Kevin P. White - Publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Genomics
Website:
http://www.genes.uchicago.edu/white.html

165 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... White KP, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3  0.392
2021 Krinsky BH, Arthur RK, Xia S, Sosa D, Arsala D, White KP, Long M. Rapid Cis-Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4-NOT Component in . Genes. 13. PMID 35052398 DOI: 10.3390/genes13010057  0.405
2021 Sheng T, Ho SWT, Ooi WF, Xu C, Xing M, Padmanabhan N, Huang KK, Ma L, Ray M, Guo YA, Sim NL, Anene-Nzelu CG, Chang MM, Razavi-Mohseni M, Beer MA, ... ... White KP, et al. Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer. Genome Medicine. 13: 158. PMID 34635154 DOI: 10.1186/s13073-021-00970-3  0.49
2020 Lee D, Shi M, Moran J, Wall M, Zhang J, Liu J, Fitzgerald D, Kyono Y, Ma L, White KP, Gerstein M. STARRPeaker: uniform processing and accurate identification of STARR-seq active regions. Genome Biology. 21: 298. PMID 33292397 DOI: 10.1186/s13059-020-02194-x  0.767
2020 Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... White KP, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4  0.553
2020 Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, ... ... White KP, et al. An integrative ENCODE resource for cancer genomics. Nature Communications. 11: 3696. PMID 32728046 DOI: 10.1038/S41467-020-14743-W  0.818
2020 Xing M, Ooi WF, Tan J, Qamra A, Lee PH, Li Z, Xu C, Padmanabhan N, Lim JQ, Guo YA, Yao X, Amit M, Ng LM, Sheng T, Wang J, ... ... White K, et al. Genomic and epigenomic EBF1 alterations modulate TERT expression in gastric cancer. The Journal of Clinical Investigation. PMID 32364535 DOI: 10.1172/Jci126726  0.611
2020 Zraly CB, Zakkar A, Perez JH, Ng J, White KP, Slattery M, Dingwall AK. The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development. Nucleic Acids Research. PMID 32052053 DOI: 10.1093/Nar/Gkaa082  0.375
2020 Quan VL, Zhang B, Zhang Y, Mohan LS, Shi K, Wagner A, Kruse L, Taxter T, Beaubier N, Beaubier, White K, Zou L, Gerami P. Integrating Next Generation Sequencing with Morphology Improves Prognostic and Biologic Classification of Spitz Neoplasms. The Journal of Investigative Dermatology. PMID 32004563 DOI: 10.1016/j.jid.2019.12.031  0.348
2020 Mohan LS, Khan AU, Zhang B, Quan VL, Shi K, Panah E, Isales MC, Yazdan P, Zhang Y, Beaubier N, Taxter TJ, Compres EV, Kim D, White KP, Gerami P. Retrospective Cohort: Genomic Differences Between Pigmented Spindle Cell Nevi of Reed and Reed-Like Melanomas. The American Journal of Dermatopathology. PMID 32000215 DOI: 10.1097/DAD.0000000000001603  0.313
2019 Beaubier N, Bontrager M, Huether R, Igartua C, Lau D, Tell R, Bobe AM, Bush S, Chang AL, Hoskinson DC, Khan AA, Kudalkar E, Leibowitz BD, Lozachmeur A, Michuda J, ... ... White KP, et al. Integrated genomic profiling expands clinical options for patients with cancer. Nature Biotechnology. PMID 31570899 DOI: 10.1038/S41587-019-0259-Z  0.319
2019 Ooi WF, Nargund AM, Lim KJ, Zhang S, Xing M, Mandoli A, Lim JQ, Ho SWT, Guo Y, Yao X, Lin SJ, Nandi T, Xu C, Ong X, Lee M, ... ... White KP, et al. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent and enhancer hijacking in primary gastric adenocarcinoma. Gut. PMID 31542774 DOI: 10.1136/gutjnl-2018-317612  0.381
2019 Shi K, Zhang B, Kong BY, Zhang Y, Igartua C, Mohan LS, Quan VL, Panah E, Isales MC, Beaubier N, Taxter TJ, White KP, Zou L, Gerami P. Distinct Genomic Features in a Retrospective Cohort of Mucosal, Acral and Vulvovaginal Melanomas. Journal of the American Academy of Dermatology. PMID 31306728 DOI: 10.1016/J.Jaad.2019.07.017  0.304
2019 Wang S, Pitt JJ, Zheng Y, Yoshimatsu TF, Gao G, Sanni A, Oluwasola O, Ajani M, Fitzgerald D, Odetunde A, Khramtsova G, Hurley I, Popoola A, Falusi A, Ogundiran T, ... ... White KP, et al. Germline variants and somatic mutation signatures of breast cancer across populations of African and European ancestry in the US and Nigeria. International Journal of Cancer. PMID 31173346 DOI: 10.1002/Ijc.32498  0.316
2019 Beaubier N, Tell R, Lau D, Parsons JR, Bush S, Perera J, Sorrells S, Baker T, Chang A, Michuda J, Iguartua C, MacNeil S, Shah K, Ellis P, Yeatts K, ... ... White KP, et al. Clinical validation of the tempus xT next-generation targeted oncology sequencing assay. Oncotarget. 10: 2384-2396. PMID 31040929 DOI: 10.18632/Oncotarget.26797  0.346
2019 Quan VL, Zhang B, Mohan LS, Shi K, Isales MC, Panah E, Taxter TJ, Beaubier N, White K, Gerami P. Activating Structural Alterations In MAPK Genes Are Distinct Genetic Drivers In a Unique Subgroup Of Spitzoid Neoplasms. The American Journal of Surgical Pathology. PMID 30640733 DOI: 10.1097/PAS.0000000000001213  0.343
2019 Sadaps M, Funchain P, Heald B, Huether R, Pitt J, White K, Khorana AA, Sohal D. A multi-institutional study assessing prevalence of deleterious germline mutations in pancreatic cancer. Journal of Clinical Oncology. 37: 280-280. DOI: 10.1200/Jco.2019.37.4_Suppl.280  0.306
2019 Hattori M, Rajagopal PS, Sveen L, Khramtsova G, Yoshimatsu T, Beaubier N, Barber M, Abboushi T, Fang L, Zheng Y, White K, Huo D, Olopade OI. Genomic profiling of residual tumor after neoadjuvant chemotherapy for breast cancer. Journal of Clinical Oncology. 37: e12106-e12106. DOI: 10.1200/Jco.2019.37.15_Suppl.E12106  0.303
2019 Rajagopal PS, Beaubier N, Hattori M, Sveen L, Khramtsova G, Abboushi T, Barber M, Liu F, Yoshimatsu T, Zheng Y, White K, Huo D, Olopade OI. Determining clinical relevance of genomic heterogeneity in an ethnically diverse cohort of newly diagnosed patients with breast cancer. Journal of Clinical Oncology. 37: 3084-3084. DOI: 10.1200/Jco.2019.37.15_Suppl.3084  0.346
2019 Ansari-Pour N, Pitt JJ, Dentro S, Fitzgerald D, Zheng Y, Yoshimatsu TF, Rajagopal P, Gruber A, Sanni A, Oluwasola O, Ajani M, Odetunde A, Popoola A, Falusi A, Ogundiran T, ... ... White KP, et al. Abstract LB-300: The life history of breast cancer in Nigerian women: Evidence for ethnic differences in tumor evolution based on whole-genome sequencing Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-300  0.323
2019 Wang D, Gerstein M, Weng Z, Peters M, Liu C, White K, Geschwind D. UNDERSTANDING SINGLE CELL FUNCTIONAL GENOMICS FOR NEUROPSYCHIATRIC DISORDERS European Neuropsychopharmacology. 29: S46. DOI: 10.1016/J.Euroneuro.2019.07.093  0.325
2018 Meng Q, Wang K, Brunetti T, Xia Y, Jiao C, Dai R, Fitzgerald D, Thomas A, Jay L, Eckart H, Grennan K, Imamura-Kawasawa Y, Li M, Sestan N, White KP, et al. The long noncoding RNA may regulate expression of several schizophrenia-related genes. Science Translational Medicine. PMID 30545965 DOI: 10.1126/Scitranslmed.Aat6912  0.426
2018 Chen C, Meng Q, Xia Y, Ding C, Wang L, Dai R, Cheng L, Gunaratne P, Gibbs RA, Min S, Coarfa C, Reid JG, Zhang C, Jiao C, Jiang Y, ... ... White KP, et al. The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders. Science Translational Medicine. PMID 30545964 DOI: 10.1126/Scitranslmed.Aat8178  0.397
2018 Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, ... ... White KP, et al. Comprehensive functional genomic resource and integrative model for the human brain. Science (New York, N.Y.). 362. PMID 30545857 DOI: 10.1126/Science.Aat8464  0.399
2018 Gandal MJ, Zhang P, Hadjimichael E, Walker RL, Chen C, Liu S, Won H, van Bakel H, Varghese M, Wang Y, Shieh AW, Haney J, Parhami S, Belmont J, Kim M, ... ... White K, et al. Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder. Science (New York, N.Y.). 362. PMID 30545856 DOI: 10.1126/Science.Aat8127  0.334
2018 Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, ... ... White KP, et al. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution. PMID 30510174 DOI: 10.1038/S41559-018-0733-X  0.418
2018 Isales MC, Mohan LS, Quan VL, Garfield EM, Zhang B, Shi K, Arva N, Beaubier N, Yazdan P, White K, Taxter TJ, Gerami P. Distinct Genomic Patterns in Pigmented Epithelioid Melanocytoma: A Molecular and Histologic Analysis of 16 Cases. The American Journal of Surgical Pathology. PMID 30475255 DOI: 10.1097/Pas.0000000000001195  0.37
2018 Pitt JJ, Riester M, Zheng Y, Yoshimatsu TF, Sanni A, Oluwasola O, Veloso A, Labrot E, Wang S, Odetunde A, Ademola A, Okedere B, Mahan S, Leary R, Macomber M, ... ... White KP, et al. Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features. Nature Communications. 9: 4181. PMID 30327465 DOI: 10.1038/S41467-018-06616-0  0.329
2018 Romero-Calvo I, Weber C, Ray M, Brown M, Kirby K, Nandi RK, Long TM, Sparrow SM, Ugolkov A, Qiang W, Zhang Y, Brunetti T, Kindler H, Segal JP, Rzhetsky A, ... ... White KP, et al. Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors. Molecular Cancer Research : McR. PMID 30171177 DOI: 10.1158/1541-7786.Mcr-18-0531  0.315
2018 Bryois J, Garrett ME, Song L, Safi A, Giusti-Rodriguez P, Johnson GD, Shieh AW, Buil A, Fullard JF, Roussos P, Sklar P, Akbarian S, Haroutunian V, Stockmeier CA, Wray GA, ... White KP, et al. Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia. Nature Communications. 9: 3121. PMID 30087329 DOI: 10.1038/S41467-018-05379-Y  0.308
2018 VandenBoom T, Quan VL, Zhang B, Garfield EM, Kong BY, Isales MC, Panah E, Igartua C, Taxter T, Beaubier N, White K, Gerami P. Genomic Fusions in Pigmented Spindle Cell Nevus of Reed. The American Journal of Surgical Pathology. PMID 29794873 DOI: 10.1097/Pas.0000000000001074  0.369
2018 Wang S, Pitt JJ, Zheng Y, Yoshimatsu TF, Gao G, Riester M, Sanni A, Oluwasola O, Fitzgerald D, Ogundiran T, Babalola C, Popoola A, Falusi A, Winckler W, Obafunwa J, ... ... White KP, et al. Abstract 287: Germline variants and somatic mutation signatures in breast cancer across populations of African and European ancestry Cancer Research. 78: 287-287. DOI: 10.1158/1538-7445.Am2018-287  0.315
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... White KP, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/Genetics.117.300657  0.738
2017 Dhiman VK, Bolt MJ, White KP. Nuclear receptors in cancer - uncovering new and evolving roles through genomic analysis. Nature Reviews. Genetics. PMID 29279606 DOI: 10.1038/Nrg.2017.102  0.391
2017 Liu Y, Yu S, Dhiman VK, Brunetti T, Eckart H, White KP. Functional assessment of human enhancer activities using whole-genome STARR-sequencing. Genome Biology. 18: 219. PMID 29151363 DOI: 10.1186/S13059-017-1345-5  0.679
2017 Cheng J, Demeulemeester J, Wedge DC, Vollan HKM, Pitt JJ, Russnes HG, Pandey BP, Nilsen G, Nord S, Bignell GR, White KP, Børresen-Dale AL, Campbell PJ, Kristensen VN, Stratton MR, et al. Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Nature Communications. 8: 1221. PMID 29089486 DOI: 10.1038/s41467-017-01355-0  0.36
2017 Liu S, Liu Y, Zhang Q, Wu J, Liang J, Yu S, Wei GH, White KP, Wang X. Systematic identification of regulatory variants associated with cancer risk. Genome Biology. 18: 194. PMID 29061142 DOI: 10.1186/S13059-017-1322-Z  0.752
2017 Stark AL, Madian AG, Williams SW, Chen V, Wing C, Hause RJ, To LA, Gill AL, Myers JL, Gorsic LK, Ciaccio MF, White KP, Jones RB, Dolan ME. Identification of novel protein expression changes following cisplatin treatment and application to combination therapy. Journal of Proteome Research. PMID 28902521 DOI: 10.1021/Acs.Jproteome.7B00576  0.331
2017 Leachman SA, Mengden Koon S, Korcheva VB, White KP. Assessing Genetic Expression Profiles in Melanoma Diagnosis. Dermatologic Clinics. 35: 537-544. PMID 28886810 DOI: 10.1016/j.det.2017.06.016  0.315
2017 Stricker TP, Brown CD, Bandlamudi C, McNerney M, Kittler R, Montoya V, Peterson A, Grossman R, White KP. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. Plos Genetics. 13: e1006589. PMID 28263985 DOI: 10.1371/Journal.Pgen.1006589  0.37
2017 Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, Rodriguez AD, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. PMID 28077877 DOI: 10.1038/Nature20794  0.64
2017 Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White K. Evolution of transcript modification by N6-methyladenosine in primates. Genome Research. PMID 28052920 DOI: 10.1101/Gr.212563.116  0.506
2017 Olopade O, Pitt J, Riester M, Odetunde A, Yoshimatsu T, Labrot E, Ademola A, Sanni A, Okedere B, Mahan S, Nwosu I, Leary R, Ajani M, Johnson R, Sveen E, ... ... White K, et al. Abstract PD8-05: Comparative analysis of the genomic landscape of breast cancers from women of African and European ancestry Cancer Research. 77. DOI: 10.1158/1538-7445.Sabcs16-Pd8-05  0.326
2016 Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja J, Seiwert T, White K, McNerney ME, Fitzpatrick C, Wang YL, et al. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. The Journal of Molecular Diagnostics : Jmd. PMID 27836695 DOI: 10.1016/J.Jmoldx.2016.07.012  0.372
2016 Applebaum MA, Jha AR, Kao C, Hernandez KM, DeWane G, Salwen HR, Chlenski A, Dobratic M, Mariani CJ, Godley LA, Prabhakar N, White K, Stranger BE, Cohn SL. Integrative genomics reveals hypoxia inducible genes that are associated with a poor prognosis in neuroblastoma patients. Oncotarget. PMID 27765905 DOI: 10.18632/Oncotarget.12713  0.431
2016 Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, ... ... White KP, et al. Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation. Molecular Cell. 62: 194-206. PMID 27105115 DOI: 10.1016/J.Molcel.2016.03.036  0.332
2016 Aplebaum MA, Jha A, Chlenski A, Mariani C, Kao C, Nelson M, Hernandez K, Salwen H, Dobratic M, White K, Stranger B, Cohn SL. Abstract A01: Evaluation of hypoxia adaptation in neuroblastoma identifies reproducible transcriptional and phenotypic responses Cancer Research. 76. DOI: 10.1158/1538-7445.Pedca15-A01  0.397
2016 Pitt JJ, Yoshimatsu TF, Zheng Y, Grundstad J, Tuteja J, Wang J, Odetunde A, Khramtsova G, Clayton W, Ademola A, Ogundiran TO, Adeniji-Sofoluwe AT, Obajimi M, Adeoye A, Babalola C, ... ... White KP, et al. Abstract 4494: Whole genome sequencing reveals different patterns of mutational mechanisms in breast tumors between women of African and European descent Cancer Research. 76: 4494-4494. DOI: 10.1158/1538-7445.Am2016-4494  0.322
2015 Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... White KP, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/Nn.4156  0.372
2015 Jha AR, Zhou D, Brown CD, Kreitman M, Haddad GG, White KP. Shared genetic signals of hypoxia adaptation in Drosophila and in high-altitude human populations. Molecular Biology and Evolution. PMID 26576852 DOI: 10.1093/molbev/msv248  0.381
2015 Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation. Nature Neuroscience. 18: 1437-45. PMID 26322925 DOI: 10.1038/Nn.4099  0.748
2015 Roy S, Saha TT, Johnson L, Zhao B, Ha J, White KP, Girke T, Zou Z, Raikhel AS. Regulation of Gene Expression Patterns in Mosquito Reproduction. Plos Genetics. 11: e1005450. PMID 26274815 DOI: 10.1371/Journal.Pgen.1005450  0.389
2015 Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M. Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26044351 DOI: 10.1093/molbev/msv136  0.423
2015 Zhu Y, Xu Y, Helseth DL, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. Journal of the National Cancer Institute. 107. PMID 25956356 DOI: 10.1093/Jnci/Djv129  0.342
2015 Voce DJ, Schmitt AM, Uppal A, McNerney ME, Bernal GM, Cahill KE, Wahlstrom JS, Nassiri A, Yu X, Crawley CD, White KP, Onel K, Weichselbaum RR, Yamini B. Nfkb1 is a haploinsufficient DNA damage-specific tumor suppressor. Oncogene. 34: 2807-13. PMID 25043302 DOI: 10.1038/Onc.2014.211  0.312
2015 Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation Nature Neuroscience. DOI: 10.1038/nn.4099  0.735
2014 Wang X, Fu AQ, McNerney ME, White KP. Widespread genetic epistasis among cancer genes. Nature Communications. 5: 4828. PMID 25407795 DOI: 10.1038/Ncomms5828  0.588
2014 Chanut-Delalande H, Hashimoto Y, Pelissier-Monier A, Spokony R, Dib A, Kondo T, Bohère J, Niimi K, Latapie Y, Inagaki S, Dubois L, Valenti P, Polesello C, Kobayashi S, Moussian B, ... White KP, et al. Pri peptides are mediators of ecdysone for the temporal control of development. Nature Cell Biology. 16: 1035-44. PMID 25344753 DOI: 10.1038/Ncb3052  0.769
2014 Ozdemir A, Ma L, White KP, Stathopoulos A. Su(H)-mediated repression positions gene boundaries along the dorsal-ventral axis of Drosophila embryos. Developmental Cell. 31: 100-13. PMID 25313963 DOI: 10.1016/J.Devcel.2014.08.005  0.587
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/Pnas.1410434111  0.456
2014 Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S. Transcription factor networks in Drosophila melanogaster. Cell Reports. 8: 2031-43. PMID 25242320 DOI: 10.1016/J.Celrep.2014.08.038  0.69
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... White KP, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668  0.817
2014 Hause RJ, Stark AL, Antao NN, Gorsic LK, Chung SH, Brown CD, Wong SS, Gill DF, Myers JL, To LA, White KP, Dolan ME, Jones RB. Identification and validation of genetic variants that influence transcription factor and cell signaling protein levels. American Journal of Human Genetics. 95: 194-208. PMID 25087611 DOI: 10.1016/J.Ajhg.2014.07.005  0.362
2014 Oh H, Slattery M, Ma L, White KP, Mann RS, Irvine KD. Yorkie promotes transcription by recruiting a histone methyltransferase complex. Cell Reports. 8: 449-59. PMID 25017066 DOI: 10.1016/J.Celrep.2014.06.017  0.735
2014 Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, ... ... White KP, et al. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome Research. 24: 1224-35. PMID 24985916 DOI: 10.1101/Gr.168807.113  0.817
2014 Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research. 24: 1115-24. PMID 24985914 DOI: 10.1101/Gr.162008.113  0.82
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/Pnas.1318948111  0.568
2014 Stark AL, Hause RJ, Gorsic LK, Antao NN, Wong SS, Chung SH, Gill DF, Im HK, Myers JL, White KP, Jones RB, Dolan ME. Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy. Plos Genetics. 10: e1004192. PMID 24699359 DOI: 10.1371/Journal.Pgen.1004192  0.397
2014 Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, ... ... White KP, et al. SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer. Cancer Cell. 25: 455-68. PMID 24656772 DOI: 10.1016/J.Ccr.2014.02.007  0.348
2014 Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL. Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. Journal of the American Medical Informatics Association : Jamia. 21: 969-75. PMID 24464852 DOI: 10.1136/Amiajnl-2013-002155  0.339
2014 Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16. PMID 24408913 DOI: 10.1093/Molbev/Msu042  0.557
2014 Liu Y, Zhou J, White KP. RNA-seq differential expression studies: more sequence or more replication? Bioinformatics (Oxford, England). 30: 301-4. PMID 24319002 DOI: 10.1093/Bioinformatics/Btt688  0.678
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... White KP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112  0.431
2014 Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJT, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. Erratum: MiR-9a Minimizes the phenotypic impact of genomic diversity by buffering a transcription factor (Cell (2013) 155 (1556-1567)) Cell. 157. DOI: 10.1016/J.Cell.2014.04.003  0.315
2013 Møller EK, Kumar P, Voet T, Peterson A, Van Loo P, Mathiesen RR, Fjelldal R, Grundstad J, Borgen E, Baumbusch LO, Naume B, Børresen-Dale AL, White KP, Nord S, Kristensen VN. Next-generation sequencing of disseminated tumor cells. Frontiers in Oncology. 3: 320. PMID 24427740 DOI: 10.3389/fonc.2013.00320  0.347
2013 Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJ, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. miR-9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor. Cell. 155: 1556-67. PMID 24360277 DOI: 10.1016/J.Cell.2013.10.057  0.405
2013 Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS. Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. Plos Genetics. 9: e1003753. PMID 24039600 DOI: 10.1371/Journal.Pgen.1003753  0.794
2013 Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome Biology. 14: R86. PMID 23972280 DOI: 10.1186/Gb-2013-14-8-R86  0.808
2013 Slattery M, White KP. Enhanced dissection of the regulatory genome. Nature Methods. 10: 710-2. PMID 23900252 DOI: 10.1038/nmeth.2577  0.35
2013 Zou Z, Saha TT, Roy S, Shin SW, Backman TW, Girke T, White KP, Raikhel AS. Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression. Proceedings of the National Academy of Sciences of the United States of America. 110: E2173-81. PMID 23633570 DOI: 10.1073/Pnas.1305293110  0.41
2013 Bissonnette ML, Kocherginsky M, Tretiakova M, Jimenez RE, Barkan GA, Mehta V, Sirintrapun SJ, Steinberg GD, White KP, Stricker T, Paner GP. The different morphologies of urachal adenocarcinoma do not discriminate genomically by micro-RNA expression profiling. Human Pathology. 44: 1605-11. PMID 23528864 DOI: 10.1016/J.Humpath.2013.01.008  0.308
2013 Oh H, Slattery M, Ma L, Crofts A, White KP, Mann RS, Irvine KD. Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes. Cell Reports. 3: 309-18. PMID 23395637 DOI: 10.1016/J.Celrep.2013.01.008  0.767
2013 Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A comprehensive nuclear receptor network for breast cancer cells. Cell Reports. 3: 538-51. PMID 23375374 DOI: 10.1016/J.Celrep.2013.01.004  0.794
2013 Jiang ZF, Xia F, Johnson KW, Brown CD, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Comparison of the genome sequences of "Candidatus Portiera aleyrodidarum" primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes. Applied and Environmental Microbiology. 79: 1757-9. PMID 23315735 DOI: 10.1128/AEM.02976-12  0.358
2013 McNerney ME, Brown CD, Wang X, Bartom ET, Karmakar S, Bandlamudi C, Yu S, Ko J, Sandall BP, Stricker T, Anastasi J, Grossman RL, Cunningham JM, Le Beau MM, White KP. CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia. Blood. 121: 975-83. PMID 23212519 DOI: 10.1182/Blood-2012-04-426965  0.615
2013 Webber JL, Zhang J, Cote L, Vivekanand P, Ni X, Zhou J, Nègre N, Carthew RW, White KP, Rebay I. The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan. Genetics. 193: 633-49. PMID 23172856 DOI: 10.1534/Genetics.112.146647  0.664
2012 Acharya P, Negre N, Johnston J, Wei Y, White KP, Henry RW, Arnosti DN. Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein. G3 (Bethesda, Md.). 2: 1459-72. PMID 23173097 DOI: 10.1534/G3.112.004424  0.732
2012 Jiang ZF, Xia F, Johnson KW, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Genome sequences of the primary endosymbiont "Candidatus Portiera aleyrodidarum" in the whitefly Bemisia tabaci B and Q biotypes. Journal of Bacteriology. 194: 6678-9. PMID 23144417 DOI: 10.1128/JB.01841-12  0.319
2012 Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. Plos Biology. 10: e1001420. PMID 23139640 DOI: 10.1371/Journal.Pbio.1001420  0.78
2012 White K, Loscalzo J, Chan SY. Holding our breath: The emerging and anticipated roles of microRNA in pulmonary hypertension. Pulmonary Circulation. 2: 278-90. PMID 23130098 DOI: 10.4103/2045-8932.101395  0.319
2012 Slattery M, Nègre N, White KP. Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster. Briefings in Functional Genomics. 11: 336-46. PMID 23023663 DOI: 10.1093/bfgp/els034  0.739
2012 Hekman KE, Yu GY, Brown CD, Zhu H, Du X, Gervin K, Undlien DE, Peterson A, Stevanin G, Clark HB, Pulst SM, Bird TD, White KP, Gomez CM. A conserved eEF2 coding variant in SCA26 leads to loss of translational fidelity and increased susceptibility to proteostatic insult. Human Molecular Genetics. 21: 5472-83. PMID 23001565 DOI: 10.1093/Hmg/Dds392  0.35
2012 Marin EC, Dry KE, Alaimo DR, Rudd KT, Cillo AR, Clenshaw ME, Negre N, White KP, Truman JW. Ultrabithorax confers spatial identity in a context-specific manner in the Drosophila postembryonic ventral nervous system. Neural Development. 7: 31. PMID 22967828 DOI: 10.1186/1749-8104-7-31  0.661
2012 Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... White KP, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/Gr.136184.111  0.617
2012 Nagaraj R, Gururaja-Rao S, Jones KT, Slattery M, Negre N, Braas D, Christofk H, White KP, Mann R, Banerjee U. Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway. Genes & Development. 26: 2027-37. PMID 22925885 DOI: 10.1101/gad.183061.111  0.726
2012 Chen S, Spletter M, Ni X, White KP, Luo L, Long M. Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Reports. 1: 118-32. PMID 22832161 DOI: 10.1016/J.Celrep.2011.12.010  0.594
2012 Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. The Embo Journal. 31: 2798-809. PMID 22543869 DOI: 10.1038/Emboj.2012.108  0.658
2012 Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/Nmeth.1985  0.708
2012 Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression. Plos Genetics. 8: e1002596. PMID 22479195 DOI: 10.1371/Journal.Pgen.1002596  0.716
2012 Doré LC, Chlon TM, Brown CD, White KP, Crispino JD. Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis. Blood. 119: 3724-33. PMID 22383799 DOI: 10.1182/Blood-2011-09-380634  0.478
2012 Grossman RL, White KP. A vision for a biomedical cloud. Journal of Internal Medicine. 271: 122-30. PMID 22142244 DOI: 10.1111/j.1365-2796.2011.02491.x  0.302
2012 Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR. Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics (Oxford, England). 28: 206-13. PMID 22084256 DOI: 10.1093/Bioinformatics/Btr628  0.476
2012 Seiwert TY, Keck MK, Zuo Z, Khattri A, Brown C, Stricker T, Rieke D, Lingen MW, Cohen EEW, White KP, Vokes EE. Genomic profiling of a clinically annotated cohort of locoregionally advanced head and neck cancers (HNC) treated with definitive chemoradiotherapy. Journal of Clinical Oncology. 30: 5517-5517. DOI: 10.1200/Jco.2012.30.15_Suppl.5517  0.403
2012 McNerney ME, Brown CD, Wang X, Karmakar S, Bandlamudi C, Yu S, Anastasi J, Beau MML, White K. Abstract LB-411: RNA sequencing reveals CUX1 to be a conserved tumor suppressor in acute myeloid leukemia associated with loss or deletion of chromosome 7 Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-411  0.59
2012 Liu Y, Zhou J, White KP. Abstract 4935: A quantitative model to study cell-type-specific transcriptional regulation between MCF-7 and LNCaP Cancer Research. 72: 4935-4935. DOI: 10.1158/1538-7445.Am2012-4935  0.706
2012 Stark AL, Hause RJ, Gorsic LK, Antao NN, Chung SH, Gill DF, White KP, Jones RB, Dolan ME. Abstract 1880: Incorporating protein levels with genetic variation and gene expression in sensitivity to chemotherapy Cancer Research. 72: 1880-1880. DOI: 10.1158/1538-7445.Am2012-1880  0.38
2011 Ludwig MZ, Manu, Kittler R, White KP, Kreitman M. Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. Plos Genetics. 7: e1002364. PMID 22102826 DOI: 10.1371/journal.pgen.1002364  0.626
2011 Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, Victorsen A, White KP, Kellis M. Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome Research. 21: 2096-113. PMID 21994247 DOI: 10.1101/Gr.119974.110  0.813
2011 Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, Zhai W, Cai J, Ling S, Gong Q, Chong Z, Qu Z, Li Q, Liu J, Yang J, Zheng C, ... ... White KP, et al. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proceedings of the National Academy of Sciences of the United States of America. 108: 12042-7. PMID 21730188 DOI: 10.1073/Pnas.1108715108  0.502
2011 Wang Y, Wu W, Negre NN, White KP, Li C, Shah PK. Determinants of antigenicity and specificity in immune response for protein sequences. Bmc Bioinformatics. 12: 251. PMID 21693021 DOI: 10.1186/1471-2105-12-251  0.667
2011 Quan J, Saaem I, Tang N, Ma S, Negre N, Gong H, White KP, Tian J. Parallel on-chip gene synthesis and application to optimization of protein expression. Nature Biotechnology. 29: 449-52. PMID 21516083 DOI: 10.1038/Nbt.1847  0.702
2011 Slattery M, Ma L, Négre N, White KP, Mann RS. Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila. Plos One. 6: e14686. PMID 21483663 DOI: 10.1371/Journal.Pone.0014686  0.809
2011 Wang X, White KP. Large-scale genetic epistasis networks using RNAi. Nature Methods. 8: 299-301. PMID 21451517 DOI: 10.1038/Nmeth0411-299  0.543
2011 Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, ... ... White KP, et al. A cis-regulatory map of the Drosophila genome. Nature. 471: 527-31. PMID 21430782 DOI: 10.1038/Nature09990  0.826
2011 Godley LA, Cunningham J, Dolan ME, Huang RS, Gurbuxani S, McNerney ME, Larson RA, Leong H, Lussier Y, Onel K, Odenike O, Stock W, White KP, Le Beau MM. An integrated genomic approach to the assessment and treatment of acute myeloid leukemia. Seminars in Oncology. 38: 215-24. PMID 21421111 DOI: 10.1053/J.Seminoncol.2011.01.003  0.396
2011 Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis. Bmc Genomics. 12: 134. PMID 21356108 DOI: 10.1186/1471-2164-12-134  0.704
2011 Al-Dhaheri M, Wu J, Skliris GP, Li J, Higashimato K, Wang Y, White KP, Lambert P, Zhu Y, Murphy L, Xu W. CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells. Cancer Research. 71: 2118-28. PMID 21282336 DOI: 10.1158/0008-5472.Can-10-2426  0.337
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... White KP, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  0.826
2010 Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/Journal.Pgen.1000814  0.45
2010 McNerney ME, Brown CD, White KP. Next-Generation Sequencing Analysis of 23 Therapy-Related Acute Myeloid Leukemia Transcriptomes Blood. 116: 850-850. DOI: 10.1182/Blood.V116.21.850.850  0.313
2010 Braegelmann J, Stricker T, Brown C, Dinali ME, Zou X, Vokes E, White K, Seiwert T. 255 Transcriptome sequencing of upper aerodigestive tract cancer cell lines to reveal potential therapeutic targets European Journal of Cancer Supplements. 8: 84. DOI: 10.1016/S1359-6349(10)71961-3  0.302
2009 Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL. Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. Bioinformatics (Oxford, England). 25: 3001-4. PMID 19656951 DOI: 10.1093/bioinformatics/btp469  0.754
2009 Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell. 137: 1259-71. PMID 19563758 DOI: 10.1016/J.Cell.2009.04.043  0.761
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927A  0.503
2009 Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, Bellen HJ, Hoskins RA. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nature Methods. 6: 431-4. PMID 19465919 DOI: 10.1038/Nmeth.1331  0.79
2009 Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li TR, Boutros M, White KP. Genomic mapping of binding regions for the Ecdysone receptor protein complex. Genome Research. 19: 1006-13. PMID 19237466 DOI: 10.1101/Gr.081349.108  0.811
2009 Liu J, Ghanim M, Xue L, Brown CD, Iossifov I, Angeletti C, Hua S, Nègre N, Ludwig M, Stricker T, Al-Ahmadie HA, Tretiakova M, Camp RL, Perera-Alberto M, Rimm DL, ... ... White KP, et al. Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer. Science (New York, N.Y.). 323: 1218-22. PMID 19164706 DOI: 10.1126/Science.1157669  0.792
2009 Neretti N, Wang PY, Brodsky AS, Nyguyen HH, White KP, Rogina B, Helfand SL. Long-lived Indy induces reduced mitochondrial reactive oxygen species production and oxidative damage. Proceedings of the National Academy of Sciences of the United States of America. 106: 2277-82. PMID 19164521 DOI: 10.1073/Pnas.0812484106  0.586
2009 Dinali ME, Braegelmann J, Stricker T, Brown C, Salgia R, Vokes E, White K, Seiwert T. Abstract A207: Whole transcriptome profiling in upper aerodigestive tract cancers Molecular Cancer Therapeutics. 8. DOI: 10.1158/1535-7163.Targ-09-A207  0.407
2008 Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. Plos Genetics. 4: e1000221. PMID 18927626 DOI: 10.1371/journal.pgen.1000221  0.356
2008 Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Molecular Biology and Evolution. 25: 2269-77. PMID 18755761 DOI: 10.1093/Molbev/Msn189  0.371
2008 Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Molecular Systems Biology. 4: 188. PMID 18414489 DOI: 10.1038/Msb.2008.25  0.763
2008 Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... White KP, et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nature Methods. 5: 409-15. PMID 18391959 DOI: 10.1038/Nmeth.1199  0.743
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/J.Gene.2007.10.012  0.388
2008 Poser I, Sarov M, Hutchins JRA, Hériché J, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... White KP, et al. Erratum: Corrigendum: BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals Nature Methods. 5: 748-748. DOI: 10.1038/Nmeth0808-748B  0.704
2007 Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/Msb4100112  0.451
2006 Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 103: 12027-32. PMID 16880385 DOI: 10.1073/Pnas.0605003103  0.485
2006 Halasz G, van Batenburg MF, Perusse J, Hua S, Lu XJ, White KP, Bussemaker HJ. Detecting transcriptionally active regions using genomic tiling arrays. Genome Biology. 7: R59. PMID 16859498 DOI: 10.1186/Gb-2006-7-7-R59  0.784
2006 Nègre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G. Chromosomal distribution of PcG proteins during Drosophila development. Plos Biology. 4: e170. PMID 16613483 DOI: 10.1371/journal.pbio.0040170  0.773
2006 Gilad Y, Oshlack A, Smyth GK, Speed TP, White KP. Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature. 440: 242-5. PMID 16525476 DOI: 10.1038/nature04559  0.409
2005 Rifkin SA, Houle D, Kim J, White KP. A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression. Nature. 438: 220-3. PMID 16281035 DOI: 10.1038/Nature04114  0.766
2005 Meister S, Kanzok SM, Zheng XL, Luna C, Li TR, Hoa NT, Clayton JR, White KP, Kafatos FC, Christophides GK, Zheng L. Immune signaling pathways regulating bacterial and malaria parasite infection of the mosquito Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 11420-5. PMID 16076953 DOI: 10.1073/pnas.0504950102  0.306
2005 Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Research. 15: 674-80. PMID 15867429 DOI: 10.1101/Gr.3335705  0.7
2005 Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... White KP, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305  0.773
2005 Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin S, Chang J, Zhang H, White K, Williams K, Schultz M. A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies. Journal of the American Medical Informatics Association : Jamia. 12: 90-8. PMID 15492032 DOI: 10.1197/Jamia.M1571  0.659
2004 Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (New York, N.Y.). 306: 655-60. PMID 15499012 DOI: 10.1126/Science.1101312  0.805
2004 Gu Z, Rifkin SA, White KP, Li WH. Duplicate genes increase gene expression diversity within and between species. Nature Genetics. 36: 577-9. PMID 15122255 DOI: 10.1038/Ng1355  0.678
2003 Field HA, White KP. Developments in developmental genomics. Genome Biology. 4: 345. PMID 14611654 DOI: 10.1186/Gb-2003-4-11-345  0.353
2003 Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, ... ... White KP, et al. A protein interaction map of Drosophila melanogaster. Science (New York, N.Y.). 302: 1727-36. PMID 14605208 DOI: 10.1126/Science.1090289  0.313
2003 Sun LV, Chen L, Greil F, Negre N, Li TR, Cavalli G, Zhao H, Van Steensel B, White KP. Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 100: 9428-33. PMID 12876199 DOI: 10.1073/pnas.1533393100  0.753
2003 Li TR, White KP. Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Developmental Cell. 5: 59-72. PMID 12852852 DOI: 10.1016/S1534-5807(03)00192-8  0.428
2003 Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ. Analysis of the eye developmental pathway in Drosophila using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 100: 4024-9. PMID 12655063 DOI: 10.1073/pnas.0630561100  0.396
2003 Rifkin SA, Kim J, White KP. Evolution of gene expression in the Drosophila melanogaster subgroup. Nature Genetics. 33: 138-44. PMID 12548287 DOI: 10.1038/Ng1086  0.79
2002 Cheung KH, Hager J, Nelson K, White K, Li Y, Snyder M, Williams K, Miller P. A dynamic approach to mapping coordinates between microplates and microarrays. Journal of Biomedical Informatics. 35: 306-12. PMID 12968779 DOI: 10.1016/S1532-0464(03)00033-9  0.433
2002 Cheung KH, White K, Hager J, Gerstein M, Reinke V, Nelson K, Masiar P, Srivastava R, Li Y, Li J, Zhao H, Li J, Allison DB, Snyder M, Miller P, et al. YMD: a microarray database for large-scale gene expression analysis. Proceedings / Amia ... Annual Symposium. Amia Symposium. 140-4. PMID 12463803  0.422
2002 Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/Science.1072152  0.65
2002 Reinke V, White KP. Developmental genomic approaches in model organisms. Annual Review of Genomics and Human Genetics. 3: 153-78. PMID 12142361 DOI: 10.1146/Annurev.Genom.3.031302.100922  0.397
2002 Dimopoulos G, Christophides GK, Meister S, Schultz J, White KP, Barillas-Mury C, Kafatos FC. Genome expression analysis of Anopheles gambiae: responses to injury, bacterial challenge, and malaria infection. Proceedings of the National Academy of Sciences of the United States of America. 99: 8814-9. PMID 12077297 DOI: 10.1073/Pnas.092274999  0.378
2002 Toma DP, White KP, Hirsch J, Greenspan RJ. Identification of genes involved in Drosophila melanogaster geotaxis, a complex behavioral trait. Nature Genetics. 31: 349-53. PMID 12042820 DOI: 10.1038/Ng893  0.345
2001 Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genetics. 29: 389-95. PMID 11726925 DOI: 10.1038/ng766  0.545
2001 Furlong EE, Andersen EC, Null B, White KP, Scott MP. Patterns of gene expression during Drosophila mesoderm development. Science (New York, N.Y.). 293: 1629-33. PMID 11486054 DOI: 10.1126/Science.1062660  0.372
2001 White KP. Functional genomics and the study of development, variation and evolution Nature Reviews Genetics. 2: 528-537. PMID 11433359 DOI: 10.1038/35080565  0.334
2000 Teeter K, Naeemuddin M, Gasperini R, Zimmerman E, White KP, Hoskins R, Gibson G. Haplotype dimorphism in a SNP collection from Drosophila melanogaster. The Journal of Experimental Zoology. 288: 63-75. PMID 10750054 DOI: 10.1002/(Sici)1097-010X(20000415)288:1<63::Aid-Jez7>3.0.Co;2-1  0.543
1999 White KP, Rifkin SA, Hurban P, Hogness DS. Microarray analysis of Drosophila development during metamorphosis. Science (New York, N.Y.). 286: 2179-84. PMID 10591654 DOI: 10.1126/Science.286.5447.2179  0.802
1997 White KP, Hurban P, Watanabe T, Hogness DS. Coordination of Drosophila metamorphosis by two ecdysone-induced nuclear receptors. Science (New York, N.Y.). 276: 114-7. PMID 9082981 DOI: 10.1126/science.276.5309.114  0.625
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