Kevin P. White - Publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Genomics
Website:
http://www.genes.uchicago.edu/white.html

161 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Shi K, Zhang B, Kong BY, Zhang Y, Igartua C, Mohan LS, Quan VL, Panah E, Isales MC, Beaubier N, Taxter TJ, White KP, Zou L, Gerami P. Distinct Genomic Features in a Retrospective Cohort of Mucosal, Acral and Vulvovaginal Melanomas. Journal of the American Academy of Dermatology. PMID 31306728 DOI: 10.1016/j.jaad.2019.07.017  0.36
2019 Gu T, Fu AQ, Bolt MJ, White KP. Clinical Relevance of Noncoding Adenosine-to-Inosine RNA Editing in Multiple Human Cancers. Jco Clinical Cancer Informatics. 1-8. PMID 31162949 DOI: 10.1200/CCI.18.00151  0.56
2019 Pitt JJ, Riester M, Zheng Y, Yoshimatsu TF, Sanni A, Oluwasola O, Veloso A, Labrot E, Wang S, Odetunde A, Ademola A, Okedere B, Mahan S, Leary R, Macomber M, ... ... White KP, et al. Author Correction: Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features. Nature Communications. 10: 288. PMID 30643118 DOI: 10.1038/s41467-018-07886-4  0.6
2018 Meng Q, Wang K, Brunetti T, Xia Y, Jiao C, Dai R, Fitzgerald D, Thomas A, Jay L, Eckart H, Grennan K, Imamura-Kawasawa Y, Li M, Sestan N, White KP, et al. The long noncoding RNA may regulate expression of several schizophrenia-related genes. Science Translational Medicine. PMID 30545965 DOI: 10.1126/scitranslmed.aat6912  0.72
2018 Chen C, Meng Q, Xia Y, Ding C, Wang L, Dai R, Cheng L, Gunaratne P, Gibbs RA, Min S, Coarfa C, Reid JG, Zhang C, Jiao C, Jiang Y, ... ... White KP, et al. The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders. Science Translational Medicine. PMID 30545964 DOI: 10.1126/scitranslmed.aat8178  0.72
2018 Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, ... ... White KP, et al. Comprehensive functional genomic resource and integrative model for the human brain. Science (New York, N.Y.). 362. PMID 30545857 DOI: 10.1126/science.aat8464  0.72
2018 Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, ... ... White KP, et al. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution. PMID 30510174 DOI: 10.1038/s41559-018-0733-x  0.48
2018 Pitroda SP, Khodarev NN, Huang L, Uppal A, Wightman SC, Ganai S, Joseph N, Pitt J, Brown M, Forde M, Mangold K, Xue L, Weber C, Segal JP, Kadri S, ... ... White KP, et al. Author Correction: Integrated molecular subtyping defines a curable oligometastatic state in colorectal liver metastasis. Nature Communications. 9: 4827. PMID 30425251 DOI: 10.1038/s41467-018-07303-w  0.32
2018 Pitt JJ, Riester M, Zheng Y, Yoshimatsu TF, Sanni A, Oluwasola O, Veloso A, Labrot E, Wang S, Odetunde A, Ademola A, Okedere B, Mahan S, Leary R, Macomber M, ... ... White KP, et al. Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features. Nature Communications. 9: 4181. PMID 30327465 DOI: 10.1038/s41467-018-06616-0  0.6
2018 Romero-Calvo I, Weber C, Ray M, Brown M, Kirby K, Nandi RK, Long TM, Sparrow SM, Ugolkov A, Qiang W, Zhang Y, Brunetti T, Kindler H, Segal JP, Rzhetsky A, ... ... White KP, et al. Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors. Molecular Cancer Research : McR. PMID 30171177 DOI: 10.1158/1541-7786.MCR-18-0531  0.72
2018 Liu M, White KP, Funk T. Red-brown plaque on the leg. Cutis. 101: 400;405;406. PMID 30063779  0.4
2018 Beaubier N, Tell R, Huether R, Bontrager M, Bush S, Parsons J, Shah K, Baker T, Selkov G, Taxter T, Thomas A, Bettis S, Khan A, Lau D, Lee C, ... ... White KP, et al. Clinical validation of the Tempus xO assay. Oncotarget. 9: 25826-25832. PMID 29899824 DOI: 10.18632/oncotarget.25381  0.4
2018 Pitroda SP, Khodarev NN, Huang L, Uppal A, Wightman SC, Ganai S, Joseph N, Pitt J, Brown M, Forde M, Mangold K, Xue L, Weber C, Segal JP, Kadri S, ... ... White KP, et al. Integrated molecular subtyping defines a curable oligometastatic state in colorectal liver metastasis. Nature Communications. 9: 1793. PMID 29728604 DOI: 10.1038/s41467-018-04278-6  0.32
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... White KP, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/genetics.117.300657  0.68
2017 Dhiman VK, Bolt MJ, White KP. Nuclear receptors in cancer - uncovering new and evolving roles through genomic analysis. Nature Reviews. Genetics. PMID 29279606 DOI: 10.1038/nrg.2017.102  0.72
2017 Liu Y, Yu S, Dhiman VK, Brunetti T, Eckart H, White KP. Functional assessment of human enhancer activities using whole-genome STARR-sequencing. Genome Biology. 18: 219. PMID 29151363 DOI: 10.1186/s13059-017-1345-5  0.72
2017 Liu S, Liu Y, Zhang Q, Wu J, Liang J, Yu S, Wei GH, White KP, Wang X. Systematic identification of regulatory variants associated with cancer risk. Genome Biology. 18: 194. PMID 29061142 DOI: 10.1186/s13059-017-1322-z  1
2017 Stricker TP, Brown CD, Bandlamudi C, McNerney M, Kittler R, Montoya V, Peterson A, Grossman R, White KP. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. Plos Genetics. 13: e1006589. PMID 28263985 DOI: 10.1371/journal.pgen.1006589  0.52
2017 Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, Rodriguez AD, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. PMID 28077877 DOI: 10.1038/nature20794  0.64
2017 Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White K. Evolution of transcript modification by N6-methyladenosine in primates. Genome Research. PMID 28052920 DOI: 10.1101/gr.212563.116  0.68
2016 Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja J, Seiwert T, White K, McNerney ME, Fitzpatrick C, Wang YL, et al. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. The Journal of Molecular Diagnostics : Jmd. PMID 27836695 DOI: 10.1016/j.jmoldx.2016.07.012  0.56
2016 Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, ... ... White KP, et al. Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation. Molecular Cell. 62: 194-206. PMID 27105115 DOI: 10.1016/j.molcel.2016.03.036  0.64
2015 Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... White KP, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/nn.4156  1
2015 Jha AR, Zhou D, Brown CD, Kreitman M, Haddad GG, White KP. Shared genetic signals of hypoxia adaptation in Drosophila and in high-altitude human populations. Molecular Biology and Evolution. PMID 26576852 DOI: 10.1093/molbev/msv248  0.64
2015 Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation. Nature Neuroscience. 18: 1437-45. PMID 26322925 DOI: 10.1038/nn.4099  0.64
2015 Flourakis M, Kula-Eversole E, Hutchison AL, Han TH, Aranda K, Moose DL, White KP, Dinner AR, Lear BC, Ren D, Diekman CO, Raman IM, Allada R. A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability. Cell. 162: 836-48. PMID 26276633 DOI: 10.1016/j.cell.2015.07.036  0.48
2015 Roy S, Saha TT, Johnson L, Zhao B, Ha J, White KP, Girke T, Zou Z, Raikhel AS. Regulation of Gene Expression Patterns in Mosquito Reproduction. Plos Genetics. 11: e1005450. PMID 26274815 DOI: 10.1371/journal.pgen.1005450  1
2015 Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M. Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26044351 DOI: 10.1093/molbev/msv136  1
2015 Keck MK, Zuo Z, Khattri A, Stricker TP, Brown CD, Imanguli M, Rieke D, Endhardt K, Fang P, Brägelmann J, DeBoer R, El-Dinali M, Aktolga S, Lei Z, Tan P, ... ... White KP, et al. Integrative analysis of head and neck cancer identifies two biologically distinct HPV and three non-HPV subtypes. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 870-81. PMID 25492084 DOI: 10.1158/1078-0432.CCR-14-2481  0.48
2015 Khattri A, Zuo Z, Brägelmann J, Keck MK, El Dinali M, Brown CD, Stricker T, Munagala A, Cohen EE, Lingen MW, White KP, Vokes EE, Seiwert TY. Rare occurrence of EGFRvIII deletion in head and neck squamous cell carcinoma. Oral Oncology. 51: 53-8. PMID 25255959 DOI: 10.1016/j.oraloncology.2014.08.014  0.48
2015 Seiwert TY, Zuo Z, Keck MK, Khattri A, Pedamallu CS, Stricker T, Brown C, Pugh TJ, Stojanov P, Cho J, Lawrence MS, Getz G, Brägelmann J, DeBoer R, Weichselbaum RR, ... ... White KP, et al. Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 632-41. PMID 25056374 DOI: 10.1158/1078-0432.CCR-13-3310  0.36
2015 Voce DJ, Schmitt AM, Uppal A, McNerney ME, Bernal GM, Cahill KE, Wahlstrom JS, Nassiri A, Yu X, Crawley CD, White KP, Onel K, Weichselbaum RR, Yamini B. Nfkb1 is a haploinsufficient DNA damage-specific tumor suppressor. Oncogene. 34: 2807-13. PMID 25043302 DOI: 10.1038/onc.2014.211  1
2015 Ferrara AM, Pappa T, Fu J, Brown CD, Peterson A, Moeller LC, Wyne K, White KP, Pluzhnikov A, Trubetskoy V, Nobrega M, Weiss RE, Dumitrescu AM, Refetoff S. A novel mechanism of inherited TBG deficiency: Mutation in a liverspecific enhancer Journal of Clinical Endocrinology and Metabolism. 100: E173-E181. DOI: 10.1210/jc.20143490  0.48
2015 Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation Nature Neuroscience. DOI: 10.1038/nn.4099  0.64
2014 Wang X, Fu AQ, McNerney ME, White KP. Widespread genetic epistasis among cancer genes. Nature Communications. 5: 4828. PMID 25407795 DOI: 10.1038/ncomms5828  1
2014 Chanut-Delalande H, Hashimoto Y, Pelissier-Monier A, Spokony R, Dib A, Kondo T, Bohère J, Niimi K, Latapie Y, Inagaki S, Dubois L, Valenti P, Polesello C, Kobayashi S, Moussian B, ... White KP, et al. Pri peptides are mediators of ecdysone for the temporal control of development. Nature Cell Biology. 16: 1035-44. PMID 25344753 DOI: 10.1038/ncb3052  1
2014 Ozdemir A, Ma L, White KP, Stathopoulos A. Su(H)-mediated repression positions gene boundaries along the dorsal-ventral axis of Drosophila embryos. Developmental Cell. 31: 100-13. PMID 25313963 DOI: 10.1016/j.devcel.2014.08.005  0.48
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/pnas.1410434111  1
2014 Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S. Transcription factor networks in Drosophila melanogaster. Cell Reports. 8: 2031-43. PMID 25242320 DOI: 10.1016/j.celrep.2014.08.038  1
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... White KP, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  1
2014 Hause RJ, Stark AL, Antao NN, Gorsic LK, Chung SH, Brown CD, Wong SS, Gill DF, Myers JL, To LA, White KP, Dolan ME, Jones RB. Identification and validation of genetic variants that influence transcription factor and cell signaling protein levels. American Journal of Human Genetics. 95: 194-208. PMID 25087611 DOI: 10.1016/j.ajhg.2014.07.005  1
2014 Oh H, Slattery M, Ma L, White KP, Mann RS, Irvine KD. Yorkie promotes transcription by recruiting a histone methyltransferase complex. Cell Reports. 8: 449-59. PMID 25017066 DOI: 10.1016/j.celrep.2014.06.017  1
2014 Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, ... ... White KP, et al. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome Research. 24: 1224-35. PMID 24985916 DOI: 10.1101/gr.168807.113  1
2014 Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research. 24: 1115-24. PMID 24985914 DOI: 10.1101/gr.162008.113  1
2014 McNerney ME, Brown CD, Peterson AL, Banerjee M, Larson RA, Anastasi J, Le Beau MM, White KP. The spectrum of somatic mutations in high-risk acute myeloid leukaemia with -7/del(7q). British Journal of Haematology. 166: 550-6. PMID 24931631 DOI: 10.1111/bjh.12964  1
2014 VanderWeele DJ, Brown CD, Taxy JB, Gillard M, Hatcher DM, Tom WR, Stadler WM, White KP. Low-grade prostate cancer diverges early from high grade and metastatic disease. Cancer Science. 105: 1079-85. PMID 24890684 DOI: 10.1111/cas.12460  1
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/pnas.1318948111  1
2014 Stark AL, Hause RJ, Gorsic LK, Antao NN, Wong SS, Chung SH, Gill DF, Im HK, Myers JL, White KP, Jones RB, Dolan ME. Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy. Plos Genetics. 10: e1004192. PMID 24699359 DOI: 10.1371/journal.pgen.1004192  1
2014 Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, ... ... White KP, et al. SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer. Cancer Cell. 25: 455-68. PMID 24656772 DOI: 10.1016/j.ccr.2014.02.007  1
2014 Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL. Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. Journal of the American Medical Informatics Association : Jamia. 21: 969-75. PMID 24464852 DOI: 10.1136/amiajnl-2013-002155  1
2014 Chambers CJ, Liu H, White CR, White KP, Sharon VR. Eruptive purpuric papules on the arms; a case of chemotherapy-induced inflammation of actinic keratoses and review of the literature. Dermatology Online Journal. 20: 21246. PMID 24456949  0.32
2014 Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16. PMID 24408913 DOI: 10.1093/molbev/msu042  1
2014 Liu Y, Zhou J, White KP. RNA-seq differential expression studies: more sequence or more replication? Bioinformatics (Oxford, England). 30: 301-4. PMID 24319002 DOI: 10.1093/bioinformatics/btt688  1
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... White KP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/gr.143891.112  1
2014 Bee CR, Steele EA, White KP, Wilson DJ. Tattoo granuloma of the eyelid mimicking carcinoma. Ophthalmic Plastic and Reconstructive Surgery. 30: e15-7. PMID 23511999 DOI: 10.1097/IOP.0b013e31828ad7b7  0.32
2013 Møller EK, Kumar P, Voet T, Peterson A, Van Loo P, Mathiesen RR, Fjelldal R, Grundstad J, Borgen E, Baumbusch LO, Naume B, Børresen-Dale AL, White KP, Nord S, Kristensen VN. Next-generation sequencing of disseminated tumor cells. Frontiers in Oncology. 3: 320. PMID 24427740 DOI: 10.3389/fonc.2013.00320  1
2013 Sobanko JF, Vanderbeek GE, White KP, White CR, Bar AA. What is your diagnosis? Spiradenocarcinoma. Cutis. 92: 285-7. PMID 24416743  0.32
2013 Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJ, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. miR-9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor. Cell. 155: 1556-67. PMID 24360277 DOI: 10.1016/j.cell.2013.10.057  1
2013 Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, ... White KP, et al. A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. Cell. 155: 70-80. PMID 24074861 DOI: 10.1016/j.cell.2013.08.030  1
2013 Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS. Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. Plos Genetics. 9: e1003753. PMID 24039600 DOI: 10.1371/journal.pgen.1003753  1
2013 Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome Biology. 14: R86. PMID 23972280 DOI: 10.1186/gb-2013-14-8-r86  1
2013 Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S. Recombinant antibodies to histone post-translational modifications. Nature Methods. 10: 992-5. PMID 23955773 DOI: 10.1038/nmeth.2605  1
2013 Slattery M, White KP. Enhanced dissection of the regulatory genome. Nature Methods. 10: 710-2. PMID 23900252 DOI: 10.1038/nmeth.2577  1
2013 Zou Z, Saha TT, Roy S, Shin SW, Backman TW, Girke T, White KP, Raikhel AS. Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression. Proceedings of the National Academy of Sciences of the United States of America. 110: E2173-81. PMID 23633570 DOI: 10.1073/pnas.1305293110  1
2013 Bissonnette ML, Kocherginsky M, Tretiakova M, Jimenez RE, Barkan GA, Mehta V, Sirintrapun SJ, Steinberg GD, White KP, Stricker T, Paner GP. The different morphologies of urachal adenocarcinoma do not discriminate genomically by micro-RNA expression profiling. Human Pathology. 44: 1605-11. PMID 23528864 DOI: 10.1016/j.humpath.2013.01.008  1
2013 Brägelmann J, Dagogo-Jack I, El Dinali M, Stricker T, Brown CD, Zuo Z, Khattri A, Keck M, McNerney ME, Longnecker R, Bieging K, Kocherginsky M, Alexander K, Salgia R, Lingen MW, ... ... White KP, et al. Oral cavity tumors in younger patients show a poor prognosis and do not contain viral RNA. Oral Oncology. 49: 525-33. PMID 23490885 DOI: 10.1016/j.oraloncology.2013.02.003  1
2013 Oh H, Slattery M, Ma L, Crofts A, White KP, Mann RS, Irvine KD. Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes. Cell Reports. 3: 309-18. PMID 23395637 DOI: 10.1016/j.celrep.2013.01.008  1
2013 Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A comprehensive nuclear receptor network for breast cancer cells. Cell Reports. 3: 538-51. PMID 23375374 DOI: 10.1016/j.celrep.2013.01.004  1
2013 Jiang ZF, Xia F, Johnson KW, Brown CD, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Comparison of the genome sequences of "Candidatus Portiera aleyrodidarum" primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes. Applied and Environmental Microbiology. 79: 1757-9. PMID 23315735 DOI: 10.1128/AEM.02976-12  1
2013 McNerney ME, Brown CD, Wang X, Bartom ET, Karmakar S, Bandlamudi C, Yu S, Ko J, Sandall BP, Stricker T, Anastasi J, Grossman RL, Cunningham JM, Le Beau MM, White KP. CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia. Blood. 121: 975-83. PMID 23212519 DOI: 10.1182/blood-2012-04-426965  1
2013 Webber JL, Zhang J, Cote L, Vivekanand P, Ni X, Zhou J, Nègre N, Carthew RW, White KP, Rebay I. The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan. Genetics. 193: 633-49. PMID 23172856 DOI: 10.1534/genetics.112.146647  1
2013 Ryan KA, Pruksaritanon S, Reber AW, Aman PG, White KP, Smith MC, Hwang SN. Preference based scheduling for medical residents and interns at the University of Virginia 2013 Ieee Systems and Information Engineering Design Symposium, Sieds 2013. 110-115. DOI: 10.1109/SIEDS.2013.6549503  0.6
2013 Anstaett BB, Coulson AJ, Kerr DM, Park NM, Smith MC, White KP. Data integration in the Albemarle-Charlottesville Regional Jail: A systems engineering approach to support Evidence-based decision making 2013 Ieee Systems and Information Engineering Design Symposium, Sieds 2013. 82-85. DOI: 10.1109/SIEDS.2013.6549498  0.6
2012 Acharya P, Negre N, Johnston J, Wei Y, White KP, Henry RW, Arnosti DN. Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein. G3 (Bethesda, Md.). 2: 1459-72. PMID 23173097 DOI: 10.1534/g3.112.004424  0.48
2012 Jiang ZF, Xia F, Johnson KW, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Genome sequences of the primary endosymbiont "Candidatus Portiera aleyrodidarum" in the whitefly Bemisia tabaci B and Q biotypes. Journal of Bacteriology. 194: 6678-9. PMID 23144417 DOI: 10.1128/JB.01841-12  1
2012 Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. Plos Biology. 10: e1001420. PMID 23139640 DOI: 10.1371/journal.pbio.1001420  1
2012 Slattery M, Nègre N, White KP. Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster. Briefings in Functional Genomics. 11: 336-46. PMID 23023663 DOI: 10.1093/bfgp/els034  0.36
2012 Hekman KE, Yu GY, Brown CD, Zhu H, Du X, Gervin K, Undlien DE, Peterson A, Stevanin G, Clark HB, Pulst SM, Bird TD, White KP, Gomez CM. A conserved eEF2 coding variant in SCA26 leads to loss of translational fidelity and increased susceptibility to proteostatic insult. Human Molecular Genetics. 21: 5472-83. PMID 23001565 DOI: 10.1093/hmg/dds392  1
2012 Marin EC, Dry KE, Alaimo DR, Rudd KT, Cillo AR, Clenshaw ME, Negre N, White KP, Truman JW. Ultrabithorax confers spatial identity in a context-specific manner in the Drosophila postembryonic ventral nervous system. Neural Development. 7: 31. PMID 22967828 DOI: 10.1186/1749-8104-7-31  1
2012 Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... White KP, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/gr.136184.111  1
2012 Nagaraj R, Gururaja-Rao S, Jones KT, Slattery M, Negre N, Braas D, Christofk H, White KP, Mann R, Banerjee U. Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway. Genes & Development. 26: 2027-37. PMID 22925885 DOI: 10.1101/gad.183061.111  0.48
2012 Chen S, Spletter M, Ni X, White KP, Luo L, Long M. Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Reports. 1: 118-32. PMID 22832161 DOI: 10.1016/j.celrep.2011.12.010  0.84
2012 Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. The Embo Journal. 31: 2798-809. PMID 22543869 DOI: 10.1038/emboj.2012.108  1
2012 Jack AR, Snavely NR, White KP, Swanson NA. Lymphoepithelioma-like carcinoma in a patient with mycosis fungoides. Journal of Drugs in Dermatology : Jdd. 11: 663-4. PMID 22527441  0.32
2012 Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/nmeth.1985  1
2012 Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression. Plos Genetics. 8: e1002596. PMID 22479195 DOI: 10.1371/journal.pgen.1002596  1
2012 Jacobson-Dunlop E, Liu H, Simpson EL, White CR, White KP. Glomeruloid hemangiomas in the absence of POEMS syndrome. Journal of Cutaneous Pathology. 39: 402-3. PMID 22443390 DOI: 10.1111/j.1600-0560.2012.01898_2.x  0.32
2012 Jacobson-Dunlop E, Liu H, Simpson EL, White CR, White KP. Glomeruloid hemangiomas in the absence of POEMS syndrome. Journal of Cutaneous Pathology. 39: 401. PMID 22443389 DOI: 10.1111/j.1600-0560.2012.01898_1.x  0.32
2012 Doré LC, Chlon TM, Brown CD, White KP, Crispino JD. Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis. Blood. 119: 3724-33. PMID 22383799 DOI: 10.1182/blood-2011-09-380634  1
2012 Grossman RL, White KP. A vision for a biomedical cloud. Journal of Internal Medicine. 271: 122-30. PMID 22142244 DOI: 10.1111/j.1365-2796.2011.02491.x  1
2012 Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR. Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics (Oxford, England). 28: 206-13. PMID 22084256 DOI: 10.1093/bioinformatics/btr628  1
2012 Gao W, Brown C, Grossman RL, Ma L, Slattery M, White KP, Yu PS. Discovering geometric patterns in genomic data 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 147-154. DOI: 10.1145/2382936.2382955  1
2012 Hughes KK, Wu CY, Lamp JL, Coleman AG, Adili P, Dhanoya SK, White KP. Optimizing airport arrival operations: A systems engineering analysis of Washington Dulles International Airport 2012 Ieee Systems and Information Engineering Design Symposium, Sieds 2012. 145-149. DOI: 10.1109/SIEDS.2012.6215139  0.6
2012 Grossman RL, Greenway M, Heath AP, Powell R, Suarez RD, Wells W, White K, Atkinson M, Klampanos I, Alvarez HL, Harvey C, Mambretti JJ. The design of a community science cloud: The open science data cloud perspective Proceedings - 2012 Sc Companion: High Performance Computing, Networking Storage and Analysis, Scc 2012. 1051-1057. DOI: 10.1109/SC.Companion.2012.127  1
2011 Ludwig MZ, Manu, Kittler R, White KP, Kreitman M. Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. Plos Genetics. 7: e1002364. PMID 22102826 DOI: 10.1371/journal.pgen.1002364  1
2011 Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, Victorsen A, White KP, Kellis M. Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome Research. 21: 2096-113. PMID 21994247 DOI: 10.1101/gr.119974.110  1
2011 Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, Zhai W, Cai J, Ling S, Gong Q, Chong Z, Qu Z, Li Q, Liu J, Yang J, Zheng C, ... ... White KP, et al. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proceedings of the National Academy of Sciences of the United States of America. 108: 12042-7. PMID 21730188 DOI: 10.1073/pnas.1108715108  1
2011 North JP, Vetto JT, Murali R, White KP, White CR, Bastian BC. Assessment of copy number status of chromosomes 6 and 11 by FISH provides independent prognostic information in primary melanoma. The American Journal of Surgical Pathology. 35: 1146-50. PMID 21716079 DOI: 10.1097/PAS.0b013e318222a634  0.32
2011 Stoddart A, McNerney ME, Bartom E, Bergerson R, Young DJ, Qian Z, Wang J, Fernald AA, Davis EM, Larson RA, White KP, Le Beau MM. Genetic pathways leading to therapy-related myeloid neoplasms. Mediterranean Journal of Hematology and Infectious Diseases. 3: e2011019. PMID 21713073 DOI: 10.4084/MJHID.2011.019  1
2011 Wang Y, Wu W, Negre NN, White KP, Li C, Shah PK. Determinants of antigenicity and specificity in immune response for protein sequences. Bmc Bioinformatics. 12: 251. PMID 21693021 DOI: 10.1186/1471-2105-12-251  1
2011 Jacobson-Dunlop E, Takiguchi R, White CR, White KP. Fatal pancreatitis presenting as pancreatic panniculitis without enzyme elevation. Journal of Cutaneous Pathology. 38: 455-7. PMID 21521354 DOI: 10.1111/j.1600-0560.2011.01725_1.x  0.32
2011 Quan J, Saaem I, Tang N, Ma S, Negre N, Gong H, White KP, Tian J. Parallel on-chip gene synthesis and application to optimization of protein expression. Nature Biotechnology. 29: 449-52. PMID 21516083 DOI: 10.1038/nbt.1847  1
2011 Slattery M, Ma L, Négre N, White KP, Mann RS. Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila. Plos One. 6: e14686. PMID 21483663 DOI: 10.1371/journal.pone.0014686  1
2011 Wang X, White KP. Large-scale genetic epistasis networks using RNAi. Nature Methods. 8: 299-301. PMID 21451517 DOI: 10.1038/nmeth0411-299  1
2011 Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, ... ... White KP, et al. A cis-regulatory map of the Drosophila genome. Nature. 471: 527-31. PMID 21430782 DOI: 10.1038/nature09990  1
2011 Godley LA, Cunningham J, Dolan ME, Huang RS, Gurbuxani S, McNerney ME, Larson RA, Leong H, Lussier Y, Onel K, Odenike O, Stock W, White KP, Le Beau MM. An integrated genomic approach to the assessment and treatment of acute myeloid leukemia. Seminars in Oncology. 38: 215-24. PMID 21421111 DOI: 10.1053/j.seminoncol.2011.01.003  1
2011 Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis. Bmc Genomics. 12: 134. PMID 21356108 DOI: 10.1186/1471-2164-12-134  1
2011 Al-Dhaheri M, Wu J, Skliris GP, Li J, Higashimato K, Wang Y, White KP, Lambert P, Zhu Y, Murphy L, Xu W. CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells. Cancer Research. 71: 2118-28. PMID 21282336 DOI: 10.1158/0008-5472.CAN-10-2426  1
2011 Tan BH, Barry CI, Wick MR, White KP, Brown JG, Lee A, Litchfield AH, Lener EV, Shitabata PK. Multicentric reticulohistiocytosis and urologic carcinomas: a possible paraneoplastic association. Journal of Cutaneous Pathology. 38: 43-8. PMID 20726933 DOI: 10.1111/j.1600-0560.2010.01608.x  0.32
2011 Kanner WA, White KP, Barry CI, Lee AJ, Cousar JB, Wick MR, Patterson JW. Cutaneous T-cell lymphoma occurring with a melanocytic proliferation, masquerading as a nonhealing ulcer with reactive changes. Journal of Cutaneous Pathology. 38: 67-72. PMID 20002651 DOI: 10.1111/j.1600-0560.2009.01485.x  0.32
2011 Fu AC, Galione RA, Keith AJ, Miller MG, Paxton CA, Vaccarello CM, Smith MC, White KP. Albemarle-Charlottesville Regional Jail overcrowding systems analysis 2011 Ieee Systems and Information Engineering Design Symposium, Sieds 2011 - Conference Proceedings. 192-197. DOI: 10.1109/SIEDS.2011.5876879  0.6
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... White KP, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/science.1198374  0.92
2010 Jacobson-Dunlop E, Takiguchi R, Ward T, Barnes P, Becker J, White CR, White KP. Sporotrichoid Staphylococcus aureus infection in an immunosuppressed patient. Archives of Dermatology. 146: 1435-7. PMID 21173335 DOI: 10.1001/archdermatol.2010.366  0.32
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/journal.pgen.1000814  1
2010 Takiguchi RH, White KP, White CR, Simpson EL. Verrucous porokeratosis of the gluteal cleft (porokeratosis ptychotropica): a rare disorder easily misdiagnosed. Journal of Cutaneous Pathology. 37: 802-7. PMID 19638069 DOI: 10.1111/j.1600-0560.2009.01387.x  0.32
2010 Grossman RL, Gu Y, Mambretti J, Sabala M, Szalay A, White K. An overview of the Open Science Data Cloud Hpdc 2010 - Proceedings of the 19th Acm International Symposium On High Performance Distributed Computing. 377-384. DOI: 10.1145/1851476.1851533  1
2009 Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA. Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Molecular Cell. 36: 39-50. PMID 19818708 DOI: 10.1016/j.molcel.2009.09.022  1
2009 Lillis JV, North J, Vetto JT, Corless CL, White KP, Lee KK. Primary scrotal melanoma presenting as a large, amelanotic, exophytic mass. Archives of Dermatology. 145: 1071-2. PMID 19770463 DOI: 10.1001/archdermatol.2009.223  0.32
2009 Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL. Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. Bioinformatics (Oxford, England). 25: 3001-4. PMID 19656951 DOI: 10.1093/bioinformatics/btp469  1
2009 Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell. 137: 1259-71. PMID 19563758 DOI: 10.1016/j.cell.2009.04.043  1
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927a  0.64
2009 Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, Bellen HJ, Hoskins RA. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nature Methods. 6: 431-4. PMID 19465919 DOI: 10.1038/nmeth.1331  1
2009 Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li TR, Boutros M, White KP. Genomic mapping of binding regions for the Ecdysone receptor protein complex. Genome Research. 19: 1006-13. PMID 19237466 DOI: 10.1101/gr.081349.108  1
2009 Liu J, Ghanim M, Xue L, Brown CD, Iossifov I, Angeletti C, Hua S, Nègre N, Ludwig M, Stricker T, Al-Ahmadie HA, Tretiakova M, Camp RL, Perera-Alberto M, Rimm DL, ... ... White KP, et al. Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer. Science (New York, N.Y.). 323: 1218-22. PMID 19164706 DOI: 10.1126/science.1157669  1
2009 Neretti N, Wang PY, Brodsky AS, Nyguyen HH, White KP, Rogina B, Helfand SL. Long-lived Indy induces reduced mitochondrial reactive oxygen species production and oxidative damage. Proceedings of the National Academy of Sciences of the United States of America. 106: 2277-82. PMID 19164521 DOI: 10.1073/pnas.0812484106  1
2009 Smith MC, Kim KT, McGovern MC, San Antonio MT, Harter CJ, White KP. Energy analysis of the John Paul Jones Arena 2009 Ieee Systems and Information Engineering Design Symposium, Sieds '09. 49-54. DOI: 10.1109/SIEDS.2009.5166151  0.6
2008 Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. Plos Genetics. 4: e1000221. PMID 18927626 DOI: 10.1371/journal.pgen.1000221  1
2008 Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Molecular Biology and Evolution. 25: 2269-77. PMID 18755761 DOI: 10.1093/molbev/msn189  0.56
2008 White KP, Barry CI, Patterson JW. Focus-floating microscopy for detecting borrelia species in tissue sections: back to basics. Archives of Dermatology. 144: 662-3. PMID 18490595 DOI: 10.1001/archderm.144.5.662  0.32
2008 Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Molecular Systems Biology. 4: 188. PMID 18414489 DOI: 10.1038/msb.2008.25  1
2008 Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... White KP, et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nature Methods. 5: 409-15. PMID 18391959 DOI: 10.1038/nmeth.1199  1
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/j.gene.2007.10.012  1
2008 White KP, Zedek DC, White WL, Simpson EL, Hester E, Morrison L, Lazarova Z, Liu D, Scagliarini A, Kurtz SE, White CR, Yancey KB, Blauvelt A. Orf-induced immunobullous disease: A distinct autoimmune blistering disorder. Journal of the American Academy of Dermatology. 58: 49-55. PMID 17919774 DOI: 10.1016/j.jaad.2007.08.029  0.32
2008 Hesaltine EK, McElroy EM, Pyle CE, Shebi MB, Skinner VR, Smith MC, White KP. Community criminal justice study: Simulation analysis of jail overcrowding Proceedings of the 2008 Ieee Systems and Information Engineering Design Symposium, Sieds 2008. 147-151. DOI: 10.1109/SIEDS.2008.4559701  0.6
2007 Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG. Experimental selection for Drosophila survival in extremely low O(2) environment. Plos One. 2: e490. PMID 17534440 DOI: 10.1371/journal.pone.0000490  1
2007 Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/msb4100112  0.56
2006 Ghanim M, White KP. Genotyping method to screen individual Drosophila embryos prior to RNA extraction. Biotechniques. 41: 414, 416, 418. PMID 17068956 DOI: 10.2144/000112267  0.48
2006 Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 103: 12027-32. PMID 16880385 DOI: 10.1073/pnas.0605003103  0.44
2006 Halasz G, van Batenburg MF, Perusse J, Hua S, Lu XJ, White KP, Bussemaker HJ. Detecting transcriptionally active regions using genomic tiling arrays. Genome Biology. 7: R59. PMID 16859498 DOI: 10.1186/gb-2006-7-7-r59  0.36
2006 Nègre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G. Chromosomal distribution of PcG proteins during Drosophila development. Plos Biology. 4: e170. PMID 16613483 DOI: 10.1371/journal.pbio.0040170  0.72
2006 Rzhetsky A, Iossifov I, Loh JM, White KP. Microparadigms: chains of collective reasoning in publications about molecular interactions. Proceedings of the National Academy of Sciences of the United States of America. 103: 4940-5. PMID 16543380 DOI: 10.1073/pnas.0600591103  0.36
2006 Gilad Y, Oshlack A, Smyth GK, Speed TP, White KP. Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature. 440: 242-5. PMID 16525476 DOI: 10.1038/nature04559  0.44
2006 Donohue S, Louis G, Scherer W, Smith MC, White KP, Beling P. An innovative model for the administration of undergraduate capstone projects Asee Annual Conference and Exposition, Conference Proceedings 0.6
2005 Rifkin SA, Houle D, Kim J, White KP. A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression. Nature. 438: 220-3. PMID 16281035 DOI: 10.1038/nature04114  1
2005 Meister S, Kanzok SM, Zheng XL, Luna C, Li TR, Hoa NT, Clayton JR, White KP, Kafatos FC, Christophides GK, Zheng L. Immune signaling pathways regulating bacterial and malaria parasite infection of the mosquito Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 11420-5. PMID 16076953 DOI: 10.1073/pnas.0504950102  0.64
2005 Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Research. 15: 674-80. PMID 15867429 DOI: 10.1101/gr.3335705  1
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... White KP, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/gr.3059305  0.72
2004 Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (New York, N.Y.). 306: 655-60. PMID 15499012 DOI: 10.1126/science.1101312  1
2004 Gu Z, Rifkin SA, White KP, Li WH. Duplicate genes increase gene expression diversity within and between species. Nature Genetics. 36: 577-9. PMID 15122255 DOI: 10.1038/ng1355  1
2004 Iossifov I, Krauthammer M, Friedman C, Hatzivassiloglou V, Bader JS, White KP, Rzhetsky A. Probabilistic inference of molecular networks from noisy data sources. Bioinformatics (Oxford, England). 20: 1205-13. PMID 14871876 DOI: 10.1093/bioinformatics/bth061  0.36
2004 Chen YP, Gaudiose M, Murphy R, Schrader L, Seirafi R, White KP, Wu PK. Advances in developing a signal processing tool for rocket motor measurements 2004 Ieee Systems and Information Engineering Design Symposium. 149-155.  0.4
2003 Zhou X, Wang X, Dougherty ER. Missing-value estimation using linear and non-linear regression with Bayesian gene selection. Bioinformatics (Oxford, England). 19: 2302-7. PMID 14630659  0.56
2003 Sun LV, Chen L, Greil F, Negre N, Li TR, Cavalli G, Zhao H, Van Steensel B, White KP. Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 100: 9428-33. PMID 12876199 DOI: 10.1073/pnas.1533393100  0.44
2003 Li TR, White KP. Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Developmental Cell. 5: 59-72. PMID 12852852 DOI: 10.1016/S1534-5807(03)00192-8  0.64
2003 Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ. Analysis of the eye developmental pathway in Drosophila using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 100: 4024-9. PMID 12655063 DOI: 10.1073/pnas.0630561100  0.48
2003 Rifkin SA, Kim J, White KP. Evolution of gene expression in the Drosophila melanogaster subgroup. Nature Genetics. 33: 138-44. PMID 12548287 DOI: 10.1038/ng1086  1
2003 Ivey J, Rubenstein T, Snyder A, Stewart M, Luebke E, White KP, Wu PK, Sparks J, Whitney D. Developing a signal processing tool for rocket motor measurements Proceedings of the 2003 Ieee Systems and Information Engineering Design Symposium, Sieds 2003. 89-94. DOI: 10.1109/SIEDS.2003.158009  0.4
2002 Reinke V, White KP. Developmental genomic approaches in model organisms. Annual Review of Genomics and Human Genetics. 3: 153-78. PMID 12142361 DOI: 10.1146/annurev.genom.3.031302.100922  0.44
2001 Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genetics. 29: 389-95. PMID 11726925 DOI: 10.1038/ng766  0.44
1999 White KP, Rifkin SA, Hurban P, Hogness DS. Microarray analysis of Drosophila development during metamorphosis. Science (New York, N.Y.). 286: 2179-84. PMID 10591654 DOI: 10.1126/science.286.5447.2179  0.68
1997 White KP, Hurban P, Watanabe T, Hogness DS. Coordination of Drosophila metamorphosis by two ecdysone-induced nuclear receptors. Science (New York, N.Y.). 276: 114-7. PMID 9082981 DOI: 10.1126/science.276.5309.114  0.48
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