Johannes Jaeger - Publications

Affiliations: 
University of Cambridge, Cambridge, England, United Kingdom 
Area:
segment determination, gap gene system, evodevo

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 DiFrisco J, Jaeger J. Homology of process: developmental dynamics in comparative biology. Interface Focus. 11: 20210007. PMID 34055306 DOI: 10.1098/rsfs.2021.0007  0.334
2020 DiFrisco J, Jaeger J. Genetic Causation in Complex Regulatory Systems: An Integrative Dynamic Perspective. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 42: e1900226. PMID 32449193 DOI: 10.1002/bies.201900226  0.315
2019 Verd B, Monk NA, Jaeger J. Modularity, criticality, and evolvability of a developmental gene regulatory network. Elife. 8. PMID 31169494 DOI: 10.7554/eLife.42832  0.409
2019 Verd B, Monk NA, Jaeger J. Author response: Modularity, criticality, and evolvability of a developmental gene regulatory network Elife. DOI: 10.7554/Elife.42832.023  0.449
2019 DiFrisco J, Jaeger J. Beyond networks: mechanism and process in evo-devo Biology and Philosophy. 34: 54. DOI: 10.1007/S10539-019-9716-9  0.393
2018 Jiménez-Guri E, Wotton KR, Jaeger J. is expressed as a gap gene but has no gap gene phenotype in the moth midge . Royal Society Open Science. 5: 180458. PMID 30225035 DOI: 10.1098/rsos.180458  0.537
2018 Fraire-Zamora JJ, Jaeger J, Solon J. Two consecutive microtubule-based epithelial seaming events mediate dorsal closure in the scuttle fly. Elife. 7. PMID 29537962 DOI: 10.7554/eLife.33807  0.304
2018 Verd B, Clark E, Wotton KR, Janssens H, Jiménez-Guri E, Crombach A, Jaeger J. A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila. Plos Biology. 16: e2003174. PMID 29451884 DOI: 10.1371/journal.pbio.2003174  0.756
2018 Jaeger J. Shift happens: The developmental and evolutionary dynamics of the gap gene system Current Opinion in Systems Biology. 11: 65-73. DOI: 10.1016/J.COISB.2018.08.004  0.558
2017 Wotton KR, Alcaine-Colet A, Jaeger J, Jiménez-Guri E. Non-canonical dorsoventral patterning in the moth midge Clogmia albipunctata. Evodevo. 8: 20. PMID 29158889 DOI: 10.1186/s13227-017-0083-9  0.331
2017 Verd B, Crombach A, Jaeger J. Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression. Plos Computational Biology. 13: e1005285. PMID 28158178 DOI: 10.1371/journal.pcbi.1005285  0.586
2016 Hoermann A, Cicin-Sain D, Jaeger J. A quantitative validated model reveals two phases of transcriptional regulation for the gap gene giant in Drosophila. Developmental Biology. PMID 26806702 DOI: 10.1016/j.ydbio.2016.01.005  0.806
2016 Crombach A, Wotton KR, Jiménez-Guri E, Jaeger J. Gap gene regulatory dynamics evolve along a genotype network. Molecular Biology and Evolution. PMID 26796549 DOI: 10.1093/molbev/msw013  0.553
2015 Jaeger J, Monk N. Everything flows: A process perspective on life. Embo Reports. 16: 1064-7. PMID 26276845 DOI: 10.15252/embr.201541088  0.32
2015 Wotton KR, Jiménez-Guri E, Crombach A, Cicin-Sain D, Jaeger J. High-resolution gene expression data from blastoderm embryos of the scuttle fly Megaselia abdita. Scientific Data. 2: 150005. PMID 25977812 DOI: 10.1038/sdata.2015.5  0.581
2015 Villaverde AF, Henriques D, Smallbone K, Bongard S, Schmid J, Cicin-Sain D, Crombach A, Saez-Rodriguez J, Mauch K, Balsa-Canto E, Mendes P, Jaeger J, Banga JR. BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. Bmc Systems Biology. 9: 8. PMID 25880925 DOI: 10.1186/S12918-015-0144-4  0.318
2015 Jaeger J, Laubichler M, Callebaut W. The Comet Cometh: Evolving Developmental Systems. Biological Theory. 10: 36-49. PMID 25798078 DOI: 10.1007/S13752-015-0203-5  0.317
2015 Wotton KR, Jiménez-Guri E, Jaeger J. Maternal co-ordinate gene regulation and axis polarity in the scuttle fly Megaselia abdita. Plos Genetics. 11: e1005042. PMID 25757102 DOI: 10.1371/journal.pgen.1005042  0.453
2015 Wotton KR, Jiménez-Guri E, Crombach A, Janssens H, Alcaine-Colet A, Lemke S, Schmidt-Ott U, Jaeger J. Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita. Elife. 4. PMID 25560971 DOI: 10.7554/Elife.04785  0.779
2015 Cicin-Sain D, Pulido AH, Crombach A, Wotton KR, Jiménez-Guri E, Taly JF, Roma G, Jaeger J. SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. Nucleic Acids Research. 43: D751-5. PMID 25404137 DOI: 10.1093/nar/gku1142  0.543
2014 Crombach A, García-Solache MA, Jaeger J. Evolution of early development in dipterans: reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae). Bio Systems. 123: 74-85. PMID 24911671 DOI: 10.1016/j.biosystems.2014.06.003  0.544
2014 Jaeger J, Monk N. Bioattractors: dynamical systems theory and the evolution of regulatory processes. The Journal of Physiology. 592: 2267-81. PMID 24882812 DOI: 10.1113/jphysiol.2014.272385  0.354
2014 Verd B, Crombach A, Jaeger J. Classification of transient behaviours in a time-dependent toggle switch model. Bmc Systems Biology. 8: 43. PMID 24708864 DOI: 10.1186/1752-0509-8-43  0.376
2014 Jiménez-Guri E, Wotton KR, Gavilán B, Jaeger J. A staging scheme for the development of the moth midge Clogmia albipunctata. Plos One. 9: e84422. PMID 24409296 DOI: 10.1371/journal.pone.0084422  0.35
2014 Wotton KR, Jiménez-Guri E, García Matheu B, Jaeger J. A staging scheme for the development of the scuttle fly Megaselia abdita. Plos One. 9: e84421. PMID 24409295 DOI: 10.1371/journal.pone.0084421  0.358
2014 Janssens H, Siggens K, Cicin-Sain D, Jiménez-Guri E, Musy M, Akam M, Jaeger J. A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos. Evodevo. 5: 1. PMID 24393251 DOI: 10.1186/2041-9139-5-1  0.801
2014 Wotton KR, Jiménez-Guri E, Crombach A, Janssens H, Alcaine-Colet A, Lemke S, Schmidt-Ott U, Jaeger J. Author response: Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita Elife. DOI: 10.7554/Elife.04785.023  0.728
2014 Green S, Fagan M, Jaeger J. Explanatory Integration Challenges in Evolutionary Systems Biology Biological Theory. 10: 18-35. DOI: 10.1007/S13752-014-0185-8  0.324
2013 Becker K, Balsa-Canto E, Cicin-Sain D, Hoermann A, Janssens H, Banga JR, Jaeger J. Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster. Plos Computational Biology. 9: e1003281. PMID 24204230 DOI: 10.1371/journal.pcbi.1003281  0.781
2013 Wotton KR, Alcaine Colet A, Jaeger J, Jimenez-Guri E. Evolution and expression of BMP genes in flies. Development Genes and Evolution. 223: 335-40. PMID 23595982 DOI: 10.1007/s00427-013-0445-9  0.457
2013 Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J. Comparative transcriptomics of early dipteran development. Bmc Genomics. 14: 123. PMID 23432914 DOI: 10.1186/1471-2164-14-123  0.39
2013 Janssens H, Crombach A, Wotton KR, Cicin-Sain D, Surkova S, Lim CL, Samsonova M, Akam M, Jaeger J. Lack of tailless leads to an increase in expression variability in Drosophila embryos. Developmental Biology. 377: 305-17. PMID 23333944 DOI: 10.1016/j.ydbio.2013.01.010  0.785
2012 Jaeger J, Manu, Reinitz J. Drosophila blastoderm patterning. Current Opinion in Genetics & Development. 22: 533-41. PMID 23290311 DOI: 10.1016/j.gde.2012.10.005  0.713
2012 Jaeger J, Irons D, Monk N. The inheritance of process: a dynamical systems approach. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 318: 591-612. PMID 23060018 DOI: 10.1002/jez.b.22468  0.368
2012 Crombach A, Cicin-Sain D, Wotton KR, Jaeger J. Medium-throughput processing of whole mount in situ hybridisation experiments into gene expression domains. Plos One. 7: e46658. PMID 23029561 DOI: 10.1371/journal.pone.0046658  0.559
2012 Jaeger J, Crombach A. Life's attractors : understanding developmental systems through reverse engineering and in silico evolution. Advances in Experimental Medicine and Biology. 751: 93-119. PMID 22821455 DOI: 10.1007/978-1-4614-3567-9_5  0.497
2012 Crombach A, Wotton KR, Cicin-Sain D, Ashyraliyev M, Jaeger J. Efficient reverse-engineering of a developmental gene regulatory network. Plos Computational Biology. 8: e1002589. PMID 22807664 DOI: 10.1371/journal.pcbi.1002589  0.518
2012 Bryson RW, Jaeger JR, Lemos-Espinal JA, Lazcano D. A multilocus perspective on the speciation history of a North American aridland toad (Anaxyrus punctatus). Molecular Phylogenetics and Evolution. 64: 393-400. PMID 22579923 DOI: 10.1016/J.Ympev.2012.04.014  0.312
2012 Crombach A, Wotton KR, Cicin-Sain D, Ashyraliyev M, Jaeger J. The gene circuit method. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1002589.G001  0.391
2011 Jaeger J. The gap gene network. Cellular and Molecular Life Sciences : Cmls. 68: 243-74. PMID 20927566 DOI: 10.1007/s00018-010-0536-y  0.551
2010 Jaeger J. A matter of timing and precision. Molecular Systems Biology. 6: 427; author reply 42. PMID 21081921 DOI: 10.1038/msb.2010.85  0.307
2010 García-Solache M, Jaeger J, Akam M. A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata. Developmental Biology. 344: 306-18. PMID 20433825 DOI: 10.1016/j.ydbio.2010.04.019  0.581
2010 Jostins L, Jaeger J. Reverse engineering a gene network using an asynchronous parallel evolution strategy. Bmc Systems Biology. 4: 17. PMID 20196855 DOI: 10.1186/1752-0509-4-17  0.388
2009 Jaeger J. Modelling the Drosophila embryo. Molecular Biosystems. 5: 1549-68. PMID 20023719 DOI: 10.1039/b904722k  0.41
2009 Ashyraliyev M, Siggens K, Janssens H, Blom J, Akam M, Jaeger J. Gene circuit analysis of the terminal gap gene huckebein. Plos Computational Biology. 5: e1000548. PMID 19876378 DOI: 10.1371/journal.pcbi.1000548  0.806
2009 Jaeger J, Martinez-Arias A. Getting the measure of positional information. Plos Biology. 7: e81. PMID 19338391 DOI: 10.1371/journal.pbio.1000081  0.352
2008 Ashyraliyev M, Jaeger J, Blom JG. Parameter estimation and determinability analysis applied to Drosophila gap gene circuits. Bmc Systems Biology. 2: 83. PMID 18817540 DOI: 10.1186/1752-0509-2-83  0.4
2008 Jaeger J, Irons D, Monk N. Regulative feedback in pattern formation: towards a general relativistic theory of positional information. Development (Cambridge, England). 135: 3175-83. PMID 18776142 DOI: 10.1242/dev.018697  0.342
2007 Jaeger J, Sharp DH, Reinitz J. Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster. Mechanisms of Development. 124: 108-28. PMID 17196796 DOI: 10.1016/j.mod.2006.11.001  0.754
2006 Jaeger J, Reinitz J. On the dynamic nature of positional information. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 1102-11. PMID 17041900 DOI: 10.1002/bies.20494  0.686
2006 Janssens H, Hou S, Jaeger J, Kim AR, Myasnikova E, Sharp D, Reinitz J. Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nature Genetics. 38: 1159-65. PMID 16980977 DOI: 10.1038/Ng1886  0.776
2006 Perkins TJ, Jaeger J, Reinitz J, Glass L. Reverse engineering the gap gene network of Drosophila melanogaster. Plos Computational Biology. 2: e51. PMID 16710449 DOI: 10.1371/Journal.Pcbi.0020051  0.751
2005 Janssens H, Kosman D, Vanario-Alonso CE, Jaeger J, Samsonova M, Reinitz J. A high-throughput method for quantifying gene expression data from early Drosophila embryos. Development Genes and Evolution. 215: 374-81. PMID 15834586 DOI: 10.1007/s00427-005-0484-y  0.755
2004 Jaeger J, Blagov M, Kosman D, Kozlov KN, Manu, Myasnikova E, Surkova S, Vanario-Alonso CE, Samsonova M, Sharp DH, Reinitz J. Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics. 167: 1721-37. PMID 15342511 DOI: 10.1534/genetics.104.027334  0.759
2004 Jaeger J, Surkova S, Blagov M, Janssens H, Kosman D, Kozlov KN, Manu, Myasnikova E, Vanario-Alonso CE, Samsonova M, Sharp DH, Reinitz J. Dynamic control of positional information in the early Drosophila embryo. Nature. 430: 368-71. PMID 15254541 DOI: 10.1038/nature02678  0.796
2004 Punzo C, Plaza S, Seimiya M, Schnupf P, Kurata S, Jaeger J, Gehring WJ. Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster. Development (Cambridge, England). 131: 3943-53. PMID 15253940 DOI: 10.1242/dev.01278  0.524
2004 Gursky VV, Jaeger J, Kozlov KN, Reinitz J, Samsonov AM. Pattern formation and nuclear divisions are uncoupled in drosophila segmentation: Comparison of spatially discrete and continuous models Physica D: Nonlinear Phenomena. 197: 286-302. DOI: 10.1016/j.physd.2004.07.003  0.652
2002 Jaeger J, Goodwin BC. Cellular oscillators in animal segmentation. In Silico Biology. 2: 111-23. PMID 12066836  0.377
2001 Jaeger J, Goodwin BC. A cellular oscillator model for periodic pattern formation Journal of Theoretical Biology. 213: 171-181. PMID 11894989 DOI: 10.1006/jtbi.2001.2414  0.426
2001 Plaza S, Prince F, Jaeger J, Kloter U, Flister S, Benassayag C, Cribbs D, Gehring WJ. Molecular basis for the inhibition of Drosophila eye development by Antennapedia. The Embo Journal. 20: 802-11. PMID 11179224 DOI: 10.1093/Emboj/20.4.802  0.558
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