Johannes Jaeger - Publications

Affiliations: 
University of Cambridge, Cambridge, England, United Kingdom 
Area:
segment determination, gap gene system, evodevo

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Verd B, Monk NA, Jaeger J. Modularity, criticality, and evolvability of a developmental gene regulatory network. Elife. 8. PMID 31169494 DOI: 10.7554/eLife.42832  0.32
2018 Jiménez-Guri E, Wotton KR, Jaeger J. is expressed as a gap gene but has no gap gene phenotype in the moth midge . Royal Society Open Science. 5: 180458. PMID 30225035 DOI: 10.1098/rsos.180458  1
2018 Verd B, Clark E, Wotton KR, Janssens H, Jiménez-Guri E, Crombach A, Jaeger J. A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila. Plos Biology. 16: e2003174. PMID 29451884 DOI: 10.1371/journal.pbio.2003174  1
2017 Verd B, Crombach A, Jaeger J. Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression. Plos Computational Biology. 13: e1005285. PMID 28158178 DOI: 10.1371/journal.pcbi.1005285  1
2016 Hoermann A, Cicin-Sain D, Jaeger J. A quantitative validated model reveals two phases of transcriptional regulation for the gap gene giant in Drosophila. Developmental Biology. PMID 26806702 DOI: 10.1016/j.ydbio.2016.01.005  1
2016 Crombach A, Wotton KR, Jiménez-Guri E, Jaeger J. Gap gene regulatory dynamics evolve along a genotype network. Molecular Biology and Evolution. PMID 26796549 DOI: 10.1093/molbev/msw013  1
2015 Wotton KR, Jiménez-Guri E, Crombach A, Cicin-Sain D, Jaeger J. High-resolution gene expression data from blastoderm embryos of the scuttle fly Megaselia abdita. Scientific Data. 2: 150005. PMID 25977812 DOI: 10.1038/sdata.2015.5  1
2015 Villaverde AF, Henriques D, Smallbone K, Bongard S, Schmid J, Cicin-Sain D, Crombach A, Saez-Rodriguez J, Mauch K, Balsa-Canto E, Mendes P, Jaeger J, Banga JR. BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. Bmc Systems Biology. 9: 8. PMID 25880925 DOI: 10.1186/s12918-015-0144-4  1
2015 Wotton KR, Jiménez-Guri E, Jaeger J. Maternal co-ordinate gene regulation and axis polarity in the scuttle fly Megaselia abdita. Plos Genetics. 11: e1005042. PMID 25757102 DOI: 10.1371/journal.pgen.1005042  1
2015 Wotton KR, Jiménez-Guri E, Crombach A, Janssens H, Alcaine-Colet A, Lemke S, Schmidt-Ott U, Jaeger J. Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita. Elife. 4. PMID 25560971 DOI: 10.7554/eLife.04785  1
2015 Cicin-Sain D, Pulido AH, Crombach A, Wotton KR, Jiménez-Guri E, Taly JF, Roma G, Jaeger J. SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. Nucleic Acids Research. 43: D751-5. PMID 25404137 DOI: 10.1093/nar/gku1142  1
2015 Jaeger J, Monk N. Everything flows: A process perspective on life Everything flows : A process perspective on life Johannes Jaeger and Nick Monk Embo Reports. DOI: 10.15252/embr.201541088  1
2014 Crombach A, García-Solache MA, Jaeger J. Evolution of early development in dipterans: reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae). Bio Systems. 123: 74-85. PMID 24911671 DOI: 10.1016/j.biosystems.2014.06.003  1
2014 Jaeger J, Monk N. Bioattractors: dynamical systems theory and the evolution of regulatory processes. The Journal of Physiology. 592: 2267-81. PMID 24882812 DOI: 10.1113/jphysiol.2014.272385  1
2014 Verd B, Crombach A, Jaeger J. Classification of transient behaviours in a time-dependent toggle switch model. Bmc Systems Biology. 8: 43. PMID 24708864 DOI: 10.1186/1752-0509-8-43  1
2014 Jiménez-Guri E, Wotton KR, Gavilán B, Jaeger J. A staging scheme for the development of the moth midge Clogmia albipunctata. Plos One. 9: e84422. PMID 24409296 DOI: 10.1371/journal.pone.0084422  1
2014 Wotton KR, Jiménez-Guri E, García Matheu B, Jaeger J. A staging scheme for the development of the scuttle fly Megaselia abdita. Plos One. 9: e84421. PMID 24409295 DOI: 10.1371/journal.pone.0084421  1
2014 Janssens H, Siggens K, Cicin-Sain D, Jiménez-Guri E, Musy M, Akam M, Jaeger J. A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos. Evodevo. 5: 1. PMID 24393251 DOI: 10.1186/2041-9139-5-1  1
2013 Becker K, Balsa-Canto E, Cicin-Sain D, Hoermann A, Janssens H, Banga JR, Jaeger J. Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster. Plos Computational Biology. 9: e1003281. PMID 24204230 DOI: 10.1371/journal.pcbi.1003281  1
2013 Wotton KR, Alcaine Colet A, Jaeger J, Jimenez-Guri E. Evolution and expression of BMP genes in flies. Development Genes and Evolution. 223: 335-40. PMID 23595982 DOI: 10.1007/s00427-013-0445-9  1
2013 Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J. Comparative transcriptomics of early dipteran development. Bmc Genomics. 14: 123. PMID 23432914 DOI: 10.1186/1471-2164-14-123  1
2013 Janssens H, Crombach A, Wotton KR, Cicin-Sain D, Surkova S, Lim CL, Samsonova M, Akam M, Jaeger J. Lack of tailless leads to an increase in expression variability in Drosophila embryos. Developmental Biology. 377: 305-17. PMID 23333944 DOI: 10.1016/j.ydbio.2013.01.010  1
2012 Jaeger J, Manu, Reinitz J. Drosophila blastoderm patterning. Current Opinion in Genetics & Development. 22: 533-41. PMID 23290311 DOI: 10.1016/j.gde.2012.10.005  1
2012 Jaeger J, Irons D, Monk N. The inheritance of process: a dynamical systems approach. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 318: 591-612. PMID 23060018 DOI: 10.1002/jez.b.22468  1
2012 Crombach A, Cicin-Sain D, Wotton KR, Jaeger J. Medium-throughput processing of whole mount in situ hybridisation experiments into gene expression domains. Plos One. 7: e46658. PMID 23029561 DOI: 10.1371/journal.pone.0046658  1
2012 Jaeger J, Crombach A. Life's attractors : understanding developmental systems through reverse engineering and in silico evolution. Advances in Experimental Medicine and Biology. 751: 93-119. PMID 22821455 DOI: 10.1007/978-1-4614-3567-9_5  1
2012 Crombach A, Wotton KR, Cicin-Sain D, Ashyraliyev M, Jaeger J. Efficient reverse-engineering of a developmental gene regulatory network. Plos Computational Biology. 8: e1002589. PMID 22807664 DOI: 10.1371/journal.pcbi.1002589  1
2011 Jaeger J. The gap gene network. Cellular and Molecular Life Sciences : Cmls. 68: 243-74. PMID 20927566 DOI: 10.1007/s00018-010-0536-y  1
2010 Jaeger J. A matter of timing and precision. Molecular Systems Biology. 6: 427; author reply 42. PMID 21081921 DOI: 10.1038/msb.2010.85  1
2010 García-Solache M, Jaeger J, Akam M. A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata. Developmental Biology. 344: 306-18. PMID 20433825 DOI: 10.1016/j.ydbio.2010.04.019  1
2010 Jostins L, Jaeger J. Reverse engineering a gene network using an asynchronous parallel evolution strategy. Bmc Systems Biology. 4: 17. PMID 20196855 DOI: 10.1186/1752-0509-4-17  1
2009 Jaeger J. Modelling the Drosophila embryo. Molecular Biosystems. 5: 1549-68. PMID 20023719 DOI: 10.1039/b904722k  1
2009 Ashyraliyev M, Siggens K, Janssens H, Blom J, Akam M, Jaeger J. Gene circuit analysis of the terminal gap gene huckebein. Plos Computational Biology. 5: e1000548. PMID 19876378 DOI: 10.1371/journal.pcbi.1000548  1
2009 Jaeger J, Martinez-Arias A. Getting the measure of positional information. Plos Biology. 7: e81. PMID 19338391 DOI: 10.1371/journal.pbio.1000081  1
2008 Ashyraliyev M, Jaeger J, Blom JG. Parameter estimation and determinability analysis applied to Drosophila gap gene circuits. Bmc Systems Biology. 2: 83. PMID 18817540 DOI: 10.1186/1752-0509-2-83  1
2008 Jaeger J, Irons D, Monk N. Regulative feedback in pattern formation: towards a general relativistic theory of positional information. Development (Cambridge, England). 135: 3175-83. PMID 18776142 DOI: 10.1242/dev.018697  1
2007 Jaeger J, Sharp DH, Reinitz J. Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster. Mechanisms of Development. 124: 108-28. PMID 17196796 DOI: 10.1016/j.mod.2006.11.001  1
2006 Jaeger J, Reinitz J. On the dynamic nature of positional information. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 1102-11. PMID 17041900 DOI: 10.1002/bies.20494  1
2006 Janssens H, Hou S, Jaeger J, Kim AR, Myasnikova E, Sharp D, Reinitz J. Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nature Genetics. 38: 1159-65. PMID 16980977 DOI: 10.1038/ng1886  1
2006 Perkins TJ, Jaeger J, Reinitz J, Glass L. Reverse engineering the gap gene network of Drosophila melanogaster. Plos Computational Biology. 2: e51. PMID 16710449 DOI: 10.1371/journal.pcbi.0020051  1
2005 Janssens H, Kosman D, Vanario-Alonso CE, Jaeger J, Samsonova M, Reinitz J. A high-throughput method for quantifying gene expression data from early Drosophila embryos. Development Genes and Evolution. 215: 374-81. PMID 15834586 DOI: 10.1007/s00427-005-0484-y  1
2004 Jaeger J, Blagov M, Kosman D, Kozlov KN, Manu, Myasnikova E, Surkova S, Vanario-Alonso CE, Samsonova M, Sharp DH, Reinitz J. Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics. 167: 1721-37. PMID 15342511 DOI: 10.1534/genetics.104.027334  1
2004 Jaeger J, Surkova S, Blagov M, Janssens H, Kosman D, Kozlov KN, Manu, Myasnikova E, Vanario-Alonso CE, Samsonova M, Sharp DH, Reinitz J. Dynamic control of positional information in the early Drosophila embryo. Nature. 430: 368-71. PMID 15254541 DOI: 10.1038/nature02678  1
2004 Punzo C, Plaza S, Seimiya M, Schnupf P, Kurata S, Jaeger J, Gehring WJ. Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster. Development (Cambridge, England). 131: 3943-53. PMID 15253940 DOI: 10.1242/dev.01278  1
2004 Gursky VV, Jaeger J, Kozlov KN, Reinitz J, Samsonov AM. Pattern formation and nuclear divisions are uncoupled in drosophila segmentation: Comparison of spatially discrete and continuous models Physica D: Nonlinear Phenomena. 197: 286-302. DOI: 10.1016/j.physd.2004.07.003  1
2002 Jaeger J, Goodwin BC. Cellular oscillators in animal segmentation. In Silico Biology. 2: 111-23. PMID 12066836  1
2001 Jaeger J, Goodwin BC. A cellular oscillator model for periodic pattern formation Journal of Theoretical Biology. 213: 171-181. PMID 11894989 DOI: 10.1006/jtbi.2001.2414  1
2001 Plaza S, Prince F, Jaeger J, Kloter U, Flister S, Benassayag C, Cribbs D, Gehring WJ. Molecular basis for the inhibition of Drosophila eye development by Antennapedia. The Embo Journal. 20: 802-11. PMID 11179224 DOI: 10.1093/emboj/20.4.802  1
1991 Jaeger JL, Shimizu N, Gitlin JD. Tissue-specific ceruloplasmin gene expression in the mammary gland. The Biochemical Journal. 280: 671-7. PMID 1764031  1
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