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Ken Sugino, Ph.D. - Publications

Affiliations: 
2004 Brandeis University, Waltham, MA, United States 
Area:
Visual cortex
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lee YJ, Yang CP, Miyares RL, Huang YF, He Y, Ren Q, Chen HM, Kawase T, Ito M, Otsuna H, Sugino K, Aso Y, Ito K, Lee T. Conservation and divergence of related neuronal lineages in the central brain. Elife. 9. PMID 32255422 DOI: 10.7554/Elife.53518  0.477
2020 Li C, Li X, Bi Z, Sugino K, Wang G, Zhu T, Liu Z. Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages. Elife. 9. PMID 31913118 DOI: 10.7554/Elife.50491  0.459
2020 Lee Y, Yang C, Miyares RL, Huang Y, He Y, Ren Q, Chen H, Kawase T, Ito M, Otsuna H, Sugino K, Aso Y, Ito K, Lee T. Author response: Conservation and divergence of related neuronal lineages in the Drosophila central brain Elife. DOI: 10.7554/Elife.53518.Sa2  0.41
2019 Liu LY, Long X, Yang CP, Miyares RL, Sugino K, Singer RH, Lee T. Mamo decodes hierarchical temporal gradients into terminal neuronal fate. Elife. 8. PMID 31545163 DOI: 10.7554/Elife.48056  0.469
2019 Sugino K, Clark E, Schulmann A, Shima Y, Wang L, Hunt DL, Hooks BM, Traenkner D, Chandrashekar J, Picard S, Lemire AL, Spruston N, Hantman AW, Nelson SB. Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain. Elife. 8. PMID 30977723 DOI: 10.7554/Elife.38619  0.685
2019 Li C, Li X, Bi Z, Sugino K, Wang G, Zhu T, Liu Z. Author response: Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages Elife. DOI: 10.7554/Elife.50491.Sa2  0.384
2019 Liu L, Long X, Yang C, Miyares RL, Sugino K, Singer RH, Lee T. Author response: Mamo decodes hierarchical temporal gradients into terminal neuronal fate Elife. DOI: 10.7554/Elife.48056.034  0.397
2019 Sugino K, Clark E, Schulmann A, Shima Y, Wang L, Hunt DL, Hooks BM, Tränkner D, Chandrashekar J, Picard S, Lemire AL, Spruston N, Hantman AW, Nelson SB. Author response: Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain Elife. DOI: 10.7554/Elife.38619.048  0.573
2018 Yamashita T, Zheng F, Finkelstein D, Kellard Z, Robert C, Rosencrance CD, Sugino K, Easton J, Gawad C, Zuo J. High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a co-reprogramming factor. Plos Genetics. 14: e1007552. PMID 30063705 DOI: 10.1371/Journal.Pgen.1007552  0.387
2017 Ren Q, Yang CP, Liu Z, Sugino K, Mok K, He Y, Ito M, Nern A, Otsuna H, Lee T. Stem Cell-Intrinsic, Seven-up-Triggered Temporal Factor Gradients Diversify Intermediate Neural Progenitors. Current Biology : Cb. PMID 28434858 DOI: 10.1016/J.Cub.2017.03.047  0.403
2016 Steinmetz CC, Tatavarty V, Sugino K, Shima Y, Joseph A, Lin H, Rutlin M, Lambo M, Hempel CM, Okaty BW, Paradis S, Nelson SB, Turrigiano GG. Upregulation of μ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway. Cell Reports. PMID 27568566 DOI: 10.1016/J.Celrep.2016.08.009  0.751
2016 Branco T, Tozer A, Magnus CJ, Sugino K, Tanaka S, Lee AK, Wood JN, Sternson SM. Near-Perfect Synaptic Integration by Nav1.7 in Hypothalamic Neurons Regulates Body Weight. Cell. 165: 1749-1761. PMID 27315482 DOI: 10.1016/J.Cell.2016.05.019  0.406
2016 Cembrowski MS, Wang L, Sugino K, Shields BC, Spruston N. Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons. Elife. 5. PMID 27113915 DOI: 10.7554/Elife.14997  0.458
2016 Shima Y, Sugino K, Hempel C, Shima M, Taneja P, Bullis JB, Mehta S, Lois C, Nelson SB. A mammalian enhancer trap resource for discovering and manipulating neuronal cell types. Elife. 5. PMID 26999799 DOI: 10.7554/Elife.13503  0.771
2016 Cembrowski MS, Bachman JL, Wang L, Sugino K, Shields BC, Spruston N. Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons. Neuron. PMID 26777276 DOI: 10.1016/J.Neuron.2015.12.013  0.426
2016 Cembrowski MS, Wang L, Sugino K, Shields BC, Spruston N. Author response: Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons Elife. DOI: 10.7554/Elife.14997.028  0.426
2016 Shima Y, Sugino K, Hempel CM, Shima M, Taneja P, Bullis JB, Mehta S, Lois C, Nelson SB. Author response: A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types Elife. DOI: 10.7554/Elife.13503.041  0.764
2015 Yang CP, Fu CC, Sugino K, Liu Z, Ren Q, Liu LY, Yao X, Lee LP, Lee T. Transcriptomes of lineage-specific Drosophila neuroblasts profiled via genetic targeting and robotic sorting. Development (Cambridge, England). PMID 26700685 DOI: 10.1242/Dev.129163  0.431
2015 Liu Z, Yang CP, Sugino K, Fu CC, Liu LY, Yao X, Lee LP, Lee T. Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates. Science (New York, N.Y.). 350: 317-20. PMID 26472907 DOI: 10.1126/Science.Aad1886  0.417
2015 Henry FE, Sugino K, Tozer A, Branco T, Sternson SM. Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss. Elife. 4. PMID 26329458 DOI: 10.7554/Elife.09800  0.437
2015 Henry FE, Sugino K, Tozer A, Branco T, Sternson SM. Author response: Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss Elife. DOI: 10.7554/Elife.09800.019  0.39
2014 Sugino K, Hempel CM, Okaty BW, Arnson HA, Kato S, Dani VS, Nelson SB. Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 12877-83. PMID 25232122 DOI: 10.1523/Jneurosci.2674-14.2014  0.745
2014 Tränkner D, Hahne N, Sugino K, Hoon MA, Zuker C. Population of sensory neurons essential for asthmatic hyperreactivity of inflamed airways. Proceedings of the National Academy of Sciences of the United States of America. 111: 11515-20. PMID 25049382 DOI: 10.1073/Pnas.1411032111  0.363
2014 Grange P, Bohland JW, Okaty BW, Sugino K, Bokil H, Nelson SB, Ng L, Hawrylycz M, Mitra PP. Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America. 111: 5397-402. PMID 24706869 DOI: 10.1073/Pnas.1312098111  0.788
2013 Huang CC, Sugino K, Shima Y, Guo C, Bai S, Mensh BD, Nelson SB, Hantman AW. Convergence of pontine and proprioceptive streams onto multimodal cerebellar granule cells. Elife. 2: e00400. PMID 23467508 DOI: 10.7554/Elife.00400  0.605
2013 Huang C, Sugino K, Shima Y, Guo C, Bai S, Mensh BD, Nelson SB, Hantman AW. Author response: Convergence of pontine and proprioceptive streams onto multimodal cerebellar granule cells Elife. DOI: 10.7554/Elife.00400.011  0.571
2011 Boggio KJ, Obasuyi E, Sugino K, Nelson SB, Agar NY, Agar JN. Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact. Expert Review of Proteomics. 8: 591-604. PMID 21999830 DOI: 10.1586/Epr.11.53  0.539
2011 Taniguchi H, He M, Wu P, Kim S, Paik R, Sugino K, Kvitsiani D, Kvitsani D, Fu Y, Lu J, Lin Y, Miyoshi G, Shima Y, Fishell G, Nelson SB, et al. A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex. Neuron. 71: 995-1013. PMID 21943598 DOI: 10.1016/J.Neuron.2011.07.026  0.631
2011 Okaty BW, Sugino K, Nelson SB. Cell type-specific transcriptomics in the brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 6939-43. PMID 21562254 DOI: 10.1523/Jneurosci.0626-11.2011  0.782
2011 Okaty BW, Sugino K, Nelson SB. A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain. Plos One. 6: e16493. PMID 21304595 DOI: 10.1371/Journal.Pone.0016493  0.803
2011 Taniguchi H, He M, Wu P, Kim S, Paik R, Sugino K, Kvitsiani D, Fu Y, Lu J, Lin Y, Miyoshi G, Shima Y, Fishell G, Nelson SB, Huang ZJ. A resource of cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex Neuron. 72: 1091. DOI: 10.1016/j.neuron.2011.12.010  0.569
2010 Nagoshi E, Sugino K, Kula E, Okazaki E, Tachibana T, Nelson S, Rosbash M. Dissecting differential gene expression within the circadian neuronal circuit of Drosophila. Nature Neuroscience. 13: 60-8. PMID 19966839 DOI: 10.1038/Nn.2451  0.679
2009 Kadener S, Menet JS, Sugino K, Horwich MD, Weissbein U, Nawathean P, Vagin VV, Zamore PD, Nelson SB, Rosbash M. A role for microRNAs in the Drosophila circadian clock. Genes & Development. 23: 2179-91. PMID 19696147 DOI: 10.1101/Gad.1819509  0.527
2009 Okaty BW, Miller MN, Sugino K, Hempel CM, Nelson SB. Transcriptional and electrophysiological maturation of neocortical fast-spiking GABAergic interneurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 7040-52. PMID 19474331 DOI: 10.1523/Jneurosci.0105-09.2009  0.775
2009 Kadener S, Rodriguez J, Abruzzi KC, Khodor YL, Sugino K, Marr MT, Nelson S, Rosbash M. Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. Rna (New York, N.Y.). 15: 537-45. PMID 19223442 DOI: 10.1261/Rna.1319309  0.517
2007 Hempel CM, Sugino K, Nelson SB. A manual method for the purification of fluorescently labeled neurons from the mammalian brain. Nature Protocols. 2: 2924-9. PMID 18007629 DOI: 10.1038/Nprot.2007.416  0.789
2006 Nelson SB, Hempel C, Sugino K. Probing the transcriptome of neuronal cell types. Current Opinion in Neurobiology. 16: 571-6. PMID 16962313 DOI: 10.1016/J.Conb.2006.08.006  0.827
2006 Nelson SB, Sugino K, Hempel CM. The problem of neuronal cell types: a physiological genomics approach. Trends in Neurosciences. 29: 339-45. PMID 16714064 DOI: 10.1016/J.Tins.2006.05.004  0.82
2006 Sugino K, Hempel CM, Miller MN, Hattox AM, Shapiro P, Wu C, Huang ZJ, Nelson SB. Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nature Neuroscience. 9: 99-107. PMID 16369481 DOI: 10.1038/Nn1618  0.812
2006 Sugino K, Hempel CM, Miller MN, Hattox AM, Shapiro P, Wu C, Huang ZJ, Nelson SB. Erratum: Molecular taxonomy of major neuronal classes in the adult mouse forebrain Nature Neuroscience. 9: 292-292. DOI: 10.1038/nn0206-292b  0.778
2003 Myme CI, Sugino K, Turrigiano GG, Nelson SB. The NMDA-to-AMPA ratio at synapses onto layer 2/3 pyramidal neurons is conserved across prefrontal and visual cortices. Journal of Neurophysiology. 90: 771-9. PMID 12672778 DOI: 10.1152/Jn.00070.2003  0.689
2002 Hempel CM, Sugino K, Nelson SB. Multi-unit spike-triggered averaging: a method for probing the physiology of central synapses. Journal of Neuroscience Methods. 120: 121-9. PMID 12385762 DOI: 10.1016/S0165-0270(02)00190-5  0.767
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