Ed J. Ryder - Publications

Affiliations: 
University of Cambridge, Cambridge, England, United Kingdom 
Area:
Genetics, Bioinformatics

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Reissig LF, Herdina AN, Rose J, Maurer-Gesek B, Lane JL, Prin F, Wilson R, Hardman E, Galli A, Tudor C, Tuck E, Icoresi-Mazzeo C, White JK, Ryder E, Gleeson D, et al. The mouse line - lessons from the deciphering the mechanisms of developmental disorders (DMDD) program. Biology Open. PMID 31331924 DOI: 10.1242/Bio.042895  0.332
2019 Collins JE, White RJ, Staudt N, Sealy IM, Packham I, Wali N, Tudor C, Mazzeo C, Green A, Siragher E, Ryder E, White JK, Papatheodoru I, Tang A, Füllgrabe A, et al. Common and distinct transcriptional signatures of mammalian embryonic lethality. Nature Communications. 10: 2792. PMID 31243271 DOI: 10.1038/S41467-019-10642-X  0.388
2019 Ballesteros Reviriego C, Clare S, Arends MJ, Cambridge EL, Swiatkowska A, Caetano S, Abu-Helil B, Kane L, Harcourt K, Goulding DA, Gleeson D, Ryder E, Doe B, White JK, van der Weyden L, et al. FBXO7 sensitivity of phenotypic traits elucidated by a hypomorphic allele. Plos One. 14: e0212481. PMID 30840666 DOI: 10.1371/Journal.Pone.0212481  0.386
2019 O'Connell AE, Gerashchenko MV, O'Donohue MF, Rosen SM, Huntzinger E, Gleeson D, Galli A, Ryder E, Cao S, Murphy Q, Kazerounian S, Morton SU, Schmitz-Abe K, Gladyshev VN, Gleizes PE, et al. Mammalian Hbs1L deficiency causes congenital anomalies and developmental delay associated with Pelota depletion and 80S monosome accumulation. Plos Genetics. 15: e1007917. PMID 30707697 DOI: 10.1371/Journal.Pgen.1007917  0.334
2018 Iyer V, Boroviak K, Thomas M, Doe B, Riva L, Ryder E, Adams DJ. No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice. Plos Genetics. 14: e1007503. PMID 29985941 DOI: 10.1371/Journal.Pgen.1007503  0.379
2018 Perez-Garcia V, Fineberg E, Wilson R, Murray A, Mazzeo CI, Tudor C, Sienerth A, White JK, Tuck E, Ryder EJ, Gleeson D, Siragher E, Wardle-Jones H, Staudt N, Wali N, et al. Placentation defects are highly prevalent in embryonic lethal mouse mutants. Nature. PMID 29539633 DOI: 10.1038/Nature26002  0.359
2017 Weyden LV, Arends MJ, Campbell AD, Bald T, Wardle-Jones H, Griggs N, Velasco-Herrera MD, Tüting T, Sansom OJ, Karp NA, Clare S, Gleeson D, Ryder E, Galli A, Tuck E, et al. Genome-wide in vivo screen identifies novel host regulators of metastatic colonization. Nature. PMID 28052056 DOI: 10.1038/Nature20792  0.308
2016 Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, ... ... Ryder E, et al. High-throughput discovery of novel developmental phenotypes. Nature. PMID 27626380 DOI: 10.1038/Nature19356  0.406
2016 Kaloff C, Anastassiadis K, Ayadi A, Baldock R, Beig J, Birling M, Bradley A, Brown S, Bürger A, Bushell W, Chiani F, Collins F, Doe B, Eppig J, Finnell R, ... ... Ryder E, et al. Genome wide conditional mouse knockout resources Drug Discovery Today: Disease Models. 20: 3-12. DOI: 10.1016/J.Ddmod.2017.08.002  0.417
2015 de Angelis MH, Nicholson G, Selloum M, White JK, Morgan H, Ramirez-Solis R, Sorg T, Wells S, Fuchs H, Fray M, Adams DJ, Adams NC, Adler T, Aguilar-Pimentel A, Ali-Hadji D, ... ... Ryder E, et al. Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics. Nature Genetics. PMID 26214591 DOI: 10.1038/Ng.3360  0.432
2015 Scavizzi F, Ryder E, Newman S, Raspa M, Gleeson D, Wardle-Jones H, Montoliu L, Fernandez A, Dessain ML, Larrigaldie V, Khorshidi Z, Vuolteenaho R, Soininen R, André P, Jacquot S, et al. Blastocyst genotyping for quality control of mouse mutant archives: an ethical and economical approach. Transgenic Research. 24: 921-7. PMID 26178246 DOI: 10.1007/s11248-015-9897-1  0.365
2014 Lowe N, Rees JS, Roote J, Ryder E, Armean IM, Johnson G, Drummond E, Spriggs H, Drummond J, Magbanua JP, Naylor H, Sanson B, Bastock R, Huelsmann S, Trovisco V, et al. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Development (Cambridge, England). 141: 3994-4005. PMID 25294943 DOI: 10.1242/Dev.111054  0.534
2014 Maguire S, Estabel J, Ingham N, Pearson S, Ryder E, Carragher DM, Walker N, Bussell J, Chan WI, Keane TM, Adams DJ, Scudamore CL, Lelliott CJ, Ramírez-Solis R, et al. Targeting of Slc25a21 is associated with orofacial defects and otitis media due to disrupted expression of a neighbouring gene. Plos One. 9: e91807. PMID 24642684 DOI: 10.1371/Journal.Pone.0091807  0.37
2014 Ryder E, Doe B, Gleeson D, Houghton R, Dalvi P, Grau E, Habib B, Miklejewska E, Newman S, Sethi D, Sinclair C, Vyas S, Wardle-Jones H, Bottomley J, et al. Rapid conversion of EUCOMM/KOMP-CSD alleles in mouse embryos using a cell-permeable Cre recombinase. Transgenic Research. 23: 177-85. PMID 24197666 DOI: 10.1007/s11248-013-9764-x  0.318
2013 Ryder E, Gleeson D, Sethi D, Vyas S, Miklejewska E, Dalvi P, Habib B, Cook R, Hardy M, Jhaveri K, Bottomley J, Wardle-Jones H, Bussell JN, Houghton R, Salisbury J, et al. Molecular characterization of mutant mouse strains generated from the EUCOMM/KOMP-CSD ES cell resource. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 286-94. PMID 23912999 DOI: 10.1007/S00335-013-9467-X  0.332
2013 White JK, Gerdin AK, Karp NA, Ryder E, Buljan M, Bussell JN, Salisbury J, Clare S, Ingham NJ, Podrini C, Houghton R, Estabel J, Bottomley JR, Melvin DG, Sunter D, et al. Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes. Cell. 154: 452-64. PMID 23870131 DOI: 10.1016/J.Cell.2013.06.022  0.419
2013 Ryder E, Wong K, Gleeson D, Keane TM, Sethi D, Vyas S, Wardle-Jones H, Bussell JN, Houghton R, Salisbury J, Harvey N, Adams DJ, Ramirez-Solis R. Genomic analysis of a novel spontaneous albino C57BL/6N mouse strain. Genesis (New York, N.Y. : 2000). 51: 523-8. PMID 23620107 DOI: 10.1002/Dvg.22398  0.312
2012 Basel-Vanagaite L, Dallapiccola B, Ramirez-Solis R, Segref A, Thiele H, Edwards A, Arends MJ, Miró X, White JK, Désir J, Abramowicz M, Dentici ML, Lepri F, Hofmann K, Har-Zahav A, ... Ryder E, et al. Deficiency for the ubiquitin ligase UBE3B in a blepharophimosis-ptosis-intellectual-disability syndrome. American Journal of Human Genetics. 91: 998-1010. PMID 23200864 DOI: 10.1016/J.Ajhg.2012.10.011  0.326
2012 Bradley A, Anastassiadis K, Ayadi A, Battey JF, Bell C, Birling MC, Bottomley J, Brown SD, Bürger A, Bult CJ, Bushell W, Collins FS, Desaintes C, Doe B, Economides A, ... ... Ryder E, et al. The mammalian gene function resource: the International Knockout Mouse Consortium. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 580-6. PMID 22968824 DOI: 10.1007/S00335-012-9422-2  0.426
2012 Ayadi A, Birling MC, Bottomley J, Bussell J, Fuchs H, Fray M, Gailus-Durner V, Greenaway S, Houghton R, Karp N, Leblanc S, Lengger C, Maier H, Mallon AM, Marschall S, ... ... Ryder E, et al. Mouse large-scale phenotyping initiatives: overview of the European Mouse Disease Clinic (EUMODIC) and of the Wellcome Trust Sanger Institute Mouse Genetics Project. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 600-10. PMID 22961258 DOI: 10.1007/S00335-012-9418-Y  0.387
2012 Ramírez‐Solis R, Ryder E, Houghton R, White JK, Bottomley J. Large-scale mouse knockouts and phenotypes. Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 4: 547-563. PMID 22899600 DOI: 10.1002/Wsbm.1183  0.421
2012 Bassett JH, Gogakos A, White JK, Evans H, Jacques RM, van der Spek AH, Ramirez-Solis R, Ryder E, Sunter D, Boyde A, Campbell MJ, Croucher PI, Williams GR. Rapid-throughput skeletal phenotyping of 100 knockout mice identifies 9 new genes that determine bone strength. Plos Genetics. 8: e1002858. PMID 22876197 DOI: 10.1371/Journal.Pgen.1002858  0.372
2011 Rees JS, Lowe N, Armean IM, Roote J, Johnson G, Drummond E, Spriggs H, Ryder E, Russell S, St Johnston D, Lilley KS. In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Molecular & Cellular Proteomics : McP. 10: M110.002386. PMID 21447707 DOI: 10.1074/mcp.M110.002386  0.496
2009 Ryder E, Spriggs H, Drummond E, St Johnston D, Russell S. The Flannotator--a gene and protein expression annotation tool for Drosophila melanogaster. Bioinformatics (Oxford, England). 25: 548-9. PMID 19126575 DOI: 10.1093/bioinformatics/btp012  0.54
2008 Edwards CA, Mungall AJ, Matthews L, Ryder E, Gray DJ, Pask AJ, Shaw G, Graves JA, Rogers J, Dunham I, Renfree MB, Ferguson-Smith AC. The evolution of the DLK1-DIO3 imprinted domain in mammals. Plos Biology. 6: e135. PMID 18532878 DOI: 10.1371/Journal.Pbio.0060135  0.336
2007 Ryder E, Ashburner M, Bautista-Llacer R, Drummond J, Webster J, Johnson G, Morley T, Chan YS, Blows F, Coulson D, Reuter G, Baisch H, Apelt C, Kauk A, Rudolph T, et al. The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. Genetics. 177: 615-29. PMID 17720900 DOI: 10.1534/Genetics.107.076216  0.639
2006 Mellersh CS, Boursnell ME, Pettitt L, Ryder EJ, Holmes NG, Grafham D, Forman OP, Sampson J, Barnett KC, Blanton S, Binns MM, Vaudin M. Canine RPGRIP1 mutation establishes cone-rod dystrophy in miniature longhaired dachshunds as a homologue of human Leber congenital amaurosis. Genomics. 88: 293-301. PMID 16806805 DOI: 10.1016/j.ygeno.2006.05.004  0.354
2006 Ryder E, Jackson R, Ferguson-Smith A, Russell S. MAMMOT--a set of tools for the design, management and visualization of genomic tiling arrays. Bioinformatics (Oxford, England). 22: 883-4. PMID 16452111 DOI: 10.1093/bioinformatics/btl031  0.507
2004 Ryder E, Blows F, Ashburner M, Bautista-Llacer R, Coulson D, Drummond J, Webster J, Gubb D, Gunton N, Johnson G, O'Kane CJ, Huen D, Sharma P, Asztalos Z, Baisch H, et al. The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. Genetics. 167: 797-813. PMID 15238529 DOI: 10.1534/Genetics.104.026658  0.646
2003 Ryder E, Russell S. Transposable elements as tools for genomics and genetics in Drosophila Briefings in Functional Genomics and Proteomics. 2: 57-71. PMID 15239944 DOI: 10.1093/bfgp/2.1.57  0.585
2001 Breen M, Jouquand S, Renier C, Mellersh CS, Hitte C, Holmes NG, Chéron A, Suter N, Vignaux F, Bristow AE, Priat C, McCann E, André C, Boundy S, Gitsham P, ... ... Ryder EJ, et al. Chromosome-specific single-locus FISH probes allow anchorage of an 1800-marker integrated radiation-hybrid/linkage map of the domestic dog genome to all chromosomes. Genome Research. 11: 1784-95. PMID 11591656 DOI: 10.1101/Gr.189401  0.38
2001 Lingaas F, Aarskaug T, Gerlach JA, Juneja RK, Fredholm M, Sampson J, Suter N, Holmes NG, Binns MM, Ryder EJ, Van Haeringen WA, Venta PJ, Brouillette JA, Yuzbasiyan-Gurkan V, Wilton AN, et al. A canine linkage map: 39 linkage groups Journal of Animal Breeding and Genetics. 118: 3-19. DOI: 10.1046/j.1439-0388.2001.00270.x  0.344
1999 Dickens HF, Holmes NG, Ryder E, Breen M, Thomas R, Suter N, Sampson J, Langford CF, Ross M, Carter NP, Binns MM. Use of cosmid-derived and chromosome-specific canine microsatellites. The Journal of Heredity. 90: 52-4. PMID 9987903 DOI: 10.1093/Jhered/90.1.52  0.366
1999 Breen M, Langford CF, Carter NP, Holmes NG, Dickens HF, Thomas R, Suter N, Ryder EJ, Pope M, Binns MM. FISH mapping and identification of canine chromosomes. The Journal of Heredity. 90: 27-30. PMID 9987898 DOI: 10.1093/Jhered/90.1.27  0.328
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