Patrick O'Grady - Publications

University of California, Berkeley, Berkeley, CA 
Drosophila evolution

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.


Year Citation  Score
2018 O'Grady PM, DeSalle R. Phylogeny of the Genus . Genetics. 209: 1-25. PMID 29716983 DOI: 10.1534/genetics.117.300583  1
2018 O'Grady P, DeSalle R. Hawaiian Drosophila as an Evolutionary Model Clade: Days of Future Past. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1700246. PMID 29603298 DOI: 10.1002/bies.201700246  1
2016 Goodman KR, Evenhuis N, Bartošová-Sojková P, O'Grady PM. Multiple, independent colonizations of the Hawaiian Archipelago by the family Dolichopodidae (Diptera). Peerj. 4: e2704. PMID 27896033 DOI: 10.7717/peerj.2704  1
2016 O'Grady PM, Pak N. Studies in Hawaiian Diptera III: New Distributional Records for Canacidae and a New Endemic Species of Procanace. Biodiversity Data Journal. e5611. PMID 27226743 DOI: 10.3897/BDJ.4.e5611  1
2014 O'Connor TK, Humphrey PT, Lapoint RT, Whiteman NK, O'Grady PM. Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae. Frontiers in Microbiology. 5: 616. PMID 25566196 DOI: 10.3389/fmicb.2014.00616  1
2014 Lapoint RT, Magnacca KN, O'Grady PM. Phylogenetics of the antopocerus-modified tarsus clade of Hawaiian Drosophila: diversification across the Hawaiian Islands. Plos One. 9: e113227. PMID 25420017 DOI: 10.1371/journal.pone.0113227  1
2014 Goodman KR, Evenhuis NL, Bartošová-Sojková P, O'Grady PM. Diversification in Hawaiian long-legged flies (Diptera: Dolichopodidae: Campsicnemus): biogeographic isolation and ecological adaptation. Molecular Phylogenetics and Evolution. 81: 232-41. PMID 25219449 DOI: 10.1016/j.ympev.2014.07.015  1
2014 O'Grady PM, Arakaki K, Evenhuis NL. Studies in Hawaiian Diptera II: New Distributional Records for Endemic Scatella (Ephydridae). Biodiversity Data Journal. e1110. PMID 25197231 DOI: 10.3897/BDJ.2.e1110  1
2014 O'Grady PM, Magnacca KN. Studies in hawaiian Diptera I: new distributional records for endemic asteia (asteiidae). Biodiversity Data Journal. e1010. PMID 24855434 DOI: 10.3897/BDJ.2.e1010  1
2013 Goodman KR, O'Grady P. Molecular phylogeny and biogeography of the Hawaiian craneflies Dicranomyia (Diptera: Limoniidae). Plos One. 8: e73019. PMID 24058455 DOI: 10.1371/journal.pone.0073019  1
2013 Lapoint RT, O'Grady PM, Whiteman NK. Diversification and dispersal of the Hawaiian Drosophilidae: the evolution of Scaptomyza. Molecular Phylogenetics and Evolution. 69: 95-108. PMID 23669011 DOI: 10.1016/j.ympev.2013.04.032  1
2013 Bennett GM, O'Grady PM. Historical biogeography and ecological opportunity in the adaptive radiation of native Hawaiian leafhoppers (Cicadellidae: Nesophrosyne) Journal of Biogeography. 40: 1512-1523. DOI: 10.1111/jbi.12099  1
2012 Ort BS, Bantay RM, Pantoja NA, O'Grady PM. Fungal diversity associated with Hawaiian Drosophila host plants. Plos One. 7: e40550. PMID 22911703 DOI: 10.1371/journal.pone.0040550  1
2012 Bennett GM, O'Grady PM. Host-plants shape insect diversity: phylogeny, origin, and species diversity of native Hawaiian leafhoppers (Cicadellidae: Nesophrosyne). Molecular Phylogenetics and Evolution. 65: 705-17. PMID 22884527 DOI: 10.1016/j.ympev.2012.07.024  1
2012 Bennett GM, Pantoja NA, O'Grady PM. Diversity and phylogenetic relationships of Wolbachia in Drosophila and other native Hawaiian insects. Fly. 6: 273-83. PMID 22878693 DOI: 10.4161/fly.21161  1
2012 Obbard DJ, Maclennan J, Kim KW, Rambaut A, O'Grady PM, Jiggins FM. Estimating divergence dates and substitution rates in the Drosophila phylogeny. Molecular Biology and Evolution. 29: 3459-73. PMID 22683811 DOI: 10.1093/molbev/mss150  1
2012 Oliveira DC, Almeida FC, O'Grady PM, Armella MA, DeSalle R, Etges WJ. Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group. Molecular Phylogenetics and Evolution. 64: 533-44. PMID 22634936 DOI: 10.1016/j.ympev.2012.05.012  1
2011 Lapoint RT, Gidaya A, O'Grady PM. Phylogenetic relationships in the spoon tarsus subgroup of Hawaiian Drosophila: conflict and concordance between gene trees. Molecular Phylogenetics and Evolution. 58: 492-501. PMID 21195200 DOI: 10.1016/j.ympev.2010.12.015  1
2011 O'Grady PM, Lapoint RT, Bonacum J, Lasola J, Owen E, Wu Y, DeSalle R. Phylogenetic and ecological relationships of the Hawaiian Drosophila inferred by mitochondrial DNA analysis. Molecular Phylogenetics and Evolution. 58: 244-56. PMID 21144904 DOI: 10.1016/j.ympev.2010.11.022  1
2010 Yassin A, Markow TA, Narechania A, O'Grady PM, DeSalle R. The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding. Molecular Phylogenetics and Evolution. 57: 509-17. PMID 20800099 DOI: 10.1016/j.ympev.2010.08.020  0.96
2010 Stark JB, O'Grady PM. Morphological variation in the forelegs of the Hawaiian Drosophilidae. I. The AMC clade. Journal of Morphology. 271: 86-103. PMID 19722270 DOI: 10.1002/jmor.10783  1
2010 Mouser PJ, Rizzo DM, Druschel GK, Morales SE, Hayden N, O'Grady P, Stevens L. Enhanced detection of groundwater contamination from a leaking waste disposal site by microbial community profiles Water Resources Research. 46. DOI: 10.1029/2010WR009459  1
2009 O'Grady PM, Markow TA. Phylogenetic taxonomy in Drosophila. Fly. 3: 10-4. PMID 19556883 DOI: 10.4161/fly.3.1.7748  1
2009 Almeida RP, Bennett GM, Anhalt MD, Tsai CW, O'Grady P. Spread of an introduced vector-borne banana virus in Hawaii. Molecular Ecology. 18: 136-46. PMID 19037897 DOI: 10.1111/j.1365-294X.2008.04009.x  1
2009 O'Grady PM. Drosophila melanogaster Encyclopedia of Insects. 301-303. DOI: 10.1016/B978-0-12-374144-8.00089-8  1
2008 Rosenfeld JA, DeSalle R, Lee EK, O'Grady P. Using whole genome presence/absence data to untangle function in 12 Drosophila genomes. Fly. 2: 291-9. PMID 19139635  1
2008 Schaeffer SW, Bhutkar A, McAllister BF, Matsuda M, Matzkin LM, O'Grady PM, Rohde C, Valente VL, Aguadé M, Anderson WW, Edwards K, Garcia AC, Goodman J, Hartigan J, Kataoka E, et al. Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics. 179: 1601-55. PMID 18622037 DOI: 10.1534/genetics.107.086074  1
2008 O'Grady P, Desalle R. Out of Hawaii: the origin and biogeography of the genus Scaptomyza (Diptera: Drosophilidae). Biology Letters. 4: 195-9. PMID 18296276 DOI: 10.1098/rsbl.2007.0575  1
2008 Magnacca KN, O'Grady PM. Revision of the 'nudidrosophila' and 'ateledrosophila' species groups of Hawaiian Drosophila (Diptera: Drosophilidae), with descriptions of twenty-two new species Systematic Entomology. 33: 395-428. DOI: 10.1111/j.1365-3113.2007.00400.x  1
2008 Markow TA, O'Grady P. Reproductive ecology of Drosophila Functional Ecology. 22: 747-759. DOI: 10.1111/j.1365-2435.2008.01457.x  1
2008 O'Grady PM, Lapoint RT, Bennett GM. The potential and peril of the supertree approach: A response to van der Linde and Houle Insect Systematics and Evolution. 39: 269-280.  1
2008 Magnacca KN, O'Grady PM. New combinations in Hawaiian Drosophila and Scaptomyza (Diptera: Drosophilidae) Zootaxa. 53-60.  1
2008 Magnacca KN, Foote D, O'Grady PM. A review of the endemic Hawaiian Drosophilidae and their host plants Zootaxa. 1-58.  1
2008 Oliveira DCSG, Leonidas M, Etges WJ, O'Grady PM, DeSalle R. Species delimitation in the Drosophila aldrichi subcluster (Diptera: Drosophilidae) using DNA sequences Zootaxa. 37-47.  1
2007 Markow TA, O'Grady PM. Drosophila biology in the genomic age. Genetics. 177: 1269-76. PMID 18039866 DOI: 10.1534/genetics.107.074112  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/nature06341  0.64
2005 Markow TA, O'Grady PM. Evolutionary genetics of reproductive behavior in Drosophila: connecting the dots. Annual Review of Genetics. 39: 263-91. PMID 16285861 DOI: 10.1146/annurev.genet.39.073003.112454  1
2005 Bonacum J, O'Grady PM, Kambysellis M, Desalle R. Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila. Molecular Phylogenetics and Evolution. 37: 73-82. PMID 16182150 DOI: 10.1016/j.ympev.2005.03.008  1
2005 Oliveira DCSG, O'Grady PM, Etges WJ, Heed WB, DeSalle R. Molecular systematics and geographical distribution of the Drosophila longicornis species complex (Diptera: Drosophilidae) Zootaxa. 1-32.  1
2003 Oliveira DC, Wintermute EH, Etges WJ, Heed WB, O'Grady PM, Desalle R. Hierarchical structure in the Drosophila mojavensis cluster (Diptera: Drosophilidae). Hereditas. 139: 223-7. PMID 15061805 DOI: 10.1111/j.1601-5223.2003.01761.x  1
2003 DeSalle R, Branham MA, O'Grady P, Gatesy J. The evolution of HOM-C homeoboxes in the Dipteran family Drosophilidae. Insect Molecular Biology. 12: 345-51. PMID 12864914 DOI: 10.1046/j.1365-2583.2003.00417.x  1
2003 O'Grady PM, Kam MWY, Val FC, Perreira WD. Revision of the Drosophila mimica subgroup, with descriptions of ten new species Annals of the Entomological Society of America. 96: 12-38.  1
2002 O'Grady PM, Durando CM, Heed WB, Wasserman M, Etges W, Desalle R. Genetic divergence within the Drosophila mayaguana subcluster, a closely related triad of Caribbean species in the repleta species group. Hereditas. 136: 240-5. PMID 12471672  1
2002 Remsen J, O'Grady P. Phylogeny of Drosophilinae (Diptera: Drosophilidae), with comments on combined analysis and character support. Molecular Phylogenetics and Evolution. 24: 249-64. PMID 12144760 DOI: 10.1016/S1055-7903(02)00226-9  1
2002 Zilversmit M, O'Grady P, Desalle R. Shallow genomics, phylogenetics, and evolution in the family Drosophilidae. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 512-23. PMID 11928503  1
2002 O'Grady PM. Species to genera: phylogenetic inference in the Hawaiian Drosophilidae. Exs. 17-30. PMID 11924495  1
2002 O'Grady PM, Kidwell MG. Phylogeny of the subgenus sophophora (Diptera: drosophilidae) based on combined analysis of nuclear and mitochondrial sequences. Molecular Phylogenetics and Evolution. 22: 442-53. PMID 11884169 DOI: 10.1006/mpev.2001.1053  1
2002 O'Grady PM, Vela D, Rafael V. Zygothrica desallei: A new species of drosophilidae (Diptera) from Ecuador Annals of the Entomological Society of America. 95: 314-315.  1
2001 O'Grady PM, Baker RH, Durando CM, Etges WJ, DeSalle R. Polytene chromosomes as indicators of phylogeny in several species groups of Drosophila. Bmc Evolutionary Biology. 1: 6. PMID 11696235 DOI: 10.1186/1471-2148-1-6  1
2001 O'Grady PM, Val FC, Hardy DE, Kaneshiro KY. The Rustica species group of Hawaiian Drosophila (Diptera: Drosophilidae) Pan-Pacific Entomologist. 77: 254-260.  1
2001 Etges WJ, Armella MA, O'Grady PM, Heed WB. Two New Species of Drosophila (Diptera: Drosophilidae) in the repleta Group from Mexico Annals of the Entomological Society of America. 94: 16-20.  1
2000 O'Grady PM, DeSalle R. How the fruit fly changed (some of) its spots. Current Biology : Cb. 10: R75-7. PMID 10662660 DOI: 10.1016/S0960-9822(00)00281-5  1
2000 Heed WB, O'Grady PM. Drosophila maya, a new neotropical member of the Drosophila obscura species group (Diptera: Drosophilidae) Journal of the New York Entomological Society. 108: 98-105.  1
1999 O'Grady PM. Reevaluation of phylogeny in the Drosophila obscura species group based on combined analysis of nucleotide sequences. Molecular Phylogenetics and Evolution. 12: 124-39. PMID 10381316 DOI: 10.1006/mpev.1998.0598  1
1999 Gatesy J, O'Grady P, Baker RH. Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level artiodactyl taxa Cladistics. 15: 271-313. DOI: 10.1006/clad.1999.0111  1
1998 O'Grady PM, Clark JB, Kidwell MG. Phylogeny of the Drosophila saltans species group based on combined analysis of nuclear and mitochondrial DNA sequences. Molecular Biology and Evolution. 15: 656-64. PMID 9615447  1
1997 Carareto CM, Kim W, Wojciechowski MF, O'Grady P, Prokchorova AV, Silva JC, Kidwell MG. Testing transposable elements as genetic drive mechanisms using Drosophila P element constructs as a model system. Genetica. 101: 13-33. PMID 9465407  1
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