Joana Silva - Publications

Affiliations: 
University of Maryland, College Park, College Park, MD 
Area:
genome evolution

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Gotia HT, Munro JB, Knowles DP, Daubenberger CA, Bishop RP, Silva JC. Absolute Quantification of the Host-To-Parasite DNA Ratio in Theileria parva-Infected Lymphocyte Cell Lines. Plos One. 11: e0150401. PMID 26930209 DOI: 10.1371/Journal.Pone.0150401  0.4
2016 Tretina K, Pelle R, Silva JC. Cis regulatory motifs and antisense transcriptional control in the apicomplexan Theileria parva. Bmc Genomics. 17: 128. PMID 26896950 DOI: 10.1186/s12864-016-2444-5  0.4
2015 Norling M, Bishop RP, Pelle R, Qi W, Henson S, Drábek EF, Tretina K, Odongo D, Mwaura S, Njoroge T, Bongcam-Rudloff E, Daubenberger CA, Silva JC. The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence. Bmc Genomics. 16: 729. PMID 26403690 DOI: 10.1186/S12864-015-1910-9  0.4
2015 Tretina K, Gotia HT, Mann DJ, Silva JC. Theileria-transformed bovine leukocytes have cancer hallmarks. Trends in Parasitology. 31: 306-14. PMID 25951781 DOI: 10.1016/j.pt.2015.04.001  0.4
2015 Brown TS, Jacob CG, Silva JC, Takala-Harrison S, Djimdé A, Dondorp AM, Fukuda M, Noedl H, Nyunt MM, Kyaw MP, Mayxay M, Hien TT, Plowe CV, Cummings MP. Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 30: 318-22. PMID 25514047 DOI: 10.1016/J.Meegid.2014.12.010  0.4
2015 Takala-Harrison S, Jacob CG, Arze C, Cummings MP, Silva JC, Dondorp AM, Fukuda MM, Hien TT, Mayxay M, Noedl H, Nosten F, Kyaw MP, Nhien NT, Imwong M, Bethell D, et al. Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia. The Journal of Infectious Diseases. 211: 670-9. PMID 25180241 DOI: 10.1093/Infdis/Jiu491  0.4
2015 Silva JC, Egan A, Arze C, Spouge JL, Harris DG. A new method for estimating species age supports the coexistence of malaria parasites and their mammalian hosts Molecular Biology and Evolution. 32: 1354-1364. DOI: 10.1093/molbev/msv005  0.4
2015 Obara I, Ulrike S, Musoke T, Spooner PR, Jabbar A, Odongo D, Kemp S, Silva JC, Bishop RP. Molecular evolution of a central region containing B cell epitopes in the gene encoding the p67 sporozoite antigen within a field population of Theileria parva Parasitology Research. DOI: 10.1007/s00436-015-4358-6  0.4
2014 Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, ... ... Silva JC, et al. Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979. PMID 24936976 DOI: 10.1371/Journal.Pone.0099979  0.4
2013 Munro JB, Jacob CG, Silva JC. A novel clade of unique eukaryotic ribonucleotide reductase R2 subunits is exclusive to apicomplexan parasites. Journal of Molecular Evolution. 77: 92-106. PMID 24046025 DOI: 10.1007/s00239-013-9583-y  0.4
2013 Cornillot E, Dassouli A, Garg A, Pachikara N, Randazzo S, Depoix D, Carcy B, Delbecq S, Frutos R, Silva JC, Sutton R, Krause PJ, Mamoun CB. Whole genome mapping and re-organization of the nuclear and mitochondrial genomes of Babesia microti isolates. Plos One. 8: e72657. PMID 24023759 DOI: 10.1371/Journal.Pone.0072657  0.4
2013 Takala-Harrison S, Clark TG, Jacob CG, Cummings MP, Miotto O, Dondorp AM, Fukuda MM, Nosten F, Noedl H, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, ... ... Silva JC, et al. Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America. 110: 240-5. PMID 23248304 DOI: 10.1073/Pnas.1211205110  0.4
2012 Kappmeyer LS, Thiagarajan M, Herndon DR, Ramsay JD, Caler E, Djikeng A, Gillespie JJ, Lau AO, Roalson EH, Silva JC, Silva MG, Suarez CE, Ueti MW, Nene VM, Mealey RH, et al. Comparative genomic analysis and phylogenetic position of Theileria equi. Bmc Genomics. 13: 603. PMID 23137308 DOI: 10.1186/1471-2164-13-603  0.4
2012 Munro JB, Silva JC. Ribonucleotide reductase as a target to control apicomplexan diseases Current Issues in Molecular Biology. 14: 9-26. PMID 21791713  0.4
2011 Pelle R, Graham SP, Njahira MN, Osaso J, Saya RM, Odongo DO, Toye PG, Spooner PR, Musoke AJ, Mwangi DM, Taracha EL, Morrison WI, Weir W, Silva JC, Bishop RP. Two Theileria parva CD8 T cell antigen genes are more variable in buffalo than cattle parasites, but differ in pattern of sequence diversity. Plos One. 6: e19015. PMID 21559495 DOI: 10.1371/journal.pone.0019015  0.4
2011 Silva JC, Egan A, Friedman R, Munro JB, Carlton JM, Hughes AL. Genome sequences reveal divergence times of malaria parasite lineages. Parasitology. 138: 1737-49. PMID 21118608 DOI: 10.1017/S0031182010001575  0.4
2009 Lopes FR, Silva JC, Benchimol M, Costa GGL, Pereira GAG, Carareto CMA. The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements Bmc Genomics. 10. PMID 19622157 DOI: 10.1186/1471-2164-10-330  0.4
2008 Egan A, Mahurkar A, Crabtree J, Badger JH, Carlton JM, Silva JC. IDEA: Interactive Display for Evolutionary Analyses. Bmc Bioinformatics. 9: 524. PMID 19061522 DOI: 10.1186/1471-2105-9-524  0.4
2008 Guo X, Silva JC. Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva Bmc Genomics. 9. PMID 19055776 DOI: 10.1186/1471-2164-9-582  0.4
2008 Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature. 455: 757-63. PMID 18843361 DOI: 10.1038/Nature07327  0.4
2008 Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, et al. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Plos Genetics. 4: e1000046. PMID 18404212 DOI: 10.1371/Journal.Pgen.1000046  0.4
2008 Lin H, Ouyang S, Egan A, Nobuta K, Haas BJ, Zhu W, Gu X, Silva JC, Meyers BC, Buell CR. Characterization of paralogous protein families in rice. Bmc Plant Biology. 8: 18. PMID 18284697 DOI: 10.1186/1471-2229-8-18  0.4
2007 Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, et al. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (New York, N.Y.). 315: 207-12. PMID 17218520 DOI: 10.1126/Science.1132894  0.4
2006 Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286  0.4
2006 Lin H, Zhu W, Silva JC, Gu X, Buell CR. Intron gain and loss in segmentally duplicated genes in rice. Genome Biology. 7: R41. PMID 16719932 DOI: 10.1186/Gb-2006-7-5-R41  0.4
2005 El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, ... ... Silva JC, et al. Comparative genomics of trypanosomatid parasitic protozoa. Science (New York, N.Y.). 309: 404-9. PMID 16020724 DOI: 10.1126/Science.1112181  0.4
2005 Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, ... ... Silva JC, et al. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science (New York, N.Y.). 309: 134-7. PMID 15994558 DOI: 10.1126/Science.1110439  0.4
2005 Carlton J, Silva J, Hall N. The genome of model malaria parasites, and comparative genomics Current Issues in Molecular Biology. 7: 23-38. PMID 15580778  0.4
2005 Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM. A potentially functional mariner transposable element in the protist Trichomonas vaginalis. Molecular Biology and Evolution. 22: 126-34. PMID 15371525 DOI: 10.1093/molbev/msh260  0.4
2004 Silva JC, Kidwell MG. Evolution of P elements in natural populations of Drosophila willistoni and D. sturtevanti. Genetics. 168: 1323-35. PMID 15579688 DOI: 10.1534/genetics.103.025775  0.4
2004 Oliveira De Carvalho M, Silva JC, Loreto ELS. Analyses of P-like transposable element sequences from the genome of Anopheles gambiae Insect Molecular Biology. 13: 55-63. PMID 14728667 DOI: 10.1111/j.1365-2583.2004.00461.x  0.4
2004 Silva JC, Loreto EL, Clark JB. Factors that affect the horizontal transfer of transposable elements. Current Issues in Molecular Biology. 6: 57-71. PMID 14632259  0.4
2003 Silva JC, Shabalina SA, Harris DG, Spouge JL, Kondrashov AS. Conserved fragments of transposable elements in intergenic regions: Evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes Genetical Research. 82: 1-18. PMID 14621267 DOI: 10.1017/S0016672303006268  0.4
2002 Silva JC, Kondrashov AS. Patterns in spontaneous mutation revealed by human-baboon sequence comparison. Trends in Genetics : Tig. 18: 544-7. PMID 12414177 DOI: 10.1016/S0168-9525(02)02757-9  0.4
2002 Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL, Peterson JD, Pop M, Kosack DS, Shumway MF, Bidwell SL, et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419: 512-9. PMID 12368865 DOI: 10.1038/Nature01099  0.4
2001 Loreto EL, Valente VL, Zaha A, Silva JC, Kidwell MG. Drosophila mediopunctata P elements: a new example of horizontal transfer. The Journal of Heredity. 92: 375-81. PMID 11773243  0.4
2001 Yang HP, Tanikawa AY, Van Voorhies WA, Silva JC, Kondrashov AS. Whole-genome effects of ethyl methanesulfonate-induced mutation on nine quantitative traits in outbred Drosophila melanogaster Genetics. 157: 1257-1265. PMID 11238409  0.4
2000 Silva JC, Kidwell MG. Horizontal transfer and selection in the evolution of P elements. Molecular Biology and Evolution. 17: 1542-57. PMID 11018160  0.4
1997 Carareto CM, Kim W, Wojciechowski MF, O'Grady P, Prokchorova AV, Silva JC, Kidwell MG. Testing transposable elements as genetic drive mechanisms using Drosophila P element constructs as a model system. Genetica. 101: 13-33. PMID 9465407 DOI: 10.1023/A:1018339603370  0.4
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