Jonathan K. Pritchard - Publications

Affiliations: 
University of Chicago, Chicago, IL 

123 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rosenberg NA, Edge MD, Pritchard JK, Feldman MW. Interpreting polygenic scores, polygenic adaptation, and human phenotypic differences. Evolution, Medicine, and Public Health. 2019: 26-34. PMID 30838127 DOI: 10.1093/emph/eoy036  1
2018 Knowles DA, Burrows CK, Blischak JD, Patterson KM, Serie DJ, Norton N, Ober C, Pritchard JK, Gilad Y. Determining the genetic basis of anthracycline-cardiotoxicity by response QTL mapping in induced cardiomyocytes. Elife. 7. PMID 29737278 DOI: 10.7554/eLife.33480  0.52
2017 Banovich NE, Li YI, Raj A, Ward MC, Greenside P, Calderon D, Tung PY, Burnett JE, Myrthil M, Thomas SM, Burrows CK, Romero IG, Pavlovic BJ, Kundaje A, Pritchard JK, et al. Impact of regulatory variation across human iPSCs and differentiated cells. Genome Research. PMID 29208628 DOI: 10.1101/gr.224436.117  0.48
2017 Nielsen R, Akey JM, Jakobsson M, Pritchard JK, Tishkoff S, Willerslev E. Tracing the peopling of the world through genomics. Nature. 541: 302-310. PMID 28102248 DOI: 10.1038/nature21347  0.6
2017 Tung PY, Blischak JD, Hsiao CJ, Knowles DA, Burnett JE, Pritchard JK, Gilad Y. Batch effects and the effective design of single-cell gene expression studies. Scientific Reports. 7: 39921. PMID 28045081 DOI: 10.1038/srep39921  0.48
2016 Telis N, Lehmann BV, Feldman MW, Pritchard JK. A Bibliometric History of the Journal GENETICS. Genetics. 204: 1337-1342. PMID 27927899 DOI: 10.1534/genetics.116.196964  1
2016 Field Y, Boyle EA, Telis N, Gao Z, Gaulton KJ, Golan D, Yengo L, Rocheleau G, Froguel P, McCarthy MI, Pritchard JK. Detection of human adaptation during the past 2000 years. Science (New York, N.Y.). PMID 27738015 DOI: 10.1126/science.aag0776  0.44
2016 Corces MR, Buenrostro JD, Wu B, Greenside PG, Chan SM, Koenig JL, Snyder MP, Pritchard JK, Kundaje A, Greenleaf WJ, Majeti R, Chang HY. Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution. Nature Genetics. PMID 27526324 DOI: 10.1038/ng.3646  1
2016 Sharon E, Sibener LV, Battle A, Fraser HB, Garcia KC, Pritchard JK. Genetic variation in MHC proteins is associated with T cell receptor expression biases. Nature Genetics. PMID 27479906 DOI: 10.1038/ng.3625  1
2016 Raj A, Wang SH, Shim H, Harpak A, Li YI, Engelmann B, Stephens M, Gilad Y, Pritchard JK. Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling. Elife. 5. PMID 27232982 DOI: 10.7554/eLife.13328  1
2016 Lan X, Pritchard JK. Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals. Science (New York, N.Y.). 352: 1009-13. PMID 27199432 DOI: 10.1126/science.aad8411  1
2016 Li YI, van de Geijn B, Raj A, Knowles DA, Petti AA, Golan D, Gilad Y, Pritchard JK. RNA splicing is a primary link between genetic variation and disease. Science (New York, N.Y.). 352: 600-4. PMID 27126046 DOI: 10.1126/science.aad9417  1
2016 Burrows CK, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK, Gilad Y. Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs. Plos Genetics. 12: e1005793. PMID 26812582 DOI: 10.1371/journal.pgen.1005793  0.48
2015 Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET, Guan P, Korzeniewski GE, Lockhart NC, Rabiner CA, Rao AK, et al. A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project. Biopreservation and Biobanking. 13: 311-9. PMID 26484571 DOI: 10.1089/bio.2015.0032  1
2015 Raj A, Shim H, Gilad Y, Pritchard JK, Stephens M. msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding. Plos One. 10: e0138030. PMID 26406244 DOI: 10.1371/journal.pone.0138030  1
2015 van de Geijn B, McVicker G, Gilad Y, Pritchard JK. WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nature Methods. 12: 1061-3. PMID 26366987 DOI: 10.1038/nmeth.3582  1
2015 Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, et al. Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions. Cell. PMID 26300125 DOI: 10.1016/j.cell.2015.07.048  1
2015 Thomas SM, Kagan C, Pavlovic BJ, Burnett J, Patterson K, Pritchard JK, Gilad Y. Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature. Plos Genetics. 11: e1005216. PMID 25950834 DOI: 10.1371/journal.pgen.1005216  1
2015 Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y. Genomic variation. Impact of regulatory variation from RNA to protein. Science (New York, N.Y.). 347: 664-7. PMID 25657249 DOI: 10.1126/science.1260793  1
2015 Pai AA, Pritchard JK, Gilad Y. The genetic and mechanistic basis for variation in gene regulation. Plos Genetics. 11: e1004857. PMID 25569255 DOI: 10.1371/journal.pgen.1004857  1
2015 Ardlie KG, DeLuca DS, Segrè AV, Sullivan TJ, Young TR, Gelfand ET, Trowbridge CA, Maller JB, Tukiainen T, Lek M, Ward LD, Kheradpour P, Iriarte B, Meng Y, Palmer CD, ... ... Pritchard JK, et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans Science. 348: 648-660. DOI: 10.1126/science.1262110  1
2014 Zhou X, Cain CE, Myrthil M, Lewellen N, Michelini K, Davenport ER, Stephens M, Pritchard JK, Gilad Y. Epigenetic modifications are associated with inter-species gene expression variation in primates. Genome Biology. 15: 547. PMID 25468404 DOI: 10.1186/s13059-014-0547-3  1
2014 Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. Plos Genetics. 10: e1004663. PMID 25233095 DOI: 10.1371/journal.pgen.1004663  1
2014 Çal??kan M, Pritchard JK, Ober C, Gilad Y. The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines. Plos One. 9: e107166. PMID 25192014 DOI: 10.1371/journal.pone.0107166  1
2014 Raj A, Stephens M, Pritchard JK. fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics. 197: 573-89. PMID 24700103 DOI: 10.1534/genetics.114.164350  1
2014 Cusanovich DA, Pavlovic B, Pritchard JK, Gilad Y. The functional consequences of variation in transcription factor binding. Plos Genetics. 10: e1004226. PMID 24603674 DOI: 10.1371/journal.pgen.1004226  1
2014 Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, Beall CM, Di Rienzo A. Admixture facilitates genetic adaptations to high altitude in Tibet. Nature Communications. 5: 3281. PMID 24513612 DOI: 10.1038/ncomms4281  1
2014 Simons YB, Turchin MC, Pritchard JK, Sella G. The deleterious mutation load is insensitive to recent population history. Nature Genetics. 46: 220-4. PMID 24509481 DOI: 10.1038/ng.2896  1
2014 Nalabothula N, McVicker G, Maiorano J, Martin R, Pritchard JK, Fondufe-Mittendorf YN. The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation. Bmc Genomics. 15: 92. PMID 24484546 DOI: 10.1186/1471-2164-15-92  1
2014 Birney E, Pritchard JK. Archaic humans: Four makes a party. Nature. 505: 32-4. PMID 24352230 DOI: 10.1038/nature12847  1
2013 McVicker G, van de Geijn B, Degner JF, Cain CE, Banovich NE, Raj A, Lewellen N, Myrthil M, Gilad Y, Pritchard JK. Identification of genetic variants that affect histone modifications in human cells. Science (New York, N.Y.). 342: 747-9. PMID 24136359 DOI: 10.1126/science.1242429  1
2013 Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y. Primate transcript and protein expression levels evolve under compensatory selection pressures. Science (New York, N.Y.). 342: 1100-4. PMID 24136357 DOI: 10.1126/science.1242379  1
2013 Lonsdale J, Thomas J, Salvatore M, Phillips R, Lo E, Shad S, Hasz R, Walters G, Garcia F, Young N, Foster B, Moser M, Karasik E, Gillard B, Ramsey K, ... ... Pritchard J, et al. The Genotype-Tissue Expression (GTEx) project Nature Genetics. 45: 580-585. PMID 23715323 DOI: 10.1038/ng.2653  1
2013 Flutre T, Wen X, Pritchard J, Stephens M. A statistical framework for joint eQTL analysis in multiple tissues. Plos Genetics. 9: e1003486. PMID 23671422 DOI: 10.1371/journal.pgen.1003486  1
2013 Noor MA. The 2013 Novitski Prize: Jonathan Pritchard. Genetics. 194: 15-7. PMID 23633137 DOI: 10.1534/genetics.113.150706  1
2012 Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, Di Rienzo A. The genetic architecture of adaptations to high altitude in Ethiopia. Plos Genetics. 8: e1003110. PMID 23236293 DOI: 10.1371/journal.pgen.1003110  1
2012 Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK. Controls of nucleosome positioning in the human genome. Plos Genetics. 8: e1003036. PMID 23166509 DOI: 10.1371/journal.pgen.1003036  1
2012 Pickrell JK, Pritchard JK. Inference of population splits and mixtures from genome-wide allele frequency data. Plos Genetics. 8: e1002967. PMID 23166502 DOI: 10.1371/journal.pgen.1002967  1
2012 Pai AA, Cain CE, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras JB, Degner JF, Gaffney DJ, Pickrell JK, Stephens M, Pritchard JK, Gilad Y. The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. Plos Genetics. 8: e1003000. PMID 23071454 DOI: 10.1371/journal.pgen.1003000  1
2012 Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E. Genomics: ENCODE explained. Nature. 489: 52-5. PMID 22955614 DOI: 10.1038/489052a  1
2012 Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, Singh H. DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina. Cell. 149: 1474-87. PMID 22726435 DOI: 10.1016/j.cell.2012.04.035  1
2012 Pickrell JK, Gilad Y, Pritchard JK. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science (New York, N.Y.). 335: 1302; author reply 1. PMID 22422963 DOI: 10.1126/science.1210484  1
2012 Veyrieras JB, Gaffney DJ, Pickrell JK, Gilad Y, Stephens M, Pritchard JK. Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data. Plos One. 7: e30629. PMID 22359548 DOI: 10.1371/journal.pone.0030629  1
2012 MacArthur DG, Balasubramanian S, Frankish A, Huang N, Morris J, Walter K, Jostins L, Habegger L, Pickrell JK, Montgomery SB, Albers CA, Zhang ZD, Conrad DF, Lunter G, Zheng H, ... ... Pritchard JK, et al. A systematic survey of loss-of-function variants in human protein-coding genes. Science (New York, N.Y.). 335: 823-8. PMID 22344438 DOI: 10.1126/science.1215040  1
2012 Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK. DNase I sensitivity QTLs are a major determinant of human expression variation. Nature. 482: 390-4. PMID 22307276 DOI: 10.1038/nature10808  1
2012 Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Dissecting the regulatory architecture of gene expression QTLs. Genome Biology. 13: R7. PMID 22293038 DOI: 10.1186/gb-2012-13-1-r7  1
2012 Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome Research. 22: 602-10. PMID 22207615 DOI: 10.1101/gr.130468.111  1
2012 Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE, Pritchard JK, Mason CE, Gilad Y. A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biology and Evolution. 4: 126-35. PMID 22155688 DOI: 10.1093/gbe/evr132  1
2011 Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA. Haplotype variation and genotype imputation in African populations. Genetic Epidemiology. 35: 766-80. PMID 22125220 DOI: 10.1002/gepi.20626  1
2011 Pritchard JK. Whole-genome sequencing data offer insights into human demography. Nature Genetics. 43: 923-5. PMID 21956387 DOI: 10.1038/ng.953  1
2011 Melsted P, Pritchard JK. Efficient counting of k-mers in DNA sequences using a bloom filter. Bmc Bioinformatics. 12: 333. PMID 21831268 DOI: 10.1186/1471-2105-12-333  1
2011 Pickrell JK, Gaffney DJ, Gilad Y, Pritchard JK. False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. Bioinformatics (Oxford, England). 27: 2144-6. PMID 21690102 DOI: 10.1093/bioinformatics/btr354  1
2011 Hancock AM, Witonsky DB, Alkorta-Aranburu G, Beall CM, Gebremedhin A, Sukernik R, Utermann G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate-mediated selective pressures in humans. Plos Genetics. 7: e1001375. PMID 21533023 DOI: 10.1371/journal.pgen.1001375  1
2011 Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y. A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues. Plos Genetics. 7: e1001316. PMID 21383968 DOI: 10.1371/journal.pgen.1001316  1
2011 Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biology. 12: R10. PMID 21251332 DOI: 10.1186/gb-2011-12-1-r10  1
2011 Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Research. 21: 447-55. PMID 21106904 DOI: 10.1101/gr.112623.110  1
2011 Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. Correction: DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines Genome Biology. 12. DOI: 10.1186/gb-2011-12-6-405  1
2010 Pickrell JK, Pai AA, Gilad Y, Pritchard JK. Noisy splicing drives mRNA isoform diversity in human cells. Plos Genetics. 6: e1001236. PMID 21151575 DOI: 10.1371/journal.pgen.1001236  1
2010 Pritchard JK. How we are evolving. Scientific American. 303: 40-7. PMID 20923127 DOI: 10.1038/scientificamerican1010-40  1
2010 Pritchard JK, Di Rienzo A. Adaptation - not by sweeps alone. Nature Reviews. Genetics. 11: 665-7. PMID 20838407 DOI: 10.1038/nrg2880  1
2010 Coop G, Witonsky D, Di Rienzo A, Pritchard JK. Using environmental correlations to identify loci underlying local adaptation. Genetics. 185: 1411-23. PMID 20516501 DOI: 10.1534/genetics.110.114819  1
2010 Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A. Colloquium paper: human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency. Proceedings of the National Academy of Sciences of the United States of America. 107: 8924-30. PMID 20445095 DOI: 10.1073/pnas.0914625107  1
2010 Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 464: 768-72. PMID 20220758 DOI: 10.1038/nature08872  1
2010 Pritchard JK, Pickrell JK, Coop G. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Current Biology : Cb. 20: R208-15. PMID 20178769 DOI: 10.1016/j.cub.2009.11.055  1
2009 Hubisz MJ, Falush D, Stephens M, Pritchard JK. Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources. 9: 1322-32. PMID 21564903 DOI: 10.1111/j.1755-0998.2009.02591.x  1
2009 Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, Gilad Y, Pritchard JK. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics (Oxford, England). 25: 3207-12. PMID 19808877 DOI: 10.1093/bioinformatics/btp579  1
2009 Gilad Y, Pritchard JK, Thornton K. Characterizing natural variation using next-generation sequencing technologies. Trends in Genetics : Tig. 25: 463-71. PMID 19801172 DOI: 10.1016/j.tig.2009.09.003  1
2009 Coop G, Pickrell JK, Novembre J, Kudaravalli S, Li J, Absher D, Myers RM, Cavalli-Sforza LL, Feldman MW, Pritchard JK. The role of geography in human adaptation. Plos Genetics. 5: e1000500. PMID 19503611 DOI: 10.1371/journal.pgen.1000500  1
2009 Davison D, Pritchard JK, Coop G. An approximate likelihood for genetic data under a model with recombination and population splitting. Theoretical Population Biology. 75: 331-45. PMID 19362099 DOI: 10.1016/j.tpb.2009.04.001  1
2009 Pickrell JK, Coop G, Novembre J, Kudaravalli S, Li JZ, Absher D, Srinivasan BS, Barsh GS, Myers RM, Feldman MW, Pritchard JK. Signals of recent positive selection in a worldwide sample of human populations. Genome Research. 19: 826-37. PMID 19307593 DOI: 10.1101/gr.087577.108  1
2009 Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. Haplotypic background of a private allele at high frequency in the Americas. Molecular Biology and Evolution. 26: 995-1016. PMID 19221006 DOI: 10.1093/molbev/msp024  1
2009 Kudaravalli S, Veyrieras JB, Stranger BE, Dermitzakis ET, Pritchard JK. Gene expression levels are a target of recent natural selection in the human genome. Molecular Biology and Evolution. 26: 649-58. PMID 19091723 DOI: 10.1093/molbev/msn289  1
2008 Veyrieras JB, Kudaravalli S, Kim SY, Dermitzakis ET, Gilad Y, Stephens M, Pritchard JK. High-resolution mapping of expression-QTLs yields insight into human gene regulation. Plos Genetics. 4: e1000214. PMID 18846210 DOI: 10.1371/journal.pgen.1000214  1
2008 Gilad Y, Rifkin SA, Pritchard JK. Revealing the architecture of gene regulation: the promise of eQTL studies. Trends in Genetics : Tig. 24: 408-15. PMID 18597885 DOI: 10.1016/j.tig.2008.06.001  0.48
2008 Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA. Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India. Annals of Human Genetics. 72: 535-46. PMID 18513279 DOI: 10.1111/j.1469-1809.2008.00457.x  1
2008 Hancock AM, Witonsky DB, Gordon AS, Eshel G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate in candidate genes for common metabolic disorders. Plos Genetics. 4: e32. PMID 18282109 DOI: 10.1371/journal.pgen.0040032  1
2008 Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science (New York, N.Y.). 319: 1395-8. PMID 18239090 DOI: 10.1126/science.1151851  1
2007 Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes. 7: 574-578. PMID 18784791 DOI: 10.1111/j.1471-8286.2007.01758.x  1
2007 Novembre J, Pritchard JK, Coop G. Adaptive drool in the gene pool. Nature Genetics. 39: 1188-90. PMID 17898775 DOI: 10.1038/ng1007-1188  1
2007 Kim SY, Pritchard JK. Adaptive evolution of conserved noncoding elements in mammals. Plos Genetics. 3: 1572-86. PMID 17845075 DOI: 10.1371/journal.pgen.0030147  1
2007 Eichler EE, Nickerson DA, Altshuler D, Bowcock AM, Brooks LD, Carter NP, Church DM, Felsenfeld A, Guyer M, Lee C, Lupski JR, Mullikin JC, Pritchard JK, Sebat J, et al. Completing the map of human genetic variation. Nature. 447: 161-5. PMID 17495918 DOI: 10.1038/447161a  1
2007 Zollner S, Pritchard JK. Overcoming the winner's curse: estimating penetrance parameters from case-control data. American Journal of Human Genetics. 80: 605-15. PMID 17357068 DOI: 10.1086/512821  1
2007 Tishkoff SA, Reed FA, Ranciaro A, Voight BF, Babbitt CC, Silverman JS, Powell K, Mortensen HM, Hirbo JB, Osman M, Ibrahim M, Omar SA, Lema G, Nyambo TB, Ghori J, ... ... Pritchard JK, et al. Convergent adaptation of human lactase persistence in Africa and Europe. Nature Genetics. 39: 31-40. PMID 17159977 DOI: 10.1038/ng1946  1
2007 Conrad DF, Pritchard JK. Population genetics and disease Genes and Common Diseases. 44-58. DOI: 10.1017/CBO9780511543555.004  1
2006 Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM. Sequencing and analysis of Neanderthal genomic DNA. Science (New York, N.Y.). 314: 1113-8. PMID 17110569 DOI: 10.1126/science.1131412  1
2006 Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics. 38: 1251-60. PMID 17057719 DOI: 10.1038/ng1911  1
2006 Murgia C, Pritchard JK, Kim SY, Fassati A, Weiss RA. Clonal origin and evolution of a transmissible cancer. Cell. 126: 477-87. PMID 16901782 DOI: 10.1016/j.cell.2006.05.051  1
2006 Voight BF, Kudaravalli S, Wen X, Pritchard JK. A map of recent positive selection in the human genome. Plos Biology. 4: e72. PMID 16494531 DOI: 10.1371/journal.pbio.0040072  1
2006 Hellenthal G, Pritchard JK, Stephens M. The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium. Genetics. 172: 2001-5. PMID 16387890 DOI: 10.1534/genetics.104.039271  1
2006 Conrad DF, Andrews TD, Carter NP, Hurles ME, Pritchard JK. A high-resolution survey of deletion polymorphism in the human genome. Nature Genetics. 38: 75-81. PMID 16327808 DOI: 10.1038/ng1697  1
2005 Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. Clines, clusters, and the effect of study design on the inference of human population structure. Plos Genetics. 1: e70. PMID 16355252 DOI: 10.1371/journal.pgen.0010070  1
2005 Voight BF, Pritchard JK. Confounding from cryptic relatedness in case-control association studies. Plos Genetics. 1: e32. PMID 16151517 DOI: 10.1371/journal.pgen.0010032  1
2005 Zöllner S, Wen X, Pritchard JK. Association mapping and fine mapping with TreeLD. Bioinformatics (Oxford, England). 21: 3168-70. PMID 15855250 DOI: 10.1093/bioinformatics/bti453  1
2005 Zöllner S, Pritchard JK. Coalescent-based association mapping and fine mapping of complex trait loci. Genetics. 169: 1071-92. PMID 15489534 DOI: 10.1534/genetics.104.031799  1
2005 Voight BF, Pritchard JK. Confounding from cryptic in case-control association studies Plos Genetics. 1: 302-311.  1
2004 Montana G, Pritchard JK. Statistical tests for admixture mapping with case-control and cases-only data. American Journal of Human Genetics. 75: 771-89. PMID 15386213 DOI: 10.1086/425281  1
2004 Zöllner S, Wen X, Hanchard NA, Herbert MA, Ober C, Pritchard JK. Evidence for extensive transmission distortion in the human genome. American Journal of Human Genetics. 74: 62-72. PMID 14681832 DOI: 10.1086/381131  1
2004 Zöllner S, Pritchard JK. A coalescent-based approach for complex disease mapping Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2983: 124-130.  1
2004 Pritchard J, Zöllner S. Use of a local approximation to the ancestral recombination graph for fine mapping disease genes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2983: 141.  1
2003 Horton R, Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Read all about it: The Lancet's Paper of the Year, 2003. Lancet. 362: 2101-3. PMID 14697815  1
2003 Rosenberg NA, Li LM, Ward R, Pritchard JK. Informativeness of genetic markers for inference of ancestry. American Journal of Human Genetics. 73: 1402-22. PMID 14631557 DOI: 10.1086/380416  1
2003 Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics. 164: 1567-87. PMID 12930761  1
2003 Wall JD, Pritchard JK. Assessing the performance of the haplotype block model of linkage disequilibrium. American Journal of Human Genetics. 73: 502-15. PMID 12916017 DOI: 10.1086/378099  1
2003 Wall JD, Pritchard JK. Haplotype blocks and linkage disequilibrium in the human genome. Nature Reviews. Genetics. 4: 587-97. PMID 12897771 DOI: 10.1038/nrg1123  1
2003 Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, Blaser MJ, Graham DY, Vacher S, Perez-Perez GI, Yamaoka Y, Mégraud F, Otto K, Reichard U, Katzowitsch E, et al. Traces of human migrations in Helicobacter pylori populations. Science (New York, N.Y.). 299: 1582-5. PMID 12624269 DOI: 10.1126/science.1080857  1
2002 Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Genetic structure of human populations. Science (New York, N.Y.). 298: 2381-5. PMID 12493913 DOI: 10.1126/science.1078311  1
2002 Pritchard JK, Cox NJ. The allelic architecture of human disease genes: common disease-common variant...or not? Human Molecular Genetics. 11: 2417-23. PMID 12351577  1
2001 Pritchard JK, Donnelly P. Case-control studies of association in structured or admixed populations. Theoretical Population Biology. 60: 227-37. PMID 11855957 DOI: 10.1006/tpbi.2001.1543  1
2001 Pritchard JK. Deconstructing maize population structure. Nature Genetics. 28: 203-4. PMID 11431683 DOI: 10.1038/90026  1
2001 Pritchard JK, Przeworski M. Linkage disequilibrium in humans: models and data. American Journal of Human Genetics. 69: 1-14. PMID 11410837 DOI: 10.1086/321275  1
2001 Pritchard JK. Are rare variants responsible for susceptibility to complex diseases? American Journal of Human Genetics. 69: 124-37. PMID 11404818 DOI: 10.1086/321272  1
2001 Beaumont M, Barratt EM, Gottelli D, Kitchener AC, Daniels MJ, Pritchard JK, Bruford MW. Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology. 10: 319-36. PMID 11298948 DOI: 10.1046/j.1365-294X.2001.01196.x  1
2001 Rosenberg NA, Woolf E, Pritchard JK, Schaap T, Gefel D, Shpirer I, Lavi U, Bonne-Tamir B, Hillel J, Feldman MW. Distinctive genetic signatures in the Libyan Jews. Proceedings of the National Academy of Sciences of the United States of America. 98: 858-63. PMID 11158561 DOI: 10.1073/pnas.98.3.858  1
2000 Thomson R, Pritchard JK, Shen P, Oefner PJ, Feldman MW. Recent common ancestry of human Y chromosomes: evidence from DNA sequence data. Proceedings of the National Academy of Sciences of the United States of America. 97: 7360-5. PMID 10861004 DOI: 10.1073/pnas.97.13.7360  1
2000 Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 155: 945-59. PMID 10835412  1
2000 Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Association mapping in structured populations. American Journal of Human Genetics. 67: 170-81. PMID 10827107 DOI: 10.1086/302959  1
1999 Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Molecular Biology and Evolution. 16: 1791-8. PMID 10605120  1
1999 Pritchard JK, Rosenberg NA. Use of unlinked genetic markers to detect population stratification in association studies. American Journal of Human Genetics. 65: 220-8. PMID 10364535 DOI: 10.1086/302449  1
1999 Robson AJ, Bergstrom CT, Pritchard JK. Risky business: sexual and asexual reproduction in variable environments. Journal of Theoretical Biology. 197: 541-56. PMID 10196096 DOI: 10.1006/jtbi.1998.0894  1
1997 Pritchard JK, Schaeffer SW. Polymorphism and divergence at a Drosophila pseudogene locus. Genetics. 147: 199-208. PMID 9286680  1
1996 Pritchard JK, Feldman MW. Genetic data and the african origin of humans. Science (New York, N.Y.). 274: 1548a. PMID 17816997 DOI: 10.1126/science.274.5292.1548a  1
1996 Pritchard JK, Feldman MW. Statistics for microsatellite variation based on coalescence. Theoretical Population Biology. 50: 325-44. PMID 9000493 DOI: 10.1006/tpbi.1996.0034  1
1996 Pritchard JK, Feldman MW. Genetic data and the African origin of humans. Science (New York, N.Y.). 274: 1548-9. PMID 8966621 DOI: 10.1126/science.274.5292.1548  1
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