Martin Kreitman - Related publications

Ecology and Evolution University of Chicago, Chicago, IL 
Molecular population genetics, genetics of speciation
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/journal.pgen.1007900   
2019 Amei A, Zhou S. Inferring the distribution of selective effects from a time inhomogeneous model. Plos One. 14: e0194709. PMID 30657757 DOI: 10.1371/journal.pone.0194709   
2019 Arguello JR, Laurent S, Clark AG. Demographic history of the human commensal Drosophila melanogaster. Genome Biology and Evolution. PMID 30715331 DOI: 10.1093/gbe/evz022   
2019 Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R, Schlötterer C. Genetic redundancy fuels polygenic adaptation in Drosophila. Plos Biology. 17: e3000128. PMID 30716062 DOI: 10.1371/journal.pbio.3000128   
2019 Bamba M, Kawaguchi YW, Tsuchimatsu T. Plant adaptation and speciation studied by population genomic approaches. Development, Growth & Differentiation. 61: 12-24. PMID 30474212 DOI: 10.1111/dgd.12578   
2019 Lai YT, Yeung CKL, Omland KE, Pang EL, Hao Y, Liao BY, Cao HF, Zhang BW, Yeh CF, Hung CM, Hung HY, Yang MY, Liang W, Hsu YC, Yao CT, et al. Standing genetic variation as the predominant source for adaptation of a songbird. Proceedings of the National Academy of Sciences of the United States of America. PMID 30659151 DOI: 10.1073/pnas.1813597116   
2019 Feng S, Fang Q, Barnett R, Li C, Han S, Kuhlwilm M, Zhou L, Pan H, Deng Y, Chen G, Gamauf A, Woog F, Prys-Jones R, Marques-Bonet T, Gilbert MTP, et al. The Genomic Footprints of the Fall and Recovery of the Crested Ibis. Current Biology : Cb. PMID 30639104 DOI: 10.1016/j.cub.2018.12.008   
2019 Bell KL, Nice CC, Hulsey CD. Population Genomic Evidence Reveals Subtle Patterns of Differentiation in the Trophically Polymorphic Cuatro Ciénegas Cichlid, Herichthys minckleyi. The Journal of Heredity. PMID 30657932 DOI: 10.1093/jhered/esz004   
2019 López ME, Benestan L, Moore JS, Perrier C, Gilbey J, Di Genova A, Maass A, Diaz D, Lhorente JP, Correa K, Neira R, Bernatchez L, Yáñez JM. Comparing genomic signatures of domestication in two Atlantic salmon ( L.) populations with different geographical origins. Evolutionary Applications. 12: 137-156. PMID 30622641 DOI: 10.1111/eva.12689   
2019 Allier A, Teyssèdre S, Lehermeier C, Claustres B, Maltese S, Melkior S, Moreau L, Charcosset A. Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30666392 DOI: 10.1007/s00122-019-03280-w   
2019 Karam MJ, Souleman D, Schvartzman MS, Gallina S, Spielmann J, Poncet C, Bouchez O, Pauwels M, Hanikenne M, Frérot H. Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri. Heredity. PMID 30670845 DOI: 10.1038/s41437-019-0184-4   
2019 Miller SE, Roesti M, Schluter D. A Single Interacting Species Leads to Widespread Parallel Evolution of the Stickleback Genome. Current Biology : Cb. PMID 30686736 DOI: 10.1016/j.cub.2018.12.044   
2019 Choudhury RR, Rogivue A, Gugerli F, Parisod C. Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes. Molecular Ecology. PMID 30633406 DOI: 10.1111/mec.15014   
2019 Lillie M, Honaker CF, Siegel PB, Carlborg Ö. Bidirectional Selection for Body Weight on Standing Genetic Variation in a Chicken Model. G3 (Bethesda, Md.). PMID 30737239 DOI: 10.1534/g3.119.400038   
2019 Stephan W. Selective Sweeps. Genetics. 211: 5-13. PMID 30626638 DOI: 10.1534/genetics.118.301319   
2019 Wybouw N, Kosterlitz O, Kurlovs AH, Bajda S, Greenhalgh R, Snoeck S, Bui H, Bryon A, Dermauw W, Van Leeuwen T, Clark RM. Long-Term Population Studies Uncover the Genome Structure and Genetic Basis of Xenobiotic and Host Plant Adaptation in the Herbivore . Genetics. PMID 30745439 DOI: 10.1534/genetics.118.301803   
2019 Leimar O, Dall SRX, McNamara JM, Kuijper B, Hammerstein P. Ecological Genetic Conflict: Genetic Architecture Can Shift the Balance between Local Adaptation and Plasticity. The American Naturalist. 193: 70-80. PMID 30624104 DOI: 10.1086/700719   
2019 McLennan EA, Wright BR, Belov K, Hogg CJ, Grueber CE. Too much of a good thing? Finding the most informative genetic dataset to answer conservation questions. Molecular Ecology Resources. PMID 30681296 DOI: 10.1111/1755-0998.12997   
2019 Cavedon M, Goubili C, Heppenheimer E, vonHoldt B, Mariani S, Hebblewhite M, Hegel T, Hervieux D, Serrouya R, Steenweg R, Weckworth BV, Musiani M. Genomics, environment and balancing selection in behaviorally bimodal populations: the caribou case. Molecular Ecology. PMID 30714247 DOI: 10.1111/mec.15039   
2019 Al-Asadi H, Petkova D, Stephens M, Novembre J. Estimating recent migration and population-size surfaces. Plos Genetics. 15: e1007908. PMID 30640906 DOI: 10.1371/journal.pgen.1007908   
2019 Alves JM, Carneiro M, Cheng JY, Lemos de Matos A, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso S, Bell DJ, Belmont L, et al. Parallel adaptation of rabbit populations to myxoma virus. Science (New York, N.Y.). PMID 30765607 DOI: 10.1126/science.aau7285   
2019 Armstrong A, Anderson NW, Blackmon H. Inferring the potentially complex genetic architectures of adaptation, sexual dimorphism, and genotype by environment interactions by partitioning of mean phenotypes. Journal of Evolutionary Biology. PMID 30698300 DOI: 10.1111/jeb.13421   
2019 Vasylenko L, Feldman MW, Papadimitriou C, Livnat A. Sex: The power of randomization. Theoretical Population Biology. PMID 30638926 DOI: 10.1016/j.tpb.2018.11.005   
2019 Stajic D, Perfeito L, Jansen LET. Epigenetic gene silencing alters the mechanisms and rate of evolutionary adaptation. Nature Ecology & Evolution. PMID 30718851 DOI: 10.1038/s41559-018-0781-2   
2019 Morris J, Navarro N, Rastas P, Rawlins LD, Sammy J, Mallet J, Dasmahapatra KK. The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution. Heredity. PMID 30670842 DOI: 10.1038/s41437-018-0180-0   
2019 Connallon T, Chenoweth SF. Dominance reversals and the maintenance of genetic variation for fitness. Plos Biology. 17: e3000118. PMID 30695026 DOI: 10.1371/journal.pbio.3000118   
2019 Zhao L, Illingworth CJR. Measurements of intrahost viral diversity require an unbiased diversity metric. Virus Evolution. 5: vey041. PMID 30723551 DOI: 10.1093/ve/vey041   
2019 Yadav MK, Aravindan S, Ngangkham U, Raghu S, Prabhukarthikeyan SR, Keerthana U, Marndi BC, Adak T, Munda S, Deshmukh R, Pramesh D, Samantaray S, Rath PC. Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers. Plos One. 14: e0211061. PMID 30673751 DOI: 10.1371/journal.pone.0211061   
2019 Whelan NV, Galaska MP, Sipley BN, Weber JM, Johnson PD, Halanych KM, Helms BS. Riverscape genetic variation, migration patterns, and morphological variation of the threatened Round Rocksnail, Leptoxis ampla. Molecular Ecology. PMID 30697854 DOI: 10.1111/mec.15032   
2019 Garud NR, Good BH, Hallatschek O, Pollard KS. Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. Plos Biology. 17: e3000102. PMID 30673701 DOI: 10.1371/journal.pbio.3000102   
2019 Nadachowska-Brzyska K, Burri R, Ellegren H. Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers. Molecular Ecology. PMID 30653779 DOI: 10.1111/mec.15021   
2019 Ahmed P H, V V, More RP, Viswanath B, Jain S, Rao MS, Mukherjee O, . INDEX-db: The Indian Exome Reference Database (Phase I). Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30615482 DOI: 10.1089/cmb.2018.0199   
2019 Yang S, Xue S, Kang W, Qian Z, Yi Z. Genetic diversity and population structure of Miscanthus lutarioriparius, an endemic plant of China. Plos One. 14: e0211471. PMID 30707722 DOI: 10.1371/journal.pone.0211471   
2019 Barth JMI, Villegas-Ríos D, Freitas C, Moland E, Star B, André C, Knutsen H, Bradbury I, Dierking J, Petereit C, Righton D, Metcalfe J, Jakobsen KS, Olsen EM, Jentoft S. Disentangling structural genomic and behavioral barriers in a sea of connectivity. Molecular Ecology. PMID 30633410 DOI: 10.1111/mec.15010   
2019 Jones AG, Arnold SJ, Bürger R. The Effects of Epistasis and Pleiotropy on Genome-Wide Scans for Adaptive Outlier Loci. The Journal of Heredity. PMID 30715354 DOI: 10.1093/jhered/esz007   
2019 Merrill RM, Rastas P, Martin SH, Melo MC, Barker S, Davey J, McMillan WO, Jiggins CD. Genetic dissection of assortative mating behavior. Plos Biology. 17: e2005902. PMID 30730873 DOI: 10.1371/journal.pbio.2005902   
2019 Billerman SM, Cicero C, Bowie RCK, Carling MD. Phenotypic and Genetic Introgression Across a Moving Woodpecker Hybrid Zone. Molecular Ecology. PMID 30739372 DOI: 10.1111/mec.15043   
2019 Rane RV, Pearce SL, Li F, Coppin C, Schiffer M, Shirriffs J, Sgrò CM, Griffin PC, Zhang G, Lee SF, Hoffmann AA, Oakeshott JG. Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species. Bmc Genomics. 20: 52. PMID 30651071 DOI: 10.1186/s12864-018-5413-3   
2019 Wang H, Chai Z, Hu D, Ji Q, Xin J, Zhang C, Zhong J. A global analysis of CNVs in diverse yak populations using whole-genome resequencing. Bmc Genomics. 20: 61. PMID 30658572 DOI: 10.1186/s12864-019-5451-5   
2019 Gurinovich A, Bae H, Farrell JJ, Andersen SL, Monti S, Puca A, Atzmon G, Barzilai N, Perls TT, Sebastiani P. PopCluster: an algorithm to identify genetic variants with ethnicity-dependent effects. Bioinformatics (Oxford, England). PMID 30624692 DOI: 10.1093/bioinformatics/btz017   
2019 Uyenoyama MK, Takebayashi N, Kumagai S. Inductive determination of allele frequency spectrum probabilities in structured populations. Theoretical Population Biology. PMID 30641073 DOI: 10.1016/j.tpb.2018.10.004   
2019 Groh JS, Percy DM, Björk CR, Cronk QCB. On the origin of orphan hybrids between and . Aob Plants. 11: ply071. PMID 30687492 DOI: 10.1093/aobpla/ply071   
2019 Vidal Elgueta A, Hinojosa LF, Pérez MF, Peralta G, Rodríguez MU. Genetic and phenotypic diversity in 2000 years old maize (Zea mays L.) samples from the Tarapacá region, Atacama Desert, Chile. Plos One. 14: e0210369. PMID 30699124 DOI: 10.1371/journal.pone.0210369   
2019 Acosta JJ, Fahrenkrog AM, Neves LG, Resende MFR, Dervinis C, Davis JM, Holliday JA, Kirst M. Exome re-sequencing reveals evolutionary history, genomic diversity, and targets of selection in the conifers Pinus taeda and Pinus elliottii. Genome Biology and Evolution. PMID 30689841 DOI: 10.1093/gbe/evz016   
2019 Liu D, Horvath D, Li P, Liu W. RNA Sequencing Characterizes Transcriptomes Differences in Cold Response Between Northern and Southern and Highlight Adaptations Associated With Northward Expansion. Frontiers in Plant Science. 10: 24. PMID 30761169 DOI: 10.3389/fpls.2019.00024   
2019 Carja O, Plotkin JB. Evolutionary Rescue Through Partly Heritable Phenotypic Variability. Genetics. PMID 30696715 DOI: 10.1534/genetics.118.301758   
2019 Quina AS, Durão AF, Muñoz-Muñoz F, Ventura J, da Luz Mathias M. Population effects of heavy metal pollution in wild Algerian mice (Mus spretus). Ecotoxicology and Environmental Safety. 171: 414-424. PMID 30639867 DOI: 10.1016/j.ecoenv.2018.12.062   
2019 Natri HM, Merilä J, Shikano T. The evolution of sex determination associated with a chromosomal inversion. Nature Communications. 10: 145. PMID 30635564 DOI: 10.1038/s41467-018-08014-y   
2019 Bolívar P, Guéguen L, Duret L, Ellegren H, Mugal CF. GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes. Genome Biology. 20: 5. PMID 30616647 DOI: 10.1186/s13059-018-1613-z   
2019 Sarkar D, Kundu A, Das D, Chakraborty A, Mandal NA, Satya P, Karmakar PG, Kar CS, Mitra J, Singh NK. Resolving population structure and genetic differentiation associated with RAD-SNP loci under selection in tossa jute (Corchorus olitorius L.). Molecular Genetics and Genomics : Mgg. PMID 30604071 DOI: 10.1007/s00438-018-1526-2