Jeffrey A. Rosenfeld, Ph.D. - Publications

Affiliations: 
2009 Biology New York University, New York, NY, United States 
Area:
evolutionary biology

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Oppenheim SJ, Rosenfeld JA, DeSalle R. Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors. Bmc Genomics. 18: 205. PMID 28241792 DOI: 10.1186/s12864-017-3590-0  1
2016 Rosenfeld JA, Oppenheim S, DeSalle R. A whole genome gene content phylogenetic analysis of anopheline mosquitoes. Molecular Phylogenetics and Evolution. PMID 27866013 DOI: 10.1016/j.ympev.2016.11.006  1
2016 Kolokotronis SO, Foox J, Rosenfeld JA, Brugler MR, Reeves D, Benoit JB, Booth W, Robison G, Steffen M, Sakas Z, Palli SR, Schal C, Richards S, Narechania A, Baker RH, et al. The mitogenome of the bed bug Cimex lectularius (Hemiptera: Cimicidae). Mitochondrial Dna. Part B, Resources. 1: 425-427. PMID 27617305 DOI: 10.1080/23802359.2016.1180268  1
2016 Rosenfeld J, Foox J, DeSalle R. Data for constructing insect genome content matrices for phylogenetic analysis and functional annotation. Data in Brief. 6: 279-81. PMID 26862572 DOI: 10.1016/j.dib.2015.12.015  1
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/ncomms10164  1
2015 Rosenfeld J, Foox J, DeSalle R. Insect genome content phylogeny and functional annotation of core insect genomes. Molecular Phylogenetics and Evolution. PMID 26549428 DOI: 10.1016/j.ympev.2015.10.014  1
2015 Chhangawala S, Rudy G, Mason CE, Rosenfeld JA. The impact of read length on quantification of differentially expressed genes and splice junction detection. Genome Biology. 16: 131. PMID 26100517 DOI: 10.1186/s13059-015-0697-y  1
2015 Das A, Bellofatto V, Rosenfeld J, Carrington M, Romero-Zaliz R, del Val C, Estévez AM. High throughput sequencing analysis of Trypanosoma brucei DRBD3/PTB1-bound mRNAs. Molecular and Biochemical Parasitology. 199: 1-4. PMID 25725478 DOI: 10.1016/j.molbiopara.2015.02.003  1
2014 Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, ... ... Rosenfeld J, ... ... Rosenfeld J, et al. Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. Nature Biotechnology. 32: 915-25. PMID 25150835 DOI: 10.1038/nbt.2972  1
2014 Rosenfeld J, Mason C. Response to 'pervasive sequence patents cover the entire human genome' - authors' reply. Genome Medicine. 6: 15. PMID 24764495 DOI: 10.1186/gm532  1
2013 Lencz T, Guha S, Liu C, Rosenfeld J, Mukherjee S, DeRosse P, John M, Cheng L, Zhang C, Badner JA, Ikeda M, Iwata N, Cichon S, Rietschel M, Nöthen MM, et al. Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder. Nature Communications. 4: 2739. PMID 24253340 DOI: 10.1038/ncomms3739  1
2013 Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, ... ... Rosenfeld JA, et al. Integrative annotation of variants from 1092 humans: application to cancer genomics. Science (New York, N.Y.). 342: 1235587. PMID 24092746 DOI: 10.1126/science.1235587  1
2013 Cameron P, Corne DW, Mason CE, Rosenfeld J. Crowdfunding genomics and bioinformatics. Genome Biology. 14: 134. PMID 24079746 DOI: 10.1186/gb-2013-14-9-134  1
2013 Rosenfeld JA, Mason CE. Pervasive sequence patents cover the entire human genome. Genome Medicine. 5: 27. PMID 23522065 DOI: 10.1186/gm431  1
2013 Guha S, Rees E, Darvasi A, Ivanov D, Ikeda M, Bergen SE, Magnusson PK, Cormican P, Morris D, Gill M, Cichon S, Rosenfeld JA, Lee A, Gregersen PK, Kane JM, et al. Implication of a rare deletion at distal 16p11.2 in schizophrenia. Jama Psychiatry. 70: 253-60. PMID 23325106 DOI: 10.1001/2013.jamapsychiatry.71  1
2012 Rosenfeld JA, Mason CE, Smith TM. Limitations of the human reference genome for personalized genomics. Plos One. 7: e40294. PMID 22811759 DOI: 10.1371/journal.pone.0040294  1
2012 Rosenfeld JA, Payne A, DeSalle R. Random roots and lineage sorting. Molecular Phylogenetics and Evolution. 64: 12-20. PMID 22445448 DOI: 10.1016/j.ympev.2012.02.029  1
2012 MacArthur DG, Balasubramanian S, Frankish A, Huang N, Morris J, Walter K, Jostins L, Habegger L, Pickrell JK, Montgomery SB, Albers CA, Zhang ZD, Conrad DF, Lunter G, Zheng H, ... ... Rosenfeld JA, et al. A systematic survey of loss-of-function variants in human protein-coding genes. Science (New York, N.Y.). 335: 823-8. PMID 22344438 DOI: 10.1126/science.1215040  1
2012 Rosenfeld JA, DeSalle R. E value cutoff and eukaryotic genome content phylogenetics. Molecular Phylogenetics and Evolution. 63: 342-50. PMID 22306824 DOI: 10.1016/j.ympev.2012.01.003  1
2012 Guha S, Rosenfeld JA, Malhotra AK, Lee AT, Gregersen PK, Kane JM, Pe'er I, Darvasi A, Lencz T. Implications for health and disease in the genetic signature of the Ashkenazi Jewish population. Genome Biology. 13: R2. PMID 22277159 DOI: 10.1186/gb-2012-13-1-r2  1
2012 Samoshkin A, Dulev S, Loukinov D, Rosenfeld JA, Strunnikov AV. Condensin dysfunction in human cells induces nonrandom chromosomal breaks in anaphase, with distinct patterns for both unique and repeated genomic regions. Chromosoma. 121: 191-9. PMID 22179743 DOI: 10.1007/s00412-011-0353-6  1
2012 Lazzarini LC, Rosenfeld J, Huard RC, Hill V, Lapa e Silva JR, DeSalle R, Rastogi N, Ho JL. Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 798-806. PMID 21920466 DOI: 10.1016/j.meegid.2011.08.028  1
2011 Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427. DOI: 10.1111/j.1096-0031.2010.00337.x  1
2010 Rosenfeld JA, Malhotra AK, Lencz T. Novel multi-nucleotide polymorphisms in the human genome characterized by whole genome and exome sequencing. Nucleic Acids Research. 38: 6102-11. PMID 20488869 DOI: 10.1093/nar/gkq408  1
2009 Rosenfeld JA, Xuan Z, DeSalle R. Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3. Epigenetics : Official Journal of the Dna Methylation Society. 4: 476-86. PMID 19786836 DOI: 10.4161/epi.4.7.9809  1
2009 Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ. Determination of enriched histone modifications in non-genic portions of the human genome. Bmc Genomics. 10: 143. PMID 19335899 DOI: 10.1186/1471-2164-10-143  1
2009 Lemke MJ, Lienau EK, Rothe J, Pagioro TA, Rosenfeld J, Desalle R. Description of freshwater bacterial assemblages from the upper paraná river floodpulse system, Brazil. Microbial Ecology. 57: 94-103. PMID 18587611 DOI: 10.1007/s00248-008-9398-3  1
2008 Rosenfeld JA, DeSalle R, Lee EK, O'Grady P. Using whole genome presence/absence data to untangle function in 12 Drosophila genomes. Fly. 2: 291-9. PMID 19139635  1
2008 Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genetics. 40: 897-903. PMID 18552846 DOI: 10.1038/ng.154  1
2006 Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Systematic Biology. 55: 441-53. PMID 16861208 DOI: 10.1080/10635150600697416  1
2004 Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics (Oxford, England). 20: 3462-5. PMID 15271781 DOI: 10.1093/bioinformatics/bth427  1
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