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Graeme C. McAlister, Ph.D. - Publications

Affiliations: 
2009 University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry & Proteomics
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shuken SR, McAlister GC, Barshop WD, Canterbury JD, Bergen D, Huang J, Huguet R, Paulo JA, Zabrouskov V, Gygi SP, Yu Q. Deep Proteomic Compound Profiling with the Orbitrap Ascend Tribrid Mass Spectrometer Using Tandem Mass Tags and Real-Time Search. Analytical Chemistry. 95: 15180-15188. PMID 37811788 DOI: 10.1021/acs.analchem.3c01701  0.361
2023 He Y, Shishkova E, Peters-Clarke TM, Brademan DR, Westphall MS, Bergen D, Huang J, Huguet R, Senko MW, Zabrouskov V, McAlister GC, Coon JJ. Evaluation of the Orbitrap Ascend Tribrid Mass Spectrometer for Shotgun Proteomics. Analytical Chemistry. PMID 37389810 DOI: 10.1021/acs.analchem.3c01155  0.738
2023 Brademan DR, Overmyer KA, He Y, Barshop WD, Canterbury JD, Bills BJ, Anderson BJ, Hutchins PD, Sharma S, Zabrouskov V, McAlister GC, Coon JJ. Improved Structural Characterization of Glycerophospholipids and Sphingomyelins with Real-Time Library Searching. Analytical Chemistry. PMID 37172325 DOI: 10.1021/acs.analchem.2c04633  0.588
2022 Lee KW, Peters-Clarke TM, Mertz KL, McAlister GC, Syka JEP, Westphall MS, Coon JJ. Infrared Photoactivation Boosts Reporter Ion Yield in Isobaric Tagging. Analytical Chemistry. 94: 3328-3334. PMID 35142486 DOI: 10.1021/acs.analchem.1c05398  0.687
2021 Gaun A, Lewis Hardell KN, Olsson N, O'Brien JJ, Gollapudi S, Smith M, McAlister G, Huguet R, Keyser R, Buffenstein R, McAllister FE. Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and Mice. Journal of Proteome Research. PMID 33499602 DOI: 10.1021/acs.jproteome.0c00681  0.325
2020 Gault J, Liko I, Landreh M, Shutin D, Bolla JR, Jefferies D, Agasid M, Yen HY, Ladds MJGW, Lane DP, Khalid S, Mullen C, Remes PM, Huguet R, McAlister G, et al. Combining native and 'omics' mass spectrometry to identify endogenous ligands bound to membrane proteins. Nature Methods. 17: 505-508. PMID 32371966 DOI: 10.1038/S41592-020-0821-0  0.336
2020 Yu Q, Paulo JA, Navarrete-Perea J, McAlister GC, Canterbury JD, Bailey DJ, Robitaille AM, Huguet R, Zabrouskov V, Gygi SP, Schweppe DK. Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics. Analytical Chemistry. PMID 32250601 DOI: 10.1021/Acs.Analchem.9B05685  0.668
2020 Schweppe DK, Prasad S, Belford MW, Navarrete-Perea J, Bailey DJ, Huguet R, Jedrychowski MP, Rad R, McAlister G, Abbatiello SE, Wouters ER, Zabrouskov V, Dunyach JJ, Paulo JA, Gygi SP. Correction to Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry. Analytical Chemistry. PMID 32134636 DOI: 10.1021/acs.analchem.0c00888  0.69
2020 McGee JP, Melani RD, Goodwin M, McAlister G, Huguet R, Senko MW, Compton PD, Kelleher NL. Voltage Rollercoaster Filtering of Low-Mass Contaminants During Native Protein Analysis. Journal of the American Society For Mass Spectrometry. 31: 763-767. PMID 32126774 DOI: 10.1021/Jasms.9B00037  0.512
2020 Erickson BK, Schweppe DK, Yu Q, Rad R, Haas W, McAlister GC, Gygi SP. Parallel notched gas-phase enrichment for improved proteome identification and quantitation with fast spectral acquisition rates. Journal of Proteome Research. PMID 31990573 DOI: 10.1021/Acs.Jproteome.9B00715  0.45
2019 Schweppe DK, Prasad S, Belford MW, Navarrete-Perea J, Bailey D, Huguet R, Jedrychowski MP, Rad R, McAlister G, Abbatiello SE, Woulters ER, Zabrouskov V, Dunyach JJ, Paulo JA, Gygi SP. Characterization and optimization of multiplexed quantitative analyses using high-field asymmetric-waveform ion mobility mass spectrometry. Analytical Chemistry. PMID 30672687 DOI: 10.1021/Acs.Analchem.8B05399  0.757
2018 Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ. Rapid and Comprehensive Single Shot Proteomics with LC-FAIMS-MS/MS. Analytical Chemistry. PMID 29969236 DOI: 10.1021/Acs.Analchem.8B02233  0.83
2017 Hebert AS, Thoeing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ. Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical Chemistry. PMID 29272103 DOI: 10.1021/Acs.Analchem.7B04808  0.837
2016 Erickson BK, Rose CM, Braun CR, Erickson AR, Knott J, McAlister GC, Wühr M, Paulo JA, Everley RA, Gygi SP. A Strategy to Combine Sample Multiplexing with Targeted Proteomics Assays for High-Throughput Protein Signature Characterization. Molecular Cell. PMID 28065596 DOI: 10.1016/J.Molcel.2016.12.005  0.455
2015 Wühr M, Güttler T, Peshkin L, McAlister GC, Sonnett M, Ishihara K, Groen AC, Presler M, Erickson BK, Mitchison TJ, Kirschner MW, Gygi SP. The Nuclear Proteome of a Vertebrate. Current Biology : Cb. 25: 2663-71. PMID 26441354 DOI: 10.1016/J.Cub.2015.08.047  0.322
2015 Erickson BK, Jedrychowski MP, McAlister GC, Everley RA, Kunz R, Gygi SP. Evaluating multiplexed quantitative phosphopeptide analysis on a hybrid quadrupole mass filter/linear ion trap/orbitrap mass spectrometer. Analytical Chemistry. 87: 1241-9. PMID 25521595 DOI: 10.1021/Ac503934F  0.612
2014 McAlister GC, Nusinow DP, Jedrychowski MP, Wühr M, Huttlin EL, Erickson BK, Rad R, Haas W, Gygi SP. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Analytical Chemistry. 86: 7150-8. PMID 24927332 DOI: 10.1021/Ac502040V  0.557
2013 Ledvina AR, Rose CM, McAlister GC, Syka JE, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ. Activated ion ETD performed in a modified collision cell on a hybrid QLT-Oribtrap mass spectrometer. Journal of the American Society For Mass Spectrometry. 24: 1623-33. PMID 23677544 DOI: 10.1007/S13361-013-0621-1  0.85
2013 Rose CM, Russell JD, Ledvina AR, McAlister GC, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ, Syka JE. Multipurpose dissociation cell for enhanced ETD of intact protein species. Journal of the American Society For Mass Spectrometry. 24: 816-27. PMID 23609185 DOI: 10.1007/S13361-013-0622-0  0.84
2012 Wühr M, Haas W, McAlister GC, Peshkin L, Rad R, Kirschner MW, Gygi SP. Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster. Analytical Chemistry. 84: 9214-21. PMID 23098179 DOI: 10.1021/Ac301962S  0.677
2012 McAlister GC, Huttlin EL, Haas W, Ting L, Jedrychowski MP, Rogers JC, Kuhn K, Pike I, Grothe RA, Blethrow JD, Gygi SP. Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses. Analytical Chemistry. 84: 7469-78. PMID 22880955 DOI: 10.1021/Ac301572T  0.591
2012 Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/Pnas.1205292109  0.799
2012 Ledvina AR, Lee MV, McAlister GC, Westphall MS, Coon JJ. Infrared multiphoton dissociation for quantitative shotgun proteomics. Analytical Chemistry. 84: 4513-9. PMID 22480380 DOI: 10.1021/Ac300367P  0.841
2012 McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 84: 2875-82. PMID 22335612 DOI: 10.1021/Ac203430U  0.839
2012 Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/S13361-011-0331-5  0.825
2011 Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/Nmeth.1716  0.773
2011 McAlister GC, Phanstiel DH, Brumbaugh J, Westphall MS, Coon JJ. Higher-energy collision-activated dissociation without a dedicated collision cell. Molecular & Cellular Proteomics : McP. 10: O111.009456. PMID 21393638 DOI: 10.1074/Mcp.O111.009456  0.854
2010 Ledvina AR, Beauchene NA, McAlister GC, Syka JE, Schwartz JC, Griep-Raming J, Westphall MS, Coon JJ. Activated-ion electron transfer dissociation improves the ability of electron transfer dissociation to identify peptides in a complex mixture. Analytical Chemistry. 82: 10068-74. PMID 21062032 DOI: 10.1021/Ac1020358  0.84
2010 Peterson AC, McAlister GC, Quarmby ST, Griep-Raming J, Coon JJ. Development and characterization of a GC-enabled QLT-Orbitrap for high-resolution and high-mass accuracy GC/MS. Analytical Chemistry. 82: 8618-28. PMID 20815337 DOI: 10.1021/Ac101757M  0.744
2010 Wenger CD, McAlister GC, Xia Q, Coon JJ. Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Molecular & Cellular Proteomics : McP. 9: 754-63. PMID 20124352 DOI: 10.1074/Mcp.M900541-Mcp200  0.818
2010 McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ. Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Analytical Chemistry. 82: 316-22. PMID 19938823 DOI: 10.1021/Ac902005S  0.829
2009 Ledvina AR, McAlister GC, Gardner MW, Smith SI, Madsen JA, Schwartz JC, Stafford GC, Syka JE, Brodbelt JS, Coon JJ. Infrared photoactivation reduces peptide folding and hydrogen-atom migration following ETD tandem mass spectrometry. Angewandte Chemie (International Ed. in English). 48: 8526-8. PMID 19795429 DOI: 10.1002/Anie.200903557  0.849
2009 Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ. Post-acquisition ETD spectral processing for increased peptide identifications. Journal of the American Society For Mass Spectrometry. 20: 1435-40. PMID 19362853 DOI: 10.1016/J.Jasms.2009.03.006  0.841
2009 Phanstiel D, Unwin R, McAlister GC, Coon JJ. Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Analytical Chemistry. 81: 1693-8. PMID 19154110 DOI: 10.1021/Ac8019202  0.818
2008 McAlister GC, Kiessel SE, Coon JJ. In vacuo formation of peptide-metal coordination complexes. International Journal of Mass Spectrometry. 276: 149-152. PMID 19424441 DOI: 10.1016/J.Ijms.2008.05.001  0.671
2008 Swaney DL, McAlister GC, Coon JJ. Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nature Methods. 5: 959-64. PMID 18931669 DOI: 10.1038/Nmeth.1260  0.821
2008 McAlister GC, Berggren WT, Griep-Raming J, Horning S, Makarov A, Phanstiel D, Stafford G, Swaney DL, Syka JE, Zabrouskov V, Coon JJ. A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer. Journal of Proteome Research. 7: 3127-36. PMID 18613715 DOI: 10.1021/Pr800264T  0.863
2008 Hubler SL, Jue A, Keith J, McAlister GC, Craciun G, Coon JJ. Valence parity renders z(*)-type ions chemically distinct. Journal of the American Chemical Society. 130: 6388-94. PMID 18444621 DOI: 10.1021/Ja7099985  0.668
2008 Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ. Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 4093-8. PMID 18326628 DOI: 10.1073/Pnas.0710515105  0.755
2007 Williams DK, McAlister GC, Good DM, Coon JJ, Muddiman DC. Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 7916-9. PMID 17867655 DOI: 10.1021/Ac071444H  0.725
2007 Good DM, Wirtala M, McAlister GC, Coon JJ. Performance characteristics of electron transfer dissociation mass spectrometry. Molecular & Cellular Proteomics : McP. 6: 1942-51. PMID 17673454 DOI: 10.1074/Mcp.M700073-Mcp200  0.709
2007 McAlister GC, Phanstiel D, Good DM, Berggren WT, Coon JJ. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer. Analytical Chemistry. 79: 3525-34. PMID 17441688 DOI: 10.1021/Ac070020K  0.846
2007 Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JE, Coon JJ. Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Analytical Chemistry. 79: 477-85. PMID 17222010 DOI: 10.1021/Ac061457F  0.808
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