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 466. PMID 26457062 DOI: 10.1140/epjc/s10052-015-3644-x  0.44
2015 Zhang J, Hobkirk J, Carroll S, Pellicori P, Clark AL, Cleland JG. Exploring quality of life in patients with and without heart failure. International Journal of Cardiology. 202: 676-684. PMID 26453816 DOI: 10.1016/j.ijcard.2015.09.076  0.44
2015 Carvalho AB, Vicoso B, Russo CA, Swenor B, Clark AG. Birth of a new gene on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 112: 12450-5. PMID 26385968 DOI: 10.1073/pnas.1516543112  1
2015 Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, Spector TD, Keinan A, Ley RE, Gevers D, Clark AG. Host genetic variation impacts microbiome composition across human body sites. Genome Biology. 16: 191. PMID 26374288 DOI: 10.1186/s13059-015-0759-1  0.32
2015 Pellicori P, Clark AL. Clinical trials update from the European Society of Cardiology-Heart Failure meeting 2015: AUGMENT-HF, TITRATION, STOP-HF, HARMONIZE, LION HEART, MOOD-HF, and renin-angiotensin inhibitors in patients with heart and renal failure. European Journal of Heart Failure. 17: 979-83. PMID 26289928 DOI: 10.1002/ejhf.340  0.44
2015 Unckless RL, Messer PW, Connallon T, Clark AG. Modeling the Manipulation of Natural Populations by the Mutagenic Chain Reaction. Genetics. 201: 425-31. PMID 26232409 DOI: 10.1534/genetics.115.177592  1
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Search for a Heavy Neutral Particle Decaying to eμ, eτ, or μτ in pp Collisions at sqrt[s]=8  TeV with the ATLAS Detector. Physical Review Letters. 115: 031801. PMID 26230783 DOI: 10.1103/PhysRevLett.115.031801  0.72
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Constraints on the off-shell Higgs boson signal strength in the high-mass ZZ and WW final states with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 335. PMID 26213488 DOI: 10.1140/epjc/s10052-015-3542-2  0.72
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Search for New Phenomena in Dijet Angular Distributions in Proton-Proton Collisions at sqrt[s]=8 TeV Measured with the ATLAS Detector. Physical Review Letters. 114: 221802. PMID 26196615 DOI: 10.1103/PhysRevLett.114.221802  0.72
2015 Meisel RP, Scott JG, Clark AG. Transcriptome Differences between Alternative Sex Determining Genotypes in the House Fly, Musca domestica. Genome Biology and Evolution. 7: 2051-61. PMID 26142430 DOI: 10.1093/gbe/evv128  1
2015 Wang X, Werren JH, Clark AG. Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100871 DOI: 10.1073/pnas.1510338112  1
2015 Farag M, Mabote T, Shoaib A, Zhang J, Nabhan AF, Clark AL, Cleland JG. Hydralazine and nitrates alone or combined for the management of chronic heart failure: A systematic review. International Journal of Cardiology. 196: 61-9. PMID 26073215 DOI: 10.1016/j.ijcard.2015.05.160  0.44
2015 Wang J, Clark A, Swick B. Flaccid pustules and vesicles in a middle-aged woman. Clinical and Experimental Dermatology. PMID 26054043 DOI: 10.1111/ced.12693  0.6
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, ... ... Clark A, et al. Determination of spin and parity of the Higgs boson in the [Formula: see text] decay channel with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 231. PMID 26041978 DOI: 10.1140/epjc/s10052-015-3436-3  0.2
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Observation and measurements of the production of prompt and non-prompt [Formula: see text] mesons in association with a [Formula: see text] boson in [Formula: see text] collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 229. PMID 26041977 DOI: 10.1140/epjc/s10052-015-3406-9  0.48
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of three-jet production cross-sections in [Formula: see text] collisions at 7 [Formula: see text] centre-of-mass energy using the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 228. PMID 26041976 DOI: 10.1140/epjc/s10052-015-3363-3  0.72
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of the top-quark mass in the fully hadronic decay channel from ATLAS data at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 158. PMID 26041974 DOI: 10.1140/epjc/s10052-015-3373-1  0.01
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Clark A, et al. Combined Measurement of the Higgs Boson Mass in pp Collisions at sqrt[s]=7 and 8 TeV with the ATLAS and CMS Experiments. Physical Review Letters. 114: 191803. PMID 26024162 DOI: 10.1103/PhysRevLett.114.191803  0.01
2015 Pellicori P, Kallvikbacka-Bennett A, Dierckx R, Zhang J, Putzu P, Cuthbert J, Boyalla V, Shoaib A, Clark AL, Cleland JG. Prognostic significance of ultrasound-assessed jugular vein distensibility in heart failure. Heart (British Cardiac Society). 101: 1149-58. PMID 26006717 DOI: 10.1136/heartjnl-2015-307558  0.44
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for production of [Formula: see text] resonances decaying to a lepton, neutrino and jets in [Formula: see text] collisions at [Formula: see text] TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 209. PMID 25995709 DOI: 10.1140/epjc/s10052-015-3425-6  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for direct pair production of a chargino and a neutralino decaying to the 125 GeV Higgs boson in [Formula: see text] TeV [Formula: see text] collisions with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 208. PMID 25995708 DOI: 10.1140/epjc/s10052-015-3408-7  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurement of the production and lepton charge asymmetry of [Formula: see text] bosons in Pb+Pb collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 23. PMID 25983646 DOI: 10.1140/epjc/s10052-014-3231-6  0.01
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Corrigendum: Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 7296. PMID 25976209 DOI: 10.1038/ncomms8296  0.96
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Scalar Charm Quark Pair Production in pp Collisions at sqrt[s]=8  TeV with the ATLAS Detector. Physical Review Letters. 114: 161801. PMID 25955046 DOI: 10.1103/PhysRevLett.114.161801  0.01
2015 Ayroles JF, Buchanan SM, O'Leary C, Skutt-Kakaria K, Grenier JK, Clark AG, Hartl DL, de Bivort BL. Behavioral idiosyncrasy reveals genetic control of phenotypic variability. Proceedings of the National Academy of Sciences of the United States of America. 112: 6706-11. PMID 25953335 DOI: 10.1073/pnas.1503830112  1
2015 Costanzo P, Cleland JG, Pellicori P, Clark AL, Hepburn D, Kilpatrick ES, Perrone-Filardi P, Zhang J, Atkin SL. The obesity paradox in type 2 diabetes mellitus: relationship of body mass index to prognosis: a cohort study. Annals of Internal Medicine. 162: 610-8. PMID 25938991 DOI: 10.7326/M14-1551  0.44
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for [Formula: see text] decays in [Formula: see text] collisions at [Formula: see text] = 8 TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 165. PMID 25937816 DOI: 10.1140/epjc/s10052-015-3372-2  0.01
2015 Connallon T, Clark AG. The distribution of fitness effects in an uncertain world. Evolution; International Journal of Organic Evolution. 69: 1610-8. PMID 25913128 DOI: 10.1111/evo.12673  0.6
2015 Pellicori P, Joseph AC, Zhang J, Lukaschuk E, Sherwi N, Bourantas CV, Loh H, Clark AL, Cleland JG. The relationship of QRS morphology with cardiac structure and function in patients with heart failure. Clinical Research in Cardiology : Official Journal of the German Cardiac Society. PMID 25903113 DOI: 10.1007/s00392-015-0861-0  0.44
2015 Damy T, Hobkirk J, Walters M, Ciobanu A, Rigby AS, Kallvikbacka-Bennett A, Guellich A, Dubois-Randé JL, Hittinger L, Clark AL, Cleland JG. Development of a Human Model for the Study of Effects of Hypoxia, Exercise and Sildenafil on Cardiac and Vascular Function in Chronic Heart Failure. Journal of Cardiovascular Pharmacology. PMID 25874853 DOI: 10.1097/FJC.0000000000000262  0.44
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Higgs and Z Boson Decays to J/ψγ and ϒ(nS)γ with the ATLAS Detector. Physical Review Letters. 114: 121801. PMID 25860734 DOI: 10.1103/PhysRevLett.114.121801  0.72
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Performance of the ATLAS muon trigger in pp collisions at [Formula: see text] TeV. The European Physical Journal. C, Particles and Fields. 75: 120. PMID 25838797 DOI: 10.1140/epjc/s10052-015-3325-9  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for dark matter in events with heavy quarks and missing transverse momentum in [Formula: see text] collisions with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 92. PMID 25838796 DOI: 10.1140/epjc/s10052-015-3306-z  0.01
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Measurements of the [Formula: see text] production cross sections in association with jets with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 82. PMID 25838794 DOI: 10.1140/epjc/s10052-015-3262-7  0.2
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for invisible particles produced in association with single-top-quarks in proton-proton collisions at [Formula: see text] with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 79. PMID 25838793 DOI: 10.1140/epjc/s10052-014-3233-4  0.72
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, ... ... Clark A, et al. Search for resonant diboson production in the [Formula: see text] final state in [Formula: see text] collisions at [Formula: see text] TeV with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 75: 69. PMID 25838792 DOI: 10.1140/epjc/s10052-015-3261-8  0.72
2015 Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C, Morrison A, Johnson AD, Bis J, Cupples LA, Psaty BM, ... ... Clark AG, et al. Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions. Plos One. 10: e0121644. PMID 25807536 DOI: 10.1371/journal.pone.0121644  1
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Search for Higgs boson pair production in the γγbb[over ¯] final state using pp collision data at sqrt[s]=8  TeV from the ATLAS detector. Physical Review Letters. 114: 081802. PMID 25768755 DOI: 10.1103/PhysRevLett.114.081802  0.01
2015 Dierckx R, Cleland JG, Pellicori P, Zhang J, Goode K, Putzu P, Boyalla V, Clark AL. If home telemonitoring reduces mortality in heart failure, is this just due to better guideline-based treatment? Journal of Telemedicine and Telecare. PMID 25766855 DOI: 10.1177/1357633X15574947  0.44
2015 Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, ... ... Clark A, et al. Measurements of the Nuclear Modification Factor for Jets in Pb+Pb Collisions at √(s)NN]=2.76  TeV with the ATLAS detector. Physical Review Letters. 114: 072302. PMID 25763955 DOI: 10.1103/PhysRevLett.114.072302  0.01
2015 Chow CY, Avila FW, Clark AG, Wolfner MF. Induction of excessive endoplasmic reticulum stress in the Drosophila male accessory gland results in infertility. Plos One. 10: e0119386. PMID 25742606 DOI: 10.1371/journal.pone.0119386  1
2015 Phillips WA, Clark A, Silverstein SM. On the functions, mechanisms, and malfunctions of intracortical contextual modulation. Neuroscience and Biobehavioral Reviews. 52: 1-20. PMID 25721105 DOI: 10.1016/j.neubiorev.2015.02.010  1
2015 Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE. Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster. Nature Communications. 6: 6312. PMID 25692519 DOI: 10.1038/ncomms7312  1
2015 Otgaar H, Howe ML, Clark A, Wang J, Merckelbach H. What if you went to the police and accused your uncle of abuse? Misunderstandings concerning the benefits of memory distortion: A commentary on Fernández (2015). Consciousness and Cognition. 33: 286-90. PMID 25681697 DOI: 10.1016/j.concog.2015.01.015  0.6
2015 Grenier JK, Arguello JR, Moreira MC, Gottipati S, Mohammed J, Hackett SR, Boughton R, Greenberg AJ, Clark AG. Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains. G3 (Bethesda, Md.). 5: 593-603. PMID 25673134 DOI: 10.1534/g3.114.015883  1
2015 Chow CY, Wang X, Riccardi D, Wolfner MF, Clark AG. The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse. Plos Genetics. 11: e1004924. PMID 25651210 DOI: 10.1371/journal.pgen.1004924  1
2015 Unckless RL, Larracuente AM, Clark AG. Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis. Genetics. 199: 831-40. PMID 25571899 DOI: 10.1534/genetics.114.173948  1
2015 Clark AG, Messer PW. Evolutionary genomics. Conundrum of jumbled mosquito genomes. Science (New York, N.Y.). 347: 27-8. PMID 25554775 DOI: 10.1126/science.aaa3600  1
2015 Reinhart M, Carney T, Clark AG, Fiumera AC. Characterizing male-female interactions using natural genetic variation in Drosophila melanogaster. The Journal of Heredity. 106: 67-79. PMID 25425680 DOI: 10.1093/jhered/esu076  0.8
2015 Ma L, Keinan A, Clark AG. Biological knowledge-driven analysis of epistasis in human GWAS with application to lipid traits. Methods in Molecular Biology (Clifton, N.J.). 1253: 35-45. PMID 25403526 DOI: 10.1007/978-1-4939-2155-3_3  1
2015 Lupyan G, Clark A. Words and the World: Predictive Coding and the Language-Perception-Cognition Interface Current Directions in Psychological Science. 24: 279-284. DOI: 10.1177/0963721415570732  1
2015 Clark A. Radical predictive processing Southern Journal of Philosophy. 53: 3-27. DOI: 10.1111/sjp.12120  1
2015 Auton A, Abecasis GR, Altshuler DM, Durbin RM, Bentley DR, Chakravarti A, Clark AG, Donnelly P, Eichler EE, Flicek P, Gabriel SB, Gibbs RA, Green ED, Hurles ME, Knoppers BM, et al. A global reference for human genetic variation Nature. 526: 68-74. DOI: 10.1038/nature15393  1
2015 Clark A. What ‘Extended Me’ knows Synthese. DOI: 10.1007/s11229-015-0719-z  1
2014 Wei KH, Grenier JK, Barbash DA, Clark AG. Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 111: 18793-8. PMID 25512552 DOI: 10.1073/pnas.1421951112  1
2014 Scott JG, Warren WC, Beukeboom LW, Bopp D, Clark AG, Giers SD, Hediger M, Jones AK, Kasai S, Leichter CA, Li M, Meisel RP, Minx P, Murphy TD, Nelson DR, et al. Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. Genome Biology. 15: 466. PMID 25315136 DOI: 10.1186/s13059-014-0466-3  1
2014 Chen N, Van Hout CV, Gottipati S, Clark AG. Using Mendelian inheritance to improve high-throughput SNP discovery. Genetics. 198: 847-57. PMID 25194160 DOI: 10.1534/genetics.114.169052  1
2014 Blekhman R, Perry GH, Shahbaz S, Fiehn O, Clark AG, Gilad Y. Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence. Scientific Reports. 4: 5809. PMID 25069065 DOI: 10.1038/srep05809  1
2014 Singh ND, Koerich LB, Carvalho AB, Clark AG. Positive and purifying selection on the Drosophila Y chromosome. Molecular Biology and Evolution. 31: 2612-23. PMID 24974375 DOI: 10.1093/molbev/msu203  1
2014 Pickering MJ, Clark A. Getting ahead: forward models and their place in cognitive architecture. Trends in Cognitive Sciences. 18: 451-6. PMID 24909775 DOI: 10.1016/j.tics.2014.05.006  1
2014 Lusk CM, Dyson G, Clark AG, Ballantyne CM, Frikke-Schmidt R, Tybjærg-Hansen A, Boerwinkle E, Sing CF. Validated context-dependent associations of coronary heart disease risk with genotype variation in the chromosome 9p21 region: the Atherosclerosis Risk in Communities study. Human Genetics. 133: 1105-16. PMID 24889828 DOI: 10.1007/s00439-014-1451-3  1
2014 Unckless RL, Clark AG. Sex-ratio meiotic drive and interspecific competition. Journal of Evolutionary Biology. 27: 1513-21. PMID 24835887 DOI: 10.1111/jeb.12411  1
2014 Connallon T, Clark AG. Balancing selection in species with separate sexes: insights from Fisher's geometric model. Genetics. 197: 991-1006. PMID 24812306 DOI: 10.1534/genetics.114.165605  1
2014 Clark AG. Genetics: The vital Y chromosome. Nature. 508: 463-5. PMID 24759407 DOI: 10.1038/508463a  1
2014 Wei KH, Clark AG, Barbash DA. Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans. Molecular Biology and Evolution. 31: 1767-78. PMID 24723419 DOI: 10.1093/molbev/msu127  1
2014 Wang X, Clark AG. Using next-generation RNA sequencing to identify imprinted genes. Heredity. 113: 156-66. PMID 24619182 DOI: 10.1038/hdy.2014.18  1
2014 Douglas KC, Wang X, Jasti M, Wolff A, VandeBerg JL, Clark AG, Samollow PB. Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. Bmc Genomics. 15: 89. PMID 24484454 DOI: 10.1186/1471-2164-15-89  1
2014 Bhaskar A, Clark AG, Song YS. Distortion of genealogical properties when the sample is very large. Proceedings of the National Academy of Sciences of the United States of America. 111: 2385-90. PMID 24469801 DOI: 10.1073/pnas.1322709111  1
2014 Spencer HG, Clark AG. Non-conflict theories for the evolution of genomic imprinting. Heredity. 113: 112-8. PMID 24398886 DOI: 10.1038/hdy.2013.129  1
2014 Larracuente AM, Clark AG. Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura. Molecular Biology and Evolution. 31: 846-56. PMID 24390701 DOI: 10.1093/molbev/msu002  1
2014 Gazave E, Ma L, Chang D, Coventry A, Gao F, Muzny D, Boerwinkle E, Gibbs RA, Sing CF, Clark AG, Keinan A. Neutral genomic regions refine models of recent rapid human population growth. Proceedings of the National Academy of Sciences of the United States of America. 111: 757-62. PMID 24379384 DOI: 10.1073/pnas.1310398110  1
2014 Connallon T, Clark AG. Evolutionary inevitability of sexual antagonism. Proceedings. Biological Sciences / the Royal Society. 281: 20132123. PMID 24335980 DOI: 10.1098/rspb.2013.2123  1
2014 Wang X, Douglas KC, Vandeberg JL, Clark AG, Samollow PB. Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica. Genome Research. 24: 70-83. PMID 24065774 DOI: 10.1101/gr.161919.113  1
2013 Sackton TB, Werren JH, Clark AG. Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes. Plos One. 8: e83984. PMID 24386321 DOI: 10.1371/journal.pone.0083984  1
2013 Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ, Green ED, Clark AG, Seixas S. Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity. Genome Biology and Evolution. 5: 2512-23. PMID 24356879 DOI: 10.1093/gbe/evt198  1
2013 Corbett-Detig RB, Zhou J, Clark AG, Hartl DL, Ayroles JF. Genetic incompatibilities are widespread within species. Nature. 504: 135-7. PMID 24196712 DOI: 10.1038/nature12678  1
2013 Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH. Function and evolution of DNA methylation in Nasonia vitripennis. Plos Genetics. 9: e1003872. PMID 24130511 DOI: 10.1371/journal.pgen.1003872  1
2013 Early AM, Clark AG. Monophyly of Wolbachia pipientis genomes within Drosophila melanogaster: geographic structuring, titre variation and host effects across five populations. Molecular Ecology. 22: 5765-78. PMID 24118111 DOI: 10.1111/mec.12530  1
2013 Chakravarti A, Clark AG, Mootha VK. Distilling pathophysiology from complex disease genetics. Cell. 155: 21-6. PMID 24074858 DOI: 10.1016/j.cell.2013.09.001  1
2013 Scheitz CJ, Guo Y, Early AM, Harshman LG, Clark AG. Heritability and inter-population differences in lipid profiles of Drosophila melanogaster. Plos One. 8: e72726. PMID 24013349 DOI: 10.1371/journal.pone.0072726  1
2013 Gazave E, Chang D, Clark AG, Keinan A. Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect. Genetics. 195: 969-78. PMID 23979573 DOI: 10.1534/genetics.113.153973  1
2013 Carvalho AB, Clark AG. Efficient identification of Y chromosome sequences in the human and Drosophila genomes. Genome Research. 23: 1894-907. PMID 23921660 DOI: 10.1101/gr.156034.113  1
2013 Clark A. Are we predictive engines? Perils, prospects, and the puzzle of the porous perceiver. The Behavioral and Brain Sciences. 36: 233-53. PMID 23814868 DOI: 10.1017/S0140525X12002440  1
2013 Guo Y, Wei X, Das J, Grimson A, Lipkin SM, Clark AG, Yu H. Dissecting disease inheritance modes in a three-dimensional protein network challenges the "guilt-by-association" principle. American Journal of Human Genetics. 93: 78-89. PMID 23791107 DOI: 10.1016/j.ajhg.2013.05.022  1
2013 Wang X, Miller DC, Harman R, Antczak DF, Clark AG. Paternally expressed genes predominate in the placenta. Proceedings of the National Academy of Sciences of the United States of America. 110: 10705-10. PMID 23754418 DOI: 10.1073/pnas.1308998110  1
2013 Clark A. The many faces of precision (Replies to commentaries on "Whatever next? Neural prediction, situated agents, and the future of cognitive science"). Frontiers in Psychology. 4: 270. PMID 23734133 DOI: 10.3389/fpsyg.2013.00270  1
2013 Chow CY, Wolfner MF, Clark AG. Using natural variation in Drosophila to discover previously unknown endoplasmic reticulum stress genes. Proceedings of the National Academy of Sciences of the United States of America. 110: 9013-8. PMID 23667151 DOI: 10.1073/pnas.1307125110  1
2013 Clark A. Whatever next? Predictive brains, situated agents, and the future of cognitive science. The Behavioral and Brain Sciences. 36: 181-204. PMID 23663408 DOI: 10.1017/S0140525X12000477  1
2013 Connallon T, Clark AG. Sex-differential selection and the evolution of X inactivation strategies. Plos Genetics. 9: e1003440. PMID 23637618 DOI: 10.1371/journal.pgen.1003440  1
2013 Quintana-Murci L, Clark AG. Population genetic tools for dissecting innate immunity in humans. Nature Reviews. Immunology. 13: 280-93. PMID 23470320 DOI: 10.1038/nri3421  1
2013 Ma L, Clark AG, Keinan A. Gene-based testing of interactions in association studies of quantitative traits. Plos Genetics. 9: e1003321. PMID 23468652 DOI: 10.1371/journal.pgen.1003321  1
2013 Connallon T, Clark AG. Antagonistic versus nonantagonistic models of balancing selection: characterizing the relative timescales and hitchhiking effects of partial selective sweeps. Evolution; International Journal of Organic Evolution. 67: 908-17. PMID 23461340 DOI: 10.1111/j.1558-5646.2012.01800.x  1
2013 Singh ND, Stone EA, Aquadro CF, Clark AG. Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome. Genetics. 194: 375-87. PMID 23410829 DOI: 10.1534/genetics.112.146746  1
2013 Ferreira Z, Seixas S, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Swanson WJ, Clark AG, Green ED, Hurle B. Reproduction and immunity-driven natural selection in the human WFDC locus. Molecular Biology and Evolution. 30: 938-50. PMID 23292442 DOI: 10.1093/molbev/mss329  1
2013 Zhang R, Clark AG, Fiumera AC. Natural genetic variation in male reproductive genes contributes to nontransitivity of sperm competitive ability in Drosophila melanogaster. Molecular Ecology. 22: 1400-15. PMID 23171073 DOI: 10.1111/mec.12113  1
2013 Chow CY, Wolfner MF, Clark AG. Large neurological component to genetic differences underlying biased sperm use in Drosophila. Genetics. 193: 177-85. PMID 23105014 DOI: 10.1534/genetics.112.146357  1
2013 Singh ND, Jensen JD, Clark AG, Aquadro CF. Inferences of demography and selection in an African population of Drosophila melanogaster. Genetics. 193: 215-28. PMID 23105013 DOI: 10.1534/genetics.112.145318  1
2013 Larracuente AM, Clark AG. Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster. Genetics. 193: 201-14. PMID 23086221 DOI: 10.1534/genetics.112.146167  1
2013 Clark A. Expecting the world: Perception, prediction, and the origins of human knowledge Journal of Philosophy. 110: 469-496.  1
2012 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, ... ... Clark A, et al. Search for lepton flavour violation in the eμ continuum with the ATLAS detector in [Formula: see text]pp collisions at the LHC. The European Physical Journal. C, Particles and Fields. 72: 2040. PMID 25814838 DOI: 10.1140/epjc/s10052-012-2040-z  0.01
2012 Cardoso-Moreira M, Arguello JR, Clark AG. Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing. Genome Biology. 13: R119. PMID 23259534 DOI: 10.1186/gb-2012-13-12-r119  1
2012 Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. An integrated map of genetic variation from 1,092 human genomes. Nature. 491: 56-65. PMID 23128226 DOI: 10.1038/nature11632  1
2012 Meisel RP, Malone JH, Clark AG. Faster-X evolution of gene expression in Drosophila. Plos Genetics. 8: e1003013. PMID 23071459 DOI: 10.1371/journal.pgen.1003013  1
2012 Gunnar MR, Wenner JA, Thomas KM, Glatt CE, McKenna MC, Clark AG. The brain-derived neurotrophic factor Val66Met polymorphism moderates early deprivation effects on attention problems. Development and Psychopathology. 24: 1215-23. PMID 23062292 DOI: 10.1017/S095457941200065X  1
2012 Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, ... ... Clark AG, et al. Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. American Journal of Human Genetics. 91: 660-71. PMID 23040495 DOI: 10.1016/j.ajhg.2012.08.025  1
2012 Lang M, Murat S, Clark AG, Gouppil G, Blais C, Matzkin LM, Guittard E, Yoshiyama-Yanagawa T, Kataoka H, Niwa R, Lafont R, Dauphin-Villemant C, Orgogozo V. Mutations in the neverland gene turned Drosophila pachea into an obligate specialist species. Science (New York, N.Y.). 337: 1658-61. PMID 23019649 DOI: 10.1126/science.1224829  1
2012 Ma L, Brautbar A, Boerwinkle E, Sing CF, Clark AG, Keinan A. Knowledge-driven analysis identifies a gene-gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations. Plos Genetics. 8: e1002714. PMID 22654671 DOI: 10.1371/journal.pgen.1002714  1
2012 Wernimont SM, Clark AG, Stover PJ, Wells MT, Litonjua AA, Weiss ST, Gaziano JM, Vokonas PS, Tucker KL, Cassano PA. Folate network genetic variation predicts cardiovascular disease risk in non-Hispanic white males. The Journal of Nutrition. 142: 1272-9. PMID 22649255 DOI: 10.3945/jn.111.157180  1
2012 Wang X, Miller DC, Clark AG, Antczak DF. Random X inactivation in the mule and horse placenta. Genome Research. 22: 1855-63. PMID 22645258 DOI: 10.1101/gr.138487.112  1
2012 Friston K, Thornton C, Clark A. Free-energy minimization and the dark-room problem. Frontiers in Psychology. 3: 130. PMID 22586414 DOI: 10.3389/fpsyg.2012.00130  1
2012 Chen N, Bellott DW, Page DC, Clark AG. Identification of avian W-linked contigs by short-read sequencing. Bmc Genomics. 13: 183. PMID 22583744 DOI: 10.1186/1471-2164-13-183  1
2012 Keinan A, Clark AG. Recent explosive human population growth has resulted in an excess of rare genetic variants. Science (New York, N.Y.). 336: 740-3. PMID 22582263 DOI: 10.1126/science.1217283  1
2012 Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC. Genome sequencing reveals complex speciation in the Drosophila simulans clade. Genome Research. 22: 1499-511. PMID 22534282 DOI: 10.1101/gr.130922.111  1
2012 Meisel RP, Malone JH, Clark AG. Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Research. 22: 1255-65. PMID 22499666 DOI: 10.1101/gr.132100.111  1
2012 Lu J, Clark AG. Impact of microRNA regulation on variation in human gene expression. Genome Research. 22: 1243-54. PMID 22456605 DOI: 10.1101/gr.132514.111  1
2012 Bentley AR, Kritchevsky SB, Harris TB, Newman AB, Bauer DC, Meibohm B, Clark AG, Cassano PA. Genetic variation in antioxidant enzymes and lung function. Free Radical Biology & Medicine. 52: 1577-83. PMID 22387199 DOI: 10.1016/j.freeradbiomed.2012.02.025  1
2012 Connallon T, Singh ND, Clark AG. Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution. Molecular Biology and Evolution. 29: 1933-42. PMID 22319138 DOI: 10.1093/molbev/mss057  1
2012 Connallon T, Clark AG. A general population genetic framework for antagonistic selection that accounts for demography and recurrent mutation. Genetics. 190: 1477-89. PMID 22298707 DOI: 10.1534/genetics.111.137117  1
2012 Clark A. Dreaming the whole cat: Generative models, predictive processing, and the enactivist conception of perceptual experience Mind. 121: 753-771. DOI: 10.1093/mind/fzs106  1
2012 Clark A, Pritchard D, Vaesen K. Extended cognition and epistemology Philosophical Explorations. 15: 87-90. DOI: 10.1080/13869795.2012.679294  1
2012 Clark A, Chalmers DJ. The extended mind The Extended Mind. 27-42.  1
2012 Clark A. Coupling, constitution, the cognitive kind: A reply to Adams and Aizawa The Extended Mind. 81-99.  1
2012 Clark A. Memento's revenge: The extended mind, extended The Extended Mind. 43-66.  1
2012 Clark A. Connectionism, moral cognition and collaborative problem solving The Arts and the Legal Academy: Beyond Text in Legal Education. 17-35.  1
2012 Clark A, Chalmers DJ. The extended mind | Rozšírená mysel Filozofia. 67: 230-242.  1
2012 Ward R, Clark A, Hargreaves M. What does 'neighbourhood' mean for carers of people with dementia? Journal of Dementia Care. 20: 33-36.  1
2011 Wernimont SM, Clark AG, Stover PJ, Wells MT, Litonjua AA, Weiss ST, Gaziano JM, Tucker KL, Baccarelli A, Schwartz J, Bollati V, Cassano PA. Folate network genetic variation, plasma homocysteine, and global genomic methylation content: a genetic association study. Bmc Medical Genetics. 12: 150. PMID 22103680 DOI: 10.1186/1471-2350-12-150  1
2011 Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. Plos Genetics. 7: e1002340. PMID 22072977 DOI: 10.1371/journal.pgen.1002340  1
2011 Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, Chen Y, Challis D, Clarke L, Ball EV, Cibulskis K, ... ... Clark AG, et al. The functional spectrum of low-frequency coding variation. Genome Biology. 12: R84. PMID 21917140 DOI: 10.1186/gb-2011-12-9-r84  1
2011 Giardina TJ, Beavis A, Clark AG, Fiumera AC. Female influence on pre- and post-copulatory sexual selection and its genetic basis in Drosophila melanogaster. Molecular Ecology. 20: 4098-108. PMID 21902747 DOI: 10.1111/j.1365-294X.2011.05253.x  1
2011 Wang Y, Mehta G, Mayani R, Lu J, Souaiaia T, Chen Y, Clark A, Yoon HJ, Wan L, Evgrafov OV, Knowles JA, Deelman E, Chen T. RseqFlow: workflows for RNA-Seq data analysis. Bioinformatics (Oxford, England). 27: 2598-600. PMID 21795323 DOI: 10.1093/bioinformatics/btr441  0.4
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Clark A, et al. Measurement of dijet azimuthal decorrelations in pp collisions at sqrt(s)=7  TeV. Physical Review Letters. 106: 172002. PMID 21635030 DOI: 10.1103/PhysRevLett.106.172002  0.01
2011 Im KM, Kirchhoff T, Wang X, Green T, Chow CY, Vijai J, Korn J, Gaudet MM, Fredericksen Z, Shane Pankratz V, Guiducci C, Crenshaw A, McGuffog L, Kartsonaki C, Morrison J, ... ... Clark AG, et al. Haplotype structure in Ashkenazi Jewish BRCA1 and BRCA2 mutation carriers. Human Genetics. 130: 685-99. PMID 21597964 DOI: 10.1007/s00439-011-1003-z  0.68
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Clark A, et al. Search for supersymmetry using final states with one lepton, jets, and missing transverse momentum with the ATLAS detector in √s=7 TeV pp collisions. Physical Review Letters. 106: 131802. PMID 21517374 DOI: 10.1103/PhysRevLett.106.131802  0.01
2011 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Search for diphoton events with large missing transverse energy in 7 TeV proton-proton collisions with the ATLAS detector. Physical Review Letters. 106: 121803. PMID 21517301 DOI: 10.1103/PhysRevLett.106.121803  0.01
2010 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Observation of a centrality-dependent dijet asymmetry in lead-lead collisions at sqrt[S(NN)] =2.76 TeV with the ATLAS detector at the LHC. Physical Review Letters. 105: 252303. PMID 21231581 DOI: 10.1103/PhysRevLett.105.252303  0.01
2010 Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Clark A, et al. Search for new particles in two-jet final states in 7 TeV proton-proton collisions with the ATLAS detector at the LHC. Physical Review Letters. 105: 161801. PMID 21230962 DOI: 10.1103/PhysRevLett.105.161801  0.01
2010 Chow CY, Wolfner MF, Clark AG. The genetic basis for male x female interactions underlying variation in reproductive phenotypes of Drosophila. Genetics. 186: 1355-65. PMID 20876561 DOI: 10.1534/genetics.110.123174  1
2010 Hill-Burns EM, Clark AG. Functional regulatory divergence of the innate immune system in interspecific Drosophila hybrids. Molecular Biology and Evolution. 27: 2596-605. PMID 20551040 DOI: 10.1093/molbev/msq146  1
2010 Royal CD, Novembre J, Fullerton SM, Goldstein DB, Long JC, Bamshad MJ, Clark AG. Inferring genetic ancestry: opportunities, challenges, and implications. American Journal of Human Genetics. 86: 661-73. PMID 20466090 DOI: 10.1016/j.ajhg.2010.03.011  1
2010 Larracuente AM, Noor MA, Clark AG. Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura. Molecular Biology and Evolution. 27: 1612-20. PMID 20147437 DOI: 10.1093/molbev/msq045  1
2010 Sackton TB, Lazzaro BP, Clark AG. Genotype and gene expression associations with immune function in Drosophila. Plos Genetics. 6: e1000797. PMID 20066029 DOI: 10.1371/journal.pgen.1000797  1
2010 Lu J, Clark AG. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Research. 20: 212-27. PMID 19948818 DOI: 10.1101/gr.095406.109  1
2009 Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, Marth GT, Hartl DL, Clark AG. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biology and Evolution. 1: 449-65. PMID 20333214 DOI: 10.1093/gbe/evp048  0.88
2009 Hill-Burns EM, Clark AG. X-linked variation in immune response in Drosophila melanogaster. Genetics. 183: 1477-91. PMID 19822734 DOI: 10.1534/genetics.108.093971  1
2009 Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, ... ... Clark AG, et al. Finding the missing heritability of complex diseases. Nature. 461: 747-53. PMID 19812666 DOI: 10.1038/nature08494  1
2009 Andrés AM, Hubisz MJ, Indap A, Torgerson DG, Degenhardt JD, Boyko AR, Gutenkunst RN, White TJ, Green ED, Bustamante CD, Clark AG, Nielsen R. Targets of balancing selection in the human genome. Molecular Biology and Evolution. 26: 2755-64. PMID 19713326 DOI: 10.1093/molbev/msp190  1
2009 Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, Clark AG. Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence. Plos Genetics. 5: e1000592. PMID 19662163 DOI: 10.1371/journal.pgen.1000592  1
2009 Sackton TB, Clark AG. Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. Bmc Genomics. 10: 259. PMID 19500410 DOI: 10.1186/1471-2164-10-259  1
2009 Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, Indap A, Bustamante CD, Clark AG. Darwinian and demographic forces affecting human protein coding genes. Genome Research. 19: 838-49. PMID 19279335 DOI: 10.1101/gr.088336.108  1
2008 Koerich LB, Wang X, Clark AG, Carvalho AB. Low conservation of gene content in the Drosophila Y chromosome. Nature. 456: 949-51. PMID 19011613 DOI: 10.1038/nature07463  0.96
2008 McKean KA, Yourth CP, Lazzaro BP, Clark AG. The evolutionary costs of immunological maintenance and deployment. Bmc Evolutionary Biology. 8: 76. PMID 18315877 DOI: 10.1186/1471-2148-8-76  1
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/j.tig.2007.12.001  1
2008 Singh ND, Larracuente AM, Clark AG. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution. 25: 454-67. PMID 18083702 DOI: 10.1093/molbev/msm275  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/nature06341  1
2007 Sackton TB, Lazzaro BP, Schlenke TA, Evans JD, Hultmark D, Clark AG. Dynamic evolution of the innate immune system in Drosophila. Nature Genetics. 39: 1461-8. PMID 17987029 DOI: 10.1038/ng.2007.60  1
2007 Schlenke TA, Morales J, Govind S, Clark AG. Contrasting infection strategies in generalist and specialist wasp parasitoids of Drosophila melanogaster. Plos Pathogens. 3: 1486-501. PMID 17967061 DOI: 10.1371/journal.ppat.0030158  1
2007 McGraw LA, Fiumera AC, Ramakrishnan M, Madhavarapu S, Clark AG, Wolfner MF. Larval rearing environment affects several post-copulatory traits in Drosophila melanogaster. Biology Letters. 3: 607-10. PMID 17711815 DOI: 10.1098/rsbl.2007.0334  1
2007 Clark A. Re-inventing ourselves: the plasticity of embodiment, sensing, and mind. The Journal of Medicine and Philosophy. 32: 263-82. PMID 17613705 DOI: 10.1080/03605310701397024  1
2007 Huntley MA, Clark AG. Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species. Molecular Biology and Evolution. 24: 2598-609. PMID 17602168 DOI: 10.1093/molbev/msm129  1
2007 Fiumera AC, Dumont BL, Clark AG. Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster. Genetics. 176: 1245-60. PMID 17435238 DOI: 10.1534/genetics.106.064915  1
2006 Montooth KL, Siebenthall KT, Clark AG. Membrane lipid physiology and toxin catabolism underlie ethanol and acetic acid tolerance in Drosophila melanogaster. The Journal of Experimental Biology. 209: 3837-50. PMID 16985200 DOI: 10.1242/jeb.02448  1
2006 Lazzaro BP, Sackton TB, Clark AG. Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria. Genetics. 174: 1539-54. PMID 16888344 DOI: 10.1534/genetics.105.054593  1
2006 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of bottom-quark hadron masses in exclusive J/psi decays with the CDF detector. Physical Review Letters. 96: 202001. PMID 16803166 DOI: 10.1103/PhysRevLett.96.202001  0.44
2006 Fiumera AC, Dumont BL, Clark AG. Natural variation in male-induced 'cost-of-mating' and allele-specific association with male reproductive genes in Drosophila melanogaster. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 355-61. PMID 16612893 DOI: 10.1098/rstb.2005.1791  1
2006 Bachtrog D, Thornton K, Clark A, Andolfatto P. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution; International Journal of Organic Evolution. 60: 292-302. PMID 16610321 DOI: 10.1554/05-337.1  1
2006 Wilson GM, Flibotte S, Missirlis PI, Marra MA, Jones S, Thornton K, Clark AG, Holt RA. Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla. Genome Research. 16: 173-81. PMID 16365383 DOI: 10.1101/gr.4456006  1
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the cross section for prompt diphoton production in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 95: 022003. PMID 16090675  0.44
2005 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Measurement of dijet azimuthal decorrelations at central rapidities in pp collisions at sqrt s =1.96 TeV. Physical Review Letters. 94: 221801. PMID 16090381  0.44
2005 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Measurement of partial widths and search for direct CP violation in D0 meson decays to K-K+ and pi-pi+. Physical Review Letters. 94: 122001. PMID 15903906  0.44
2005 Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, Hubisz MJ, Fledel-Alon A, Tanenbaum DM, Civello D, White TJ, J Sninsky J, Adams MD, Cargill M. A scan for positively selected genes in the genomes of humans and chimpanzees. Plos Biology. 3: e170. PMID 15869325 DOI: 10.1371/journal.pbio.0030170  1
2005 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Search for supersymmetry with gauge-mediated breaking in diphoton events at D0. Physical Review Letters. 94: 041801. PMID 15783547 DOI: 10.1103/PhysRevLett.94.041801  0.96
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Measurement of the lifetime difference between Bs mass eigenstates. Physical Review Letters. 94: 101803. PMID 15783473  0.44
2005 Acosta D, Adelman J, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, ... ... Clark AG, et al. Search for excited and exotic electrons in the egamma decay channel in pp collisions at sqrt[s] = 1.96 TeV. Physical Review Letters. 94: 101802. PMID 15783472  0.44
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... Clark AG, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/gr.3059305  1
2005 Carvalho AB, Clark AG. Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y. Science (New York, N.Y.). 307: 108-10. PMID 15528405 DOI: 10.1126/science.1101675  0.88
2005 Zhang M, Montooth KL, Wells MT, Clark AG, Zhang D. Mapping multiple Quantitative Trait Loci by Bayesian classification. Genetics. 169: 2305-18. PMID 15520261 DOI: 10.1534/genetics.104.034181  1
2005 Fiumera AC, Dumont BL, Clark AG. Sperm competitive ability in Drosophila melanogaster associated with variation in male reproductive proteins. Genetics. 169: 243-57. PMID 15466425 DOI: 10.1534/genetics.104.032870  1
2004 Acosta D, Affolder T, Akimoto T, Albrow MG, Ambrose D, Amerio S, Amidei D, Anastassov A, Anikeev K, Annovi A, Antos J, Aoki M, Apollinari G, Arisawa T, Arguin JF, ... ... Clark AG, et al. Search for doubly charged Higgs bosons decaying to dileptons in pp collisions at square root of s=1.96 TeV. Physical Review Letters. 93: 221802. PMID 15601082  0.04
2004 Abazov VM, Abbott B, Abolins M, Acharya BS, Adams DL, Adams M, Adams T, Agelou M, Agram JL, Ahmed SN, Ahn SH, Alexeev GD, Alkhazov G, Alton A, Alverson G, ... ... Clark AR, et al. Search for doubly charged higgs boson pair production in the decay to mu(+)mu(+)mu(-)mu(-) in pp collisions at sqrt[s]=1.96 TeV. Physical Review Letters. 93: 141801. PMID 15524781  0.44
2004 Lazzaro BP, Sceurman BK, Clark AG. Genetic basis of natural variation in D. melanogaster antibacterial immunity. Science (New York, N.Y.). 303: 1873-6. PMID 15031506 DOI: 10.1126/science.1092447  1
2004 Spencer HG, Feldman MW, Clark AG, Weisstein AE. The effect of genetic conflict on genomic imprinting and modification of expression at a sex-linked locus. Genetics. 166: 565-79. PMID 15020445 DOI: 10.1534/genetics.166.1.565  1
2003 Zhou X, Wang X, Dougherty ER. Missing-value estimation using linear and non-linear regression with Bayesian gene selection. Bioinformatics (Oxford, England). 19: 2302-7. PMID 14630659  0.56
2003 Montooth KL, Marden JH, Clark AG. Mapping determinants of variation in energy metabolism, respiration and flight in Drosophila. Genetics. 165: 623-35. PMID 14573475  1
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  1
2003 Lazzaro BP, Clark AG. Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster. Molecular Biology and Evolution. 20: 914-23. PMID 12716986 DOI: 10.1093/molbev/msg109  1
2003 Dermitzakis ET, Bergman CM, Clark AG. Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites. Molecular Biology and Evolution. 20: 703-14. PMID 12679540 DOI: 10.1093/molbev/msg077  1
2002 Lazzaro BP, Sceurman BK, Carney SL, Clark AG. fRFLP and fAFLP: medium-throughput genotyping by fluorescently post-labeling restriction digestion. Biotechniques. 33: 539-40, 542, 545-6. PMID 12238764  1
2002 Civetta A, Waldrip-Dail HM, Clark AG. An introgression approach to mapping differences in mating success and sperm competitive ability in Drosophila simulans and D. sechellia. Genetical Research. 79: 65-74. PMID 11974604 DOI: 10.1017/S0016672301005419  1
2001 Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 98: 13225-30. PMID 11687639 DOI: 10.1073/pnas.231484998  0.88
2001 Lazzaro BP, Clark AG. Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster. Genetics. 159: 659-71. PMID 11606542  1
2001 Tishkoff SA, Varkonyi R, Cahinhinan N, Abbes S, Argyropoulos G, Destro-Bisol G, Drousiotou A, Dangerfield B, Lefranc G, Loiselet J, Piro A, Stoneking M, Tagarelli A, Tagarelli G, Touma EH, ... ... Clark AG, et al. Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance. Science (New York, N.Y.). 293: 455-62. PMID 11423617 DOI: 10.1126/science.1061573  1
2000 Civetta A, Clark AG. Correlated effects of sperm competition and postmating female mortality. Proceedings of the National Academy of Sciences of the United States of America. 97: 13162-5. PMID 11078508 DOI: 10.1073/pnas.230305397  1
2000 Carvalho AB, Lazzaro BP, Clark AG. Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proceedings of the National Academy of Sciences of the United States of America. 97: 13239-44. PMID 11069293 DOI: 10.1073/pnas.230438397  1
2000 Tishkoff SA, Pakstis AJ, Stoneking M, Kidd JR, Destro-Bisol G, Sanjantila A, Lu RB, Deinard AS, Sirugo G, Jenkins T, Kidd KK, Clark AG. Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins. American Journal of Human Genetics. 67: 901-25. PMID 10986042 DOI: 10.1086/303068  1
2000 Clark AG, Dermitzakis ET, Civetta A. Nontransitivity of sperm precedence in Drosophila. Evolution; International Journal of Organic Evolution. 54: 1030-5. PMID 10937275  1
2000 Civetta A, Clark AG. Chromosomal effects on male and female components of sperm precedence in Drosophila. Genetical Research. 75: 143-51. PMID 10816972 DOI: 10.1017/S0016672399004292  1
2000 Clark AG, Civetta A. Evolutionary biology. Protamine wars. Nature. 403: 261, 263. PMID 10659834 DOI: 10.1038/35002236  1
1999 Carvalho AB, Clark AG. Intron size and natural selection. Nature. 401: 344. PMID 10517631 DOI: 10.1038/43827  0.88
1999 Spencer HG, Clark AG, Feldman MW. Genetic conflicts and the evolutionary origin of genomic imprinting. Trends in Ecology & Evolution. 14: 197-201. PMID 10322534  1
1998 Spencer HG, Feldman MW, Clark AG. Genetic conflicts, multiple paternity and the evolution of genomic imprinting. Genetics. 148: 893-904. PMID 9504935  1
1997 Thomas GH, Newbern EC, Korte CC, Bales MA, Muse SV, Clark AG, Kiehart DP. Intragenic duplication and divergence in the spectrin superfamily of proteins. Molecular Biology and Evolution. 14: 1285-95. PMID 9402739  1
1997 Muse SV, Clark AG, Thomas GH. Comparisons of the nucleotide substitution process among repetitive segments of the alpha- and beta-spectrin genes. Journal of Molecular Evolution. 44: 492-500. PMID 9115173 DOI: 10.1007/PL00006173  1
1996 Clark AG, Leicht BG, Muse SV. Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Molecular Biology and Evolution. 13: 471-82. PMID 8742636  1
1995 Clark AG, Aguadé M, Prout T, Harshman LG, Langley CH. Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster. Genetics. 139: 189-201. PMID 7705622  1
1995 Leicht BG, Muse SV, Hanczyc M, Clark AG. Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics. 139: 299-308. PMID 7535717  1
1995 Goldstein DB, Clark AG. Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Research. 23: 3882-6. PMID 7479031  0.56
1994 Clark AG, Silveria S, Meyers W, Langley CH. Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions. Proceedings of the National Academy of Sciences of the United States of America. 91: 719-22. PMID 8290588  1
1986 Clark AG, Feldman MW. A numerical simulation of the one-locus, multiple-allele fertility model. Genetics. 113: 161-76. PMID 3710142  1
1986 Teague BD, Clark AG, Doane WW. Developmental analysis of lipids from wild-type and adipose60 mutants of Drosophila melanogaster. The Journal of Experimental Zoology. 240: 95-104. PMID 3095486 DOI: 10.1002/jez.1402400112  1
1983 Clark AG, Doane WW. Desiccation tolerance of the adipose60 mutant of Drosophila melanogaster. Hereditas. 99: 165-75. PMID 6421774  1
1981 Clark AG, Feldman MW. Density-Dependent Fertility Selection in Experimental Populations of DROSOPHILA MELANOGASTER. Genetics. 98: 849-69. PMID 17249109  1
1981 Clark AG, Feldman MW. Disequilibrium between linked inversions: an alternative hypothesis. Heredity. 46: 379-90. PMID 6792164  1
1981 Clark AG, Feldman MW. The estimation of epistasis in components of fitness in experimental populations of drosophila melanogaster II. Assessment of meiotic drive, viability, fecundity and sexual selection. Heredity. 46: 347-77. PMID 6792163  1
1981 Clark AG, Feldman MW, Christiansen FB. The estimation of epistasis in components of fitness in experimental populations of Drosophila melanogaster I. A two-stage maximum likelihood model. Heredity. 46: 321-46. PMID 6792162  1
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