Pavel Tomancak - Publications

Affiliations: 
MPI-CBG, Dresden, Sachsen, Germany 
Area:
gene expression regulation, embryogenesis

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Giri R, Papadopoulos DK, Posadas DM, Potluri HK, Tomancak P, Mani M, Carthew RW. Ordered patterning of the sensory system is susceptible to stochastic features of gene expression. Elife. 9. PMID 32101167 DOI: 10.7554/Elife.53638  0.783
2020 Valuchova S, Mikulkova P, Pecinkova J, Klimova J, Krumnikl M, Bainar P, Heckmann S, Tomancak P, Riha K. Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy. Elife. 9. PMID 32041682 DOI: 10.7554/Elife.52546  0.309
2020 Giri R, Papadopoulos DK, Posadas DM, Potluri HK, Tomancak P, Mani M, Carthew RW. Author response: Ordered patterning of the sensory system is susceptible to stochastic features of gene expression Elife. DOI: 10.7554/Elife.53638.Sa2  0.721
2019 Skouloudaki K, Christodoulou I, Khalili D, Tsarouhas V, Samakovlis C, Tomancak P, Knust E, Papadopoulos DK. Yorkie controls tube length and apical barrier integrity during airway development. The Journal of Cell Biology. PMID 31315941 DOI: 10.1083/Jcb.201809121  0.729
2019 Viktorinová I, Haase R, Pietzsch T, Henry I, Tomancak P. Analysis of Actomyosin Dynamics at Local Cellular and Tissue Scales Using Time-lapse Movies of Cultured Drosophila Egg Chambers. Journal of Visualized Experiments : Jove. PMID 31205315 DOI: 10.3791/58587  0.338
2019 Papadopoulos DK, Tomancak P. Gene Regulation: Analog to Digital Conversion of Transcription Factor Gradients. Current Biology : Cb. 29: R422-R424. PMID 31163148 DOI: 10.1016/J.Cub.2019.04.052  0.725
2019 Skouloudaki K, Papadopoulos DK, Tomancak P, Knust E. The apical protein Apnoia interacts with Crumbs to regulate tracheal growth and inflation. Plos Genetics. 15: e1007852. PMID 30645584 DOI: 10.1371/Journal.Pgen.1007852  0.734
2019 Papadopoulos DK, Skouloudaki K, Engström Y, Terenius L, Rigler R, Zechner C, Vukojević V, Tomancak P. Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch. Development (Cambridge, England). PMID 30642837 DOI: 10.1242/Dev.168179  0.712
2018 Ovečka M, von Wangenheim D, Tomančák P, Šamajová O, Komis G, Šamaj J. Multiscale imaging of plant development by light-sheet fluorescence microscopy. Nature Plants. 4: 639-650. PMID 30185982 DOI: 10.1038/s41477-018-0238-2  0.321
2018 Maharana S, Wang J, Papadopoulos DK, Richter D, Pozniakovsky A, Poser I, Bickle M, Rizk S, Guillén-Boixet J, Franzmann T, Jahnel M, Marrone L, Chang YT, Sterneckert J, Tomancak P, et al. RNA buffers the phase separation behavior of prion-like RNA binding proteins. Science (New York, N.Y.). PMID 29650702 DOI: 10.1126/Science.Aar7366  0.696
2018 Wolff C, Tinevez JY, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P, Pavlopoulos A. Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb. Elife. 7. PMID 29595475 DOI: 10.7554/Elife.34410  0.351
2018 Wolff C, Tinevez J, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P, Pavlopoulos A. Author response: Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb Elife. DOI: 10.7554/Elife.34410.031  0.304
2017 Reynolds JJ, Bicknell LS, Carroll P, Higgs MR, Shaheen R, Murray JE, Papadopoulos DK, Leitch A, Murina O, Tarnauskaitė Ž, Wessel SR, Zlatanou A, Vernet A, von Kriegsheim A, Mottram RM, ... ... Tomancak P, et al. Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism. Nature Genetics. PMID 28191891 DOI: 10.1038/Ng.3790  0.709
2016 Jambor H, Mejstrik P, Tomancak P. Rapid Ovary Mass-Isolation (ROMi) to Obtain Large Quantities of Drosophila Egg Chambers for Fluorescent In Situ Hybridization. Methods in Molecular Biology (Clifton, N.J.). 1478: 253-262. PMID 27730587 DOI: 10.1007/978-1-4939-6371-3_15  0.751
2016 Schmied C, Tomancak P. Sample Preparation and Mounting of Drosophila Embryos for Multiview Light Sheet Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1478: 189-202. PMID 27730582 DOI: 10.1007/978-1-4939-6371-3_10  0.336
2016 Icha J, Schmied C, Sidhaye J, Tomancak P, Preibisch S, Norden C. Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development. Journal of Visualized Experiments : Jove. PMID 27167079 DOI: 10.3791/53966  0.312
2016 Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VV, Krishnan RT, Krishnamoorthy A, Ferreira IR, Ejsmont RK, Finkl K, Hasse S, ... ... Tomancak P, et al. A genome-wide resource for the analysis of protein localisation in Drosophila. Elife. 5. PMID 26896675 DOI: 10.7554/Elife.12068  0.762
2016 Börner K, Jain D, Vazquez-Pianzola P, Vengadasalam S, Steffen N, Fyodorov DV, Tomancak P, Konev A, Suter B, Becker PB. A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis. Developmental Biology. PMID 26851213 DOI: 10.1016/J.Ydbio.2016.01.039  0.365
2016 Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VV, Krishnan R, Krishnamoorthy A, Ferreira IR, Ejsmont RK, Finkl K, Hasse S, ... ... Tomancak P, et al. Author response: A genome-wide resource for the analysis of protein localisation in Drosophila Elife. DOI: 10.7554/Elife.12068.039  0.746
2015 Papadopoulos DK, Krmpot AJ, Nikolić SN, Krautz R, Terenius L, Tomancak P, Rigler R, Gehring WJ, Vukojević V. Probing the kinetic landscape of Hox transcription factor-DNA binding in live cells by massively parallel Fluorescence Correlation Spectroscopy. Mechanisms of Development. PMID 26428533 DOI: 10.1016/J.Mod.2015.09.004  0.749
2015 Dunst S, Kazimiers T, von Zadow F, Jambor H, Sagner A, Brankatschk B, Mahmoud A, Spannl S, Tomancak P, Eaton S, Brankatschk M. Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. Developmental Cell. 33: 351-65. PMID 25942626 DOI: 10.1016/J.Devcel.2015.03.022  0.77
2015 Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. Elife. 4. PMID 25838129 DOI: 10.7554/Elife.05003  0.764
2015 Heyn P, Kalinka AT, Tomancak P, Neugebauer KM. Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 148-54. PMID 25400101 DOI: 10.1002/bies.201400138  0.396
2014 Jug F, Pietzsch T, Preibisch S, Tomancak P. Bioimage Informatics in the context of Drosophila research. Methods (San Diego, Calif.). 68: 60-73. PMID 24732429 DOI: 10.1016/j.ymeth.2014.04.004  0.308
2014 Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM. The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Reports. 6: 285-92. PMID 24440719 DOI: 10.1016/J.Celrep.2013.12.030  0.426
2014 Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P. Author response: Systematic imaging reveals features and changing localization of mRNAs in Drosophila development Elife. DOI: 10.7554/Elife.05003.028  0.751
2012 Kalinka AT, Tomancak P. The evolution of early animal embryos: conservation or divergence? Trends in Ecology & Evolution. 27: 385-93. PMID 22520868 DOI: 10.1016/j.tree.2012.03.007  0.307
2012 Kelava I, Reillo I, Murayama AY, Kalinka AT, Stenzel D, Tomancak P, Matsuzaki F, Lebrand C, Sasaki E, Schwamborn JC, Okano H, Huttner WB, Borrell V. Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus. Cerebral Cortex (New York, N.Y. : 1991). 22: 469-81. PMID 22114084 DOI: 10.1093/Cercor/Bhr301  0.309
2011 Ejsmont RK, Ahlfeld P, Pozniakovsky A, Stewart AF, Tomancak P, Sarov M. Recombination-mediated genetic engineering of large genomic DNA transgenes. Methods in Molecular Biology (Clifton, N.J.). 772: 445-58. PMID 22065454 DOI: 10.1007/978-1-61779-228-1_26  0.777
2011 Ejsmont RK, Bogdanzaliewa M, Lipinski KA, Tomancak P. Production of fosmid genomic libraries optimized for liquid culture recombineering and cross-species transgenesis. Methods in Molecular Biology (Clifton, N.J.). 772: 423-43. PMID 22065453 DOI: 10.1007/978-1-61779-228-1_25  0.785
2010 Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P. Gene expression divergence recapitulates the developmental hourglass model. Nature. 468: 811-4. PMID 21150996 DOI: 10.1038/Nature09634  0.627
2010 Arunachalam M, Jayasurya K, Tomancak P, Ohler U. An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes. Bioinformatics (Oxford, England). 26: 2109-15. PMID 20624780 DOI: 10.1093/Bioinformatics/Btq358  0.623
2010 Tomancak P, Ohler U. Mapping the complexity of transcription control in higher eukaryotes. Genome Biology. 11: 115. PMID 20441601 DOI: 10.1186/Gb-2010-11-4-115  0.612
2010 Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK. Visualization of image data from cells to organisms. Nature Methods. 7: S26-41. PMID 20195255 DOI: 10.1038/Nmeth.1431  0.317
2010 Langer CC, Ejsmont RK, Schönbauer C, Schnorrer F, Tomancak P. In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura. Plos One. 5: e8928. PMID 20126626 DOI: 10.1371/journal.pone.0008928  0.781
2009 Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U. Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome. Genome Biology. 10: R73. PMID 19589141 DOI: 10.1186/Gb-2009-10-7-R73  0.644
2009 Ejsmont RK, Sarov M, Winkler S, Lipinski KA, Tomancak P. A toolkit for high-throughput, cross-species gene engineering in Drosophila. Nature Methods. 6: 435-7. PMID 19465918 DOI: 10.1038/nmeth.1334  0.787
2009 Preibisch S, Saalfeld S, Rohlfing T, Tomancak P. Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.812612  0.306
2008 Quijano C, Tomancak P, Lopez-Marti J, Suyama M, Bork P, Milan M, Torrents D, Manzanares M. Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. Genome Biology. 9: R176. PMID 19087263 DOI: 10.1186/Gb-2008-9-12-R176  0.419
2008 Lécuyer E, Tomancak P. Mapping the gene expression universe. Current Opinion in Genetics & Development. 18: 506-12. PMID 18809490 DOI: 10.1016/J.Gde.2008.08.003  0.429
2008 Preibisch S, Ejsmont R, Rohlfing T, Tomancak P. Towards digital representation of Drosophila embryogenesis 2008 5th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Proceedings, Isbi. 324-327. DOI: 10.1109/ISBI.2008.4540998  0.718
2008 Lecuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Tomancak P, Krause H. Global analysis of mRNA localization reveals a prominent role in the organization of cellular architecture and function Developmental Biology. 319: 464-465. DOI: 10.1016/J.Ydbio.2008.05.012  0.312
2007 Lécuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes TR, Tomancak P, Krause HM. Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell. 131: 174-87. PMID 17923096 DOI: 10.1016/J.Cell.2007.08.003  0.367
2007 Magalhães TR, Palmer J, Tomancak P, Pollard KS. Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach. Bmc Neuroscience. 8: 59. PMID 17672901 DOI: 10.1186/1471-2202-8-59  0.339
2007 Tomancak P, Berman BP, Beaton A, Weiszmann R, Kwan E, Hartenstein V, Celniker SE, Rubin GM. Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biology. 8: R145. PMID 17645804 DOI: 10.1186/Gb-2007-8-7-R145  0.784
2005 Aboobaker AA, Tomancak P, Patel N, Rubin GM, Lai EC. Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proceedings of the National Academy of Sciences of the United States of America. 102: 18017-22. PMID 16330759 DOI: 10.1073/Pnas.0508823102  0.572
2003 Lai EC, Tomancak P, Williams RW, Rubin GM. Computational identification of Drosophila microRNA genes. Genome Biology. 4: R42. PMID 12844358 DOI: 10.1186/gb-2003-4-7-r42  0.591
2002 Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis SE, Richards S, Ashburner M, Hartenstein V, Celniker SE, Rubin GM. Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biology. 3: RESEARCH0088. PMID 12537577 DOI: 10.1186/Gb-2002-3-12-Research0088  0.591
2002 Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 757-62. PMID 11805330 DOI: 10.1073/Pnas.231608898  0.784
2000 Tomancak P, Piano F, Riechmann V, Gunsalus KC, Kemphues KJ, Ephrussi A. A Drosophila melanogaster homologue of Caenorhabditis elegans par-1 acts at an early step in embryonic-axis formation. Nature Cell Biology. 2: 458-60. PMID 10878812 DOI: 10.1038/35017101  0.716
1998 Muckenthaler M, Gunkel N, Frishman D, Cyrklaff A, Tomancak P, Hentze MW. Iron-regulatory protein-1 (IRP-1) is highly conserved in two invertebrate species--characterization of IRP-1 homologues in Drosophila melanogaster and Caenorhabditis elegans. European Journal of Biochemistry / Febs. 254: 230-7. PMID 9660175 DOI: 10.1046/J.1432-1327.1998.2540230.X  0.359
1998 Tomancak P, Guichet A, Zavorszky P, Ephrussi A. Oocyte polarity depends on regulation of gurken by Vasa. Development (Cambridge, England). 125: 1723-32. PMID 9521910  0.712
Show low-probability matches.