| Year |
Citation |
Score |
| 2022 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, ... ... White KP, et al. Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. PMID 35474001 DOI: 10.1038/s41586-021-04226-3 |
0.392 |
|
| 2021 |
Krinsky BH, Arthur RK, Xia S, Sosa D, Arsala D, White KP, Long M. Rapid Cis-Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4-NOT Component in . Genes. 13. PMID 35052398 DOI: 10.3390/genes13010057 |
0.405 |
|
| 2021 |
Sheng T, Ho SWT, Ooi WF, Xu C, Xing M, Padmanabhan N, Huang KK, Ma L, Ray M, Guo YA, Sim NL, Anene-Nzelu CG, Chang MM, Razavi-Mohseni M, Beer MA, ... ... White KP, et al. Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer. Genome Medicine. 13: 158. PMID 34635154 DOI: 10.1186/s13073-021-00970-3 |
0.49 |
|
| 2020 |
Lee D, Shi M, Moran J, Wall M, Zhang J, Liu J, Fitzgerald D, Kyono Y, Ma L, White KP, Gerstein M. STARRPeaker: uniform processing and accurate identification of STARR-seq active regions. Genome Biology. 21: 298. PMID 33292397 DOI: 10.1186/s13059-020-02194-x |
0.767 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... White KP, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.553 |
|
| 2020 |
Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, ... ... White KP, et al. An integrative ENCODE resource for cancer genomics. Nature Communications. 11: 3696. PMID 32728046 DOI: 10.1038/S41467-020-14743-W |
0.818 |
|
| 2020 |
Xing M, Ooi WF, Tan J, Qamra A, Lee PH, Li Z, Xu C, Padmanabhan N, Lim JQ, Guo YA, Yao X, Amit M, Ng LM, Sheng T, Wang J, ... ... White K, et al. Genomic and epigenomic EBF1 alterations modulate TERT expression in gastric cancer. The Journal of Clinical Investigation. PMID 32364535 DOI: 10.1172/Jci126726 |
0.611 |
|
| 2020 |
Zraly CB, Zakkar A, Perez JH, Ng J, White KP, Slattery M, Dingwall AK. The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development. Nucleic Acids Research. PMID 32052053 DOI: 10.1093/Nar/Gkaa082 |
0.375 |
|
| 2020 |
Quan VL, Zhang B, Zhang Y, Mohan LS, Shi K, Wagner A, Kruse L, Taxter T, Beaubier N, Beaubier, White K, Zou L, Gerami P. Integrating Next Generation Sequencing with Morphology Improves Prognostic and Biologic Classification of Spitz Neoplasms. The Journal of Investigative Dermatology. PMID 32004563 DOI: 10.1016/j.jid.2019.12.031 |
0.348 |
|
| 2020 |
Mohan LS, Khan AU, Zhang B, Quan VL, Shi K, Panah E, Isales MC, Yazdan P, Zhang Y, Beaubier N, Taxter TJ, Compres EV, Kim D, White KP, Gerami P. Retrospective Cohort: Genomic Differences Between Pigmented Spindle Cell Nevi of Reed and Reed-Like Melanomas. The American Journal of Dermatopathology. PMID 32000215 DOI: 10.1097/DAD.0000000000001603 |
0.313 |
|
| 2019 |
Beaubier N, Bontrager M, Huether R, Igartua C, Lau D, Tell R, Bobe AM, Bush S, Chang AL, Hoskinson DC, Khan AA, Kudalkar E, Leibowitz BD, Lozachmeur A, Michuda J, ... ... White KP, et al. Integrated genomic profiling expands clinical options for patients with cancer. Nature Biotechnology. PMID 31570899 DOI: 10.1038/S41587-019-0259-Z |
0.319 |
|
| 2019 |
Ooi WF, Nargund AM, Lim KJ, Zhang S, Xing M, Mandoli A, Lim JQ, Ho SWT, Guo Y, Yao X, Lin SJ, Nandi T, Xu C, Ong X, Lee M, ... ... White KP, et al. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent and enhancer hijacking in primary gastric adenocarcinoma. Gut. PMID 31542774 DOI: 10.1136/gutjnl-2018-317612 |
0.381 |
|
| 2019 |
Shi K, Zhang B, Kong BY, Zhang Y, Igartua C, Mohan LS, Quan VL, Panah E, Isales MC, Beaubier N, Taxter TJ, White KP, Zou L, Gerami P. Distinct Genomic Features in a Retrospective Cohort of Mucosal, Acral and Vulvovaginal Melanomas. Journal of the American Academy of Dermatology. PMID 31306728 DOI: 10.1016/J.Jaad.2019.07.017 |
0.304 |
|
| 2019 |
Wang S, Pitt JJ, Zheng Y, Yoshimatsu TF, Gao G, Sanni A, Oluwasola O, Ajani M, Fitzgerald D, Odetunde A, Khramtsova G, Hurley I, Popoola A, Falusi A, Ogundiran T, ... ... White KP, et al. Germline variants and somatic mutation signatures of breast cancer across populations of African and European ancestry in the US and Nigeria. International Journal of Cancer. PMID 31173346 DOI: 10.1002/Ijc.32498 |
0.316 |
|
| 2019 |
Beaubier N, Tell R, Lau D, Parsons JR, Bush S, Perera J, Sorrells S, Baker T, Chang A, Michuda J, Iguartua C, MacNeil S, Shah K, Ellis P, Yeatts K, ... ... White KP, et al. Clinical validation of the tempus xT next-generation targeted oncology sequencing assay. Oncotarget. 10: 2384-2396. PMID 31040929 DOI: 10.18632/Oncotarget.26797 |
0.346 |
|
| 2019 |
Quan VL, Zhang B, Mohan LS, Shi K, Isales MC, Panah E, Taxter TJ, Beaubier N, White K, Gerami P. Activating Structural Alterations In MAPK Genes Are Distinct Genetic Drivers In a Unique Subgroup Of Spitzoid Neoplasms. The American Journal of Surgical Pathology. PMID 30640733 DOI: 10.1097/PAS.0000000000001213 |
0.343 |
|
| 2019 |
Sadaps M, Funchain P, Heald B, Huether R, Pitt J, White K, Khorana AA, Sohal D. A multi-institutional study assessing prevalence of deleterious germline mutations in pancreatic cancer. Journal of Clinical Oncology. 37: 280-280. DOI: 10.1200/Jco.2019.37.4_Suppl.280 |
0.306 |
|
| 2019 |
Hattori M, Rajagopal PS, Sveen L, Khramtsova G, Yoshimatsu T, Beaubier N, Barber M, Abboushi T, Fang L, Zheng Y, White K, Huo D, Olopade OI. Genomic profiling of residual tumor after neoadjuvant chemotherapy for breast cancer. Journal of Clinical Oncology. 37: e12106-e12106. DOI: 10.1200/Jco.2019.37.15_Suppl.E12106 |
0.303 |
|
| 2019 |
Rajagopal PS, Beaubier N, Hattori M, Sveen L, Khramtsova G, Abboushi T, Barber M, Liu F, Yoshimatsu T, Zheng Y, White K, Huo D, Olopade OI. Determining clinical relevance of genomic heterogeneity in an ethnically diverse cohort of newly diagnosed patients with breast cancer. Journal of Clinical Oncology. 37: 3084-3084. DOI: 10.1200/Jco.2019.37.15_Suppl.3084 |
0.346 |
|
| 2019 |
Ansari-Pour N, Pitt JJ, Dentro S, Fitzgerald D, Zheng Y, Yoshimatsu TF, Rajagopal P, Gruber A, Sanni A, Oluwasola O, Ajani M, Odetunde A, Popoola A, Falusi A, Ogundiran T, ... ... White KP, et al. Abstract LB-300: The life history of breast cancer in Nigerian women: Evidence for ethnic differences in tumor evolution based on whole-genome sequencing Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-300 |
0.323 |
|
| 2019 |
Wang D, Gerstein M, Weng Z, Peters M, Liu C, White K, Geschwind D. UNDERSTANDING SINGLE CELL FUNCTIONAL GENOMICS FOR NEUROPSYCHIATRIC DISORDERS European Neuropsychopharmacology. 29: S46. DOI: 10.1016/J.Euroneuro.2019.07.093 |
0.325 |
|
| 2018 |
Meng Q, Wang K, Brunetti T, Xia Y, Jiao C, Dai R, Fitzgerald D, Thomas A, Jay L, Eckart H, Grennan K, Imamura-Kawasawa Y, Li M, Sestan N, White KP, et al. The long noncoding RNA may regulate expression of several schizophrenia-related genes. Science Translational Medicine. PMID 30545965 DOI: 10.1126/Scitranslmed.Aat6912 |
0.426 |
|
| 2018 |
Chen C, Meng Q, Xia Y, Ding C, Wang L, Dai R, Cheng L, Gunaratne P, Gibbs RA, Min S, Coarfa C, Reid JG, Zhang C, Jiao C, Jiang Y, ... ... White KP, et al. The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders. Science Translational Medicine. PMID 30545964 DOI: 10.1126/Scitranslmed.Aat8178 |
0.397 |
|
| 2018 |
Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, ... ... White KP, et al. Comprehensive functional genomic resource and integrative model for the human brain. Science (New York, N.Y.). 362. PMID 30545857 DOI: 10.1126/Science.Aat8464 |
0.399 |
|
| 2018 |
Gandal MJ, Zhang P, Hadjimichael E, Walker RL, Chen C, Liu S, Won H, van Bakel H, Varghese M, Wang Y, Shieh AW, Haney J, Parhami S, Belmont J, Kim M, ... ... White K, et al. Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder. Science (New York, N.Y.). 362. PMID 30545856 DOI: 10.1126/Science.Aat8127 |
0.334 |
|
| 2018 |
Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, ... ... White KP, et al. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution. PMID 30510174 DOI: 10.1038/S41559-018-0733-X |
0.418 |
|
| 2018 |
Isales MC, Mohan LS, Quan VL, Garfield EM, Zhang B, Shi K, Arva N, Beaubier N, Yazdan P, White K, Taxter TJ, Gerami P. Distinct Genomic Patterns in Pigmented Epithelioid Melanocytoma: A Molecular and Histologic Analysis of 16 Cases. The American Journal of Surgical Pathology. PMID 30475255 DOI: 10.1097/Pas.0000000000001195 |
0.37 |
|
| 2018 |
Pitt JJ, Riester M, Zheng Y, Yoshimatsu TF, Sanni A, Oluwasola O, Veloso A, Labrot E, Wang S, Odetunde A, Ademola A, Okedere B, Mahan S, Leary R, Macomber M, ... ... White KP, et al. Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features. Nature Communications. 9: 4181. PMID 30327465 DOI: 10.1038/S41467-018-06616-0 |
0.329 |
|
| 2018 |
Romero-Calvo I, Weber C, Ray M, Brown M, Kirby K, Nandi RK, Long TM, Sparrow SM, Ugolkov A, Qiang W, Zhang Y, Brunetti T, Kindler H, Segal JP, Rzhetsky A, ... ... White KP, et al. Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors. Molecular Cancer Research : McR. PMID 30171177 DOI: 10.1158/1541-7786.Mcr-18-0531 |
0.315 |
|
| 2018 |
Bryois J, Garrett ME, Song L, Safi A, Giusti-Rodriguez P, Johnson GD, Shieh AW, Buil A, Fullard JF, Roussos P, Sklar P, Akbarian S, Haroutunian V, Stockmeier CA, Wray GA, ... White KP, et al. Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia. Nature Communications. 9: 3121. PMID 30087329 DOI: 10.1038/S41467-018-05379-Y |
0.308 |
|
| 2018 |
VandenBoom T, Quan VL, Zhang B, Garfield EM, Kong BY, Isales MC, Panah E, Igartua C, Taxter T, Beaubier N, White K, Gerami P. Genomic Fusions in Pigmented Spindle Cell Nevus of Reed. The American Journal of Surgical Pathology. PMID 29794873 DOI: 10.1097/Pas.0000000000001074 |
0.369 |
|
| 2018 |
Wang S, Pitt JJ, Zheng Y, Yoshimatsu TF, Gao G, Riester M, Sanni A, Oluwasola O, Fitzgerald D, Ogundiran T, Babalola C, Popoola A, Falusi A, Winckler W, Obafunwa J, ... ... White KP, et al. Abstract 287: Germline variants and somatic mutation signatures in breast cancer across populations of African and European ancestry Cancer Research. 78: 287-287. DOI: 10.1158/1538-7445.Am2018-287 |
0.315 |
|
| 2017 |
Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... White KP, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/Genetics.117.300657 |
0.738 |
|
| 2017 |
Dhiman VK, Bolt MJ, White KP. Nuclear receptors in cancer - uncovering new and evolving roles through genomic analysis. Nature Reviews. Genetics. PMID 29279606 DOI: 10.1038/Nrg.2017.102 |
0.391 |
|
| 2017 |
Liu Y, Yu S, Dhiman VK, Brunetti T, Eckart H, White KP. Functional assessment of human enhancer activities using whole-genome STARR-sequencing. Genome Biology. 18: 219. PMID 29151363 DOI: 10.1186/S13059-017-1345-5 |
0.679 |
|
| 2017 |
Cheng J, Demeulemeester J, Wedge DC, Vollan HKM, Pitt JJ, Russnes HG, Pandey BP, Nilsen G, Nord S, Bignell GR, White KP, Børresen-Dale AL, Campbell PJ, Kristensen VN, Stratton MR, et al. Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Nature Communications. 8: 1221. PMID 29089486 DOI: 10.1038/s41467-017-01355-0 |
0.36 |
|
| 2017 |
Liu S, Liu Y, Zhang Q, Wu J, Liang J, Yu S, Wei GH, White KP, Wang X. Systematic identification of regulatory variants associated with cancer risk. Genome Biology. 18: 194. PMID 29061142 DOI: 10.1186/S13059-017-1322-Z |
0.752 |
|
| 2017 |
Stark AL, Madian AG, Williams SW, Chen V, Wing C, Hause RJ, To LA, Gill AL, Myers JL, Gorsic LK, Ciaccio MF, White KP, Jones RB, Dolan ME. Identification of novel protein expression changes following cisplatin treatment and application to combination therapy. Journal of Proteome Research. PMID 28902521 DOI: 10.1021/Acs.Jproteome.7B00576 |
0.331 |
|
| 2017 |
Leachman SA, Mengden Koon S, Korcheva VB, White KP. Assessing Genetic Expression Profiles in Melanoma Diagnosis. Dermatologic Clinics. 35: 537-544. PMID 28886810 DOI: 10.1016/j.det.2017.06.016 |
0.315 |
|
| 2017 |
Stricker TP, Brown CD, Bandlamudi C, McNerney M, Kittler R, Montoya V, Peterson A, Grossman R, White KP. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. Plos Genetics. 13: e1006589. PMID 28263985 DOI: 10.1371/Journal.Pgen.1006589 |
0.37 |
|
| 2017 |
Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, Rodriguez AD, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. PMID 28077877 DOI: 10.1038/Nature20794 |
0.64 |
|
| 2017 |
Ma L, Zhao B, Chen K, Thomas A, Tuteja JH, He X, He C, White K. Evolution of transcript modification by N6-methyladenosine in primates. Genome Research. PMID 28052920 DOI: 10.1101/Gr.212563.116 |
0.506 |
|
| 2017 |
Olopade O, Pitt J, Riester M, Odetunde A, Yoshimatsu T, Labrot E, Ademola A, Sanni A, Okedere B, Mahan S, Nwosu I, Leary R, Ajani M, Johnson R, Sveen E, ... ... White K, et al. Abstract PD8-05: Comparative analysis of the genomic landscape of breast cancers from women of African and European ancestry Cancer Research. 77. DOI: 10.1158/1538-7445.Sabcs16-Pd8-05 |
0.326 |
|
| 2016 |
Kadri S, Long BC, Mujacic I, Zhen CJ, Wurst MN, Sharma S, McDonald N, Niu N, Benhamed S, Tuteja J, Seiwert T, White K, McNerney ME, Fitzpatrick C, Wang YL, et al. Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays. The Journal of Molecular Diagnostics : Jmd. PMID 27836695 DOI: 10.1016/J.Jmoldx.2016.07.012 |
0.372 |
|
| 2016 |
Applebaum MA, Jha AR, Kao C, Hernandez KM, DeWane G, Salwen HR, Chlenski A, Dobratic M, Mariani CJ, Godley LA, Prabhakar N, White K, Stranger BE, Cohn SL. Integrative genomics reveals hypoxia inducible genes that are associated with a poor prognosis in neuroblastoma patients. Oncotarget. PMID 27765905 DOI: 10.18632/Oncotarget.12713 |
0.431 |
|
| 2016 |
Xie Z, Zhang D, Chung D, Tang Z, Huang H, Dai L, Qi S, Li J, Colak G, Chen Y, Xia C, Peng C, Ruan H, Kirkey M, Wang D, ... ... White KP, et al. Metabolic Regulation of Gene Expression by Histone Lysine β-Hydroxybutyrylation. Molecular Cell. 62: 194-206. PMID 27105115 DOI: 10.1016/J.Molcel.2016.03.036 |
0.332 |
|
| 2016 |
Aplebaum MA, Jha A, Chlenski A, Mariani C, Kao C, Nelson M, Hernandez K, Salwen H, Dobratic M, White K, Stranger B, Cohn SL. Abstract A01: Evaluation of hypoxia adaptation in neuroblastoma identifies reproducible transcriptional and phenotypic responses Cancer Research. 76. DOI: 10.1158/1538-7445.Pedca15-A01 |
0.397 |
|
| 2016 |
Pitt JJ, Yoshimatsu TF, Zheng Y, Grundstad J, Tuteja J, Wang J, Odetunde A, Khramtsova G, Clayton W, Ademola A, Ogundiran TO, Adeniji-Sofoluwe AT, Obajimi M, Adeoye A, Babalola C, ... ... White KP, et al. Abstract 4494: Whole genome sequencing reveals different patterns of mutational mechanisms in breast tumors between women of African and European descent Cancer Research. 76: 4494-4494. DOI: 10.1158/1538-7445.Am2016-4494 |
0.322 |
|
| 2015 |
Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... White KP, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/Nn.4156 |
0.372 |
|
| 2015 |
Jha AR, Zhou D, Brown CD, Kreitman M, Haddad GG, White KP. Shared genetic signals of hypoxia adaptation in Drosophila and in high-altitude human populations. Molecular Biology and Evolution. PMID 26576852 DOI: 10.1093/molbev/msv248 |
0.381 |
|
| 2015 |
Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation. Nature Neuroscience. 18: 1437-45. PMID 26322925 DOI: 10.1038/Nn.4099 |
0.748 |
|
| 2015 |
Roy S, Saha TT, Johnson L, Zhao B, Ha J, White KP, Girke T, Zou Z, Raikhel AS. Regulation of Gene Expression Patterns in Mosquito Reproduction. Plos Genetics. 11: e1005450. PMID 26274815 DOI: 10.1371/Journal.Pgen.1005450 |
0.389 |
|
| 2015 |
Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M. Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26044351 DOI: 10.1093/molbev/msv136 |
0.423 |
|
| 2015 |
Zhu Y, Xu Y, Helseth DL, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. Journal of the National Cancer Institute. 107. PMID 25956356 DOI: 10.1093/Jnci/Djv129 |
0.342 |
|
| 2015 |
Voce DJ, Schmitt AM, Uppal A, McNerney ME, Bernal GM, Cahill KE, Wahlstrom JS, Nassiri A, Yu X, Crawley CD, White KP, Onel K, Weichselbaum RR, Yamini B. Nfkb1 is a haploinsufficient DNA damage-specific tumor suppressor. Oncogene. 34: 2807-13. PMID 25043302 DOI: 10.1038/Onc.2014.211 |
0.312 |
|
| 2015 |
Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation Nature Neuroscience. DOI: 10.1038/nn.4099 |
0.735 |
|
| 2014 |
Wang X, Fu AQ, McNerney ME, White KP. Widespread genetic epistasis among cancer genes. Nature Communications. 5: 4828. PMID 25407795 DOI: 10.1038/Ncomms5828 |
0.588 |
|
| 2014 |
Chanut-Delalande H, Hashimoto Y, Pelissier-Monier A, Spokony R, Dib A, Kondo T, Bohère J, Niimi K, Latapie Y, Inagaki S, Dubois L, Valenti P, Polesello C, Kobayashi S, Moussian B, ... White KP, et al. Pri peptides are mediators of ecdysone for the temporal control of development. Nature Cell Biology. 16: 1035-44. PMID 25344753 DOI: 10.1038/Ncb3052 |
0.769 |
|
| 2014 |
Ozdemir A, Ma L, White KP, Stathopoulos A. Su(H)-mediated repression positions gene boundaries along the dorsal-ventral axis of Drosophila embryos. Developmental Cell. 31: 100-13. PMID 25313963 DOI: 10.1016/J.Devcel.2014.08.005 |
0.587 |
|
| 2014 |
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/Pnas.1410434111 |
0.456 |
|
| 2014 |
Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S. Transcription factor networks in Drosophila melanogaster. Cell Reports. 8: 2031-43. PMID 25242320 DOI: 10.1016/J.Celrep.2014.08.038 |
0.69 |
|
| 2014 |
Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... White KP, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668 |
0.817 |
|
| 2014 |
Hause RJ, Stark AL, Antao NN, Gorsic LK, Chung SH, Brown CD, Wong SS, Gill DF, Myers JL, To LA, White KP, Dolan ME, Jones RB. Identification and validation of genetic variants that influence transcription factor and cell signaling protein levels. American Journal of Human Genetics. 95: 194-208. PMID 25087611 DOI: 10.1016/J.Ajhg.2014.07.005 |
0.362 |
|
| 2014 |
Oh H, Slattery M, Ma L, White KP, Mann RS, Irvine KD. Yorkie promotes transcription by recruiting a histone methyltransferase complex. Cell Reports. 8: 449-59. PMID 25017066 DOI: 10.1016/J.Celrep.2014.06.017 |
0.735 |
|
| 2014 |
Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, ... ... White KP, et al. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome Research. 24: 1224-35. PMID 24985916 DOI: 10.1101/Gr.168807.113 |
0.817 |
|
| 2014 |
Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research. 24: 1115-24. PMID 24985914 DOI: 10.1101/Gr.162008.113 |
0.82 |
|
| 2014 |
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... White KP, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/Pnas.1318948111 |
0.568 |
|
| 2014 |
Stark AL, Hause RJ, Gorsic LK, Antao NN, Wong SS, Chung SH, Gill DF, Im HK, Myers JL, White KP, Jones RB, Dolan ME. Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy. Plos Genetics. 10: e1004192. PMID 24699359 DOI: 10.1371/Journal.Pgen.1004192 |
0.397 |
|
| 2014 |
Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, ... ... White KP, et al. SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer. Cancer Cell. 25: 455-68. PMID 24656772 DOI: 10.1016/J.Ccr.2014.02.007 |
0.348 |
|
| 2014 |
Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL. Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. Journal of the American Medical Informatics Association : Jamia. 21: 969-75. PMID 24464852 DOI: 10.1136/Amiajnl-2013-002155 |
0.339 |
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| 2014 |
Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16. PMID 24408913 DOI: 10.1093/Molbev/Msu042 |
0.557 |
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| 2014 |
Liu Y, Zhou J, White KP. RNA-seq differential expression studies: more sequence or more replication? Bioinformatics (Oxford, England). 30: 301-4. PMID 24319002 DOI: 10.1093/Bioinformatics/Btt688 |
0.678 |
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| 2014 |
Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... White KP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112 |
0.431 |
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| 2014 |
Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJT, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. Erratum: MiR-9a Minimizes the phenotypic impact of genomic diversity by buffering a transcription factor (Cell (2013) 155 (1556-1567)) Cell. 157. DOI: 10.1016/J.Cell.2014.04.003 |
0.315 |
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| 2013 |
Møller EK, Kumar P, Voet T, Peterson A, Van Loo P, Mathiesen RR, Fjelldal R, Grundstad J, Borgen E, Baumbusch LO, Naume B, Børresen-Dale AL, White KP, Nord S, Kristensen VN. Next-generation sequencing of disseminated tumor cells. Frontiers in Oncology. 3: 320. PMID 24427740 DOI: 10.3389/fonc.2013.00320 |
0.347 |
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| 2013 |
Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJ, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW. miR-9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor. Cell. 155: 1556-67. PMID 24360277 DOI: 10.1016/J.Cell.2013.10.057 |
0.405 |
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| 2013 |
Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS. Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. Plos Genetics. 9: e1003753. PMID 24039600 DOI: 10.1371/Journal.Pgen.1003753 |
0.794 |
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| 2013 |
Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome Biology. 14: R86. PMID 23972280 DOI: 10.1186/Gb-2013-14-8-R86 |
0.808 |
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| 2013 |
Slattery M, White KP. Enhanced dissection of the regulatory genome. Nature Methods. 10: 710-2. PMID 23900252 DOI: 10.1038/nmeth.2577 |
0.35 |
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| 2013 |
Zou Z, Saha TT, Roy S, Shin SW, Backman TW, Girke T, White KP, Raikhel AS. Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression. Proceedings of the National Academy of Sciences of the United States of America. 110: E2173-81. PMID 23633570 DOI: 10.1073/Pnas.1305293110 |
0.41 |
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| 2013 |
Bissonnette ML, Kocherginsky M, Tretiakova M, Jimenez RE, Barkan GA, Mehta V, Sirintrapun SJ, Steinberg GD, White KP, Stricker T, Paner GP. The different morphologies of urachal adenocarcinoma do not discriminate genomically by micro-RNA expression profiling. Human Pathology. 44: 1605-11. PMID 23528864 DOI: 10.1016/J.Humpath.2013.01.008 |
0.308 |
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| 2013 |
Oh H, Slattery M, Ma L, Crofts A, White KP, Mann RS, Irvine KD. Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes. Cell Reports. 3: 309-18. PMID 23395637 DOI: 10.1016/J.Celrep.2013.01.008 |
0.767 |
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| 2013 |
Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A comprehensive nuclear receptor network for breast cancer cells. Cell Reports. 3: 538-51. PMID 23375374 DOI: 10.1016/J.Celrep.2013.01.004 |
0.794 |
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| 2013 |
Jiang ZF, Xia F, Johnson KW, Brown CD, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Comparison of the genome sequences of "Candidatus Portiera aleyrodidarum" primary endosymbionts of the whitefly Bemisia tabaci B and Q biotypes. Applied and Environmental Microbiology. 79: 1757-9. PMID 23315735 DOI: 10.1128/AEM.02976-12 |
0.358 |
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| 2013 |
McNerney ME, Brown CD, Wang X, Bartom ET, Karmakar S, Bandlamudi C, Yu S, Ko J, Sandall BP, Stricker T, Anastasi J, Grossman RL, Cunningham JM, Le Beau MM, White KP. CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia. Blood. 121: 975-83. PMID 23212519 DOI: 10.1182/Blood-2012-04-426965 |
0.615 |
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| 2013 |
Webber JL, Zhang J, Cote L, Vivekanand P, Ni X, Zhou J, Nègre N, Carthew RW, White KP, Rebay I. The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan. Genetics. 193: 633-49. PMID 23172856 DOI: 10.1534/Genetics.112.146647 |
0.664 |
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| 2012 |
Acharya P, Negre N, Johnston J, Wei Y, White KP, Henry RW, Arnosti DN. Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein. G3 (Bethesda, Md.). 2: 1459-72. PMID 23173097 DOI: 10.1534/G3.112.004424 |
0.732 |
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| 2012 |
Jiang ZF, Xia F, Johnson KW, Bartom E, Tuteja JH, Stevens R, Grossman RL, Brumin M, White KP, Ghanim M. Genome sequences of the primary endosymbiont "Candidatus Portiera aleyrodidarum" in the whitefly Bemisia tabaci B and Q biotypes. Journal of Bacteriology. 194: 6678-9. PMID 23144417 DOI: 10.1128/JB.01841-12 |
0.319 |
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| 2012 |
Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. Plos Biology. 10: e1001420. PMID 23139640 DOI: 10.1371/Journal.Pbio.1001420 |
0.78 |
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| 2012 |
White K, Loscalzo J, Chan SY. Holding our breath: The emerging and anticipated roles of microRNA in pulmonary hypertension. Pulmonary Circulation. 2: 278-90. PMID 23130098 DOI: 10.4103/2045-8932.101395 |
0.319 |
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| 2012 |
Slattery M, Nègre N, White KP. Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster. Briefings in Functional Genomics. 11: 336-46. PMID 23023663 DOI: 10.1093/bfgp/els034 |
0.739 |
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| 2012 |
Hekman KE, Yu GY, Brown CD, Zhu H, Du X, Gervin K, Undlien DE, Peterson A, Stevanin G, Clark HB, Pulst SM, Bird TD, White KP, Gomez CM. A conserved eEF2 coding variant in SCA26 leads to loss of translational fidelity and increased susceptibility to proteostatic insult. Human Molecular Genetics. 21: 5472-83. PMID 23001565 DOI: 10.1093/Hmg/Dds392 |
0.35 |
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| 2012 |
Marin EC, Dry KE, Alaimo DR, Rudd KT, Cillo AR, Clenshaw ME, Negre N, White KP, Truman JW. Ultrabithorax confers spatial identity in a context-specific manner in the Drosophila postembryonic ventral nervous system. Neural Development. 7: 31. PMID 22967828 DOI: 10.1186/1749-8104-7-31 |
0.661 |
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| 2012 |
Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... White KP, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/Gr.136184.111 |
0.617 |
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| 2012 |
Nagaraj R, Gururaja-Rao S, Jones KT, Slattery M, Negre N, Braas D, Christofk H, White KP, Mann R, Banerjee U. Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway. Genes & Development. 26: 2027-37. PMID 22925885 DOI: 10.1101/gad.183061.111 |
0.726 |
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| 2012 |
Chen S, Spletter M, Ni X, White KP, Luo L, Long M. Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Reports. 1: 118-32. PMID 22832161 DOI: 10.1016/J.Celrep.2011.12.010 |
0.594 |
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| 2012 |
Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. The Embo Journal. 31: 2798-809. PMID 22543869 DOI: 10.1038/Emboj.2012.108 |
0.658 |
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| 2012 |
Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/Nmeth.1985 |
0.708 |
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| 2012 |
Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE. The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression. Plos Genetics. 8: e1002596. PMID 22479195 DOI: 10.1371/Journal.Pgen.1002596 |
0.716 |
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| 2012 |
Doré LC, Chlon TM, Brown CD, White KP, Crispino JD. Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis. Blood. 119: 3724-33. PMID 22383799 DOI: 10.1182/Blood-2011-09-380634 |
0.478 |
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| 2012 |
Grossman RL, White KP. A vision for a biomedical cloud. Journal of Internal Medicine. 271: 122-30. PMID 22142244 DOI: 10.1111/j.1365-2796.2011.02491.x |
0.302 |
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| 2012 |
Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR. Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics (Oxford, England). 28: 206-13. PMID 22084256 DOI: 10.1093/Bioinformatics/Btr628 |
0.476 |
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| 2012 |
Seiwert TY, Keck MK, Zuo Z, Khattri A, Brown C, Stricker T, Rieke D, Lingen MW, Cohen EEW, White KP, Vokes EE. Genomic profiling of a clinically annotated cohort of locoregionally advanced head and neck cancers (HNC) treated with definitive chemoradiotherapy. Journal of Clinical Oncology. 30: 5517-5517. DOI: 10.1200/Jco.2012.30.15_Suppl.5517 |
0.403 |
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| 2012 |
McNerney ME, Brown CD, Wang X, Karmakar S, Bandlamudi C, Yu S, Anastasi J, Beau MML, White K. Abstract LB-411: RNA sequencing reveals CUX1 to be a conserved tumor suppressor in acute myeloid leukemia associated with loss or deletion of chromosome 7 Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-411 |
0.59 |
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| 2012 |
Liu Y, Zhou J, White KP. Abstract 4935: A quantitative model to study cell-type-specific transcriptional regulation between MCF-7 and LNCaP Cancer Research. 72: 4935-4935. DOI: 10.1158/1538-7445.Am2012-4935 |
0.706 |
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| 2012 |
Stark AL, Hause RJ, Gorsic LK, Antao NN, Chung SH, Gill DF, White KP, Jones RB, Dolan ME. Abstract 1880: Incorporating protein levels with genetic variation and gene expression in sensitivity to chemotherapy Cancer Research. 72: 1880-1880. DOI: 10.1158/1538-7445.Am2012-1880 |
0.38 |
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| 2011 |
Ludwig MZ, Manu, Kittler R, White KP, Kreitman M. Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. Plos Genetics. 7: e1002364. PMID 22102826 DOI: 10.1371/journal.pgen.1002364 |
0.626 |
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| 2011 |
Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, Victorsen A, White KP, Kellis M. Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome Research. 21: 2096-113. PMID 21994247 DOI: 10.1101/Gr.119974.110 |
0.813 |
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| 2011 |
Tao Y, Ruan J, Yeh SH, Lu X, Wang Y, Zhai W, Cai J, Ling S, Gong Q, Chong Z, Qu Z, Li Q, Liu J, Yang J, Zheng C, ... ... White KP, et al. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. Proceedings of the National Academy of Sciences of the United States of America. 108: 12042-7. PMID 21730188 DOI: 10.1073/Pnas.1108715108 |
0.502 |
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| 2011 |
Wang Y, Wu W, Negre NN, White KP, Li C, Shah PK. Determinants of antigenicity and specificity in immune response for protein sequences. Bmc Bioinformatics. 12: 251. PMID 21693021 DOI: 10.1186/1471-2105-12-251 |
0.667 |
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| 2011 |
Quan J, Saaem I, Tang N, Ma S, Negre N, Gong H, White KP, Tian J. Parallel on-chip gene synthesis and application to optimization of protein expression. Nature Biotechnology. 29: 449-52. PMID 21516083 DOI: 10.1038/Nbt.1847 |
0.702 |
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| 2011 |
Slattery M, Ma L, Négre N, White KP, Mann RS. Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila. Plos One. 6: e14686. PMID 21483663 DOI: 10.1371/Journal.Pone.0014686 |
0.809 |
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| 2011 |
Wang X, White KP. Large-scale genetic epistasis networks using RNAi. Nature Methods. 8: 299-301. PMID 21451517 DOI: 10.1038/Nmeth0411-299 |
0.543 |
|
| 2011 |
Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, ... ... White KP, et al. A cis-regulatory map of the Drosophila genome. Nature. 471: 527-31. PMID 21430782 DOI: 10.1038/Nature09990 |
0.826 |
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| 2011 |
Godley LA, Cunningham J, Dolan ME, Huang RS, Gurbuxani S, McNerney ME, Larson RA, Leong H, Lussier Y, Onel K, Odenike O, Stock W, White KP, Le Beau MM. An integrated genomic approach to the assessment and treatment of acute myeloid leukemia. Seminars in Oncology. 38: 215-24. PMID 21421111 DOI: 10.1053/J.Seminoncol.2011.01.003 |
0.396 |
|
| 2011 |
Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis. Bmc Genomics. 12: 134. PMID 21356108 DOI: 10.1186/1471-2164-12-134 |
0.704 |
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| 2011 |
Al-Dhaheri M, Wu J, Skliris GP, Li J, Higashimato K, Wang Y, White KP, Lambert P, Zhu Y, Murphy L, Xu W. CARM1 is an important determinant of ERα-dependent breast cancer cell differentiation and proliferation in breast cancer cells. Cancer Research. 71: 2118-28. PMID 21282336 DOI: 10.1158/0008-5472.Can-10-2426 |
0.337 |
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| 2010 |
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... White KP, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374 |
0.826 |
|
| 2010 |
Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. Plos Genetics. 6: e1000814. PMID 20084099 DOI: 10.1371/Journal.Pgen.1000814 |
0.45 |
|
| 2010 |
McNerney ME, Brown CD, White KP. Next-Generation Sequencing Analysis of 23 Therapy-Related Acute Myeloid Leukemia Transcriptomes Blood. 116: 850-850. DOI: 10.1182/Blood.V116.21.850.850 |
0.313 |
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| 2010 |
Braegelmann J, Stricker T, Brown C, Dinali ME, Zou X, Vokes E, White K, Seiwert T. 255 Transcriptome sequencing of upper aerodigestive tract cancer cell lines to reveal potential therapeutic targets European Journal of Cancer Supplements. 8: 84. DOI: 10.1016/S1359-6349(10)71961-3 |
0.302 |
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| 2009 |
Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL. Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. Bioinformatics (Oxford, England). 25: 3001-4. PMID 19656951 DOI: 10.1093/bioinformatics/btp469 |
0.754 |
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| 2009 |
Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell. 137: 1259-71. PMID 19563758 DOI: 10.1016/J.Cell.2009.04.043 |
0.761 |
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| 2009 |
Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927A |
0.503 |
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| 2009 |
Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, Bellen HJ, Hoskins RA. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nature Methods. 6: 431-4. PMID 19465919 DOI: 10.1038/Nmeth.1331 |
0.79 |
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| 2009 |
Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li TR, Boutros M, White KP. Genomic mapping of binding regions for the Ecdysone receptor protein complex. Genome Research. 19: 1006-13. PMID 19237466 DOI: 10.1101/Gr.081349.108 |
0.811 |
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| 2009 |
Liu J, Ghanim M, Xue L, Brown CD, Iossifov I, Angeletti C, Hua S, Nègre N, Ludwig M, Stricker T, Al-Ahmadie HA, Tretiakova M, Camp RL, Perera-Alberto M, Rimm DL, ... ... White KP, et al. Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer. Science (New York, N.Y.). 323: 1218-22. PMID 19164706 DOI: 10.1126/Science.1157669 |
0.792 |
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| 2009 |
Neretti N, Wang PY, Brodsky AS, Nyguyen HH, White KP, Rogina B, Helfand SL. Long-lived Indy induces reduced mitochondrial reactive oxygen species production and oxidative damage. Proceedings of the National Academy of Sciences of the United States of America. 106: 2277-82. PMID 19164521 DOI: 10.1073/Pnas.0812484106 |
0.586 |
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| 2009 |
Dinali ME, Braegelmann J, Stricker T, Brown C, Salgia R, Vokes E, White K, Seiwert T. Abstract A207: Whole transcriptome profiling in upper aerodigestive tract cancers Molecular Cancer Therapeutics. 8. DOI: 10.1158/1535-7163.Targ-09-A207 |
0.407 |
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| 2008 |
Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. Plos Genetics. 4: e1000221. PMID 18927626 DOI: 10.1371/journal.pgen.1000221 |
0.356 |
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| 2008 |
Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Molecular Biology and Evolution. 25: 2269-77. PMID 18755761 DOI: 10.1093/Molbev/Msn189 |
0.371 |
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| 2008 |
Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Molecular Systems Biology. 4: 188. PMID 18414489 DOI: 10.1038/Msb.2008.25 |
0.763 |
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| 2008 |
Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... White KP, et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nature Methods. 5: 409-15. PMID 18391959 DOI: 10.1038/Nmeth.1199 |
0.743 |
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| 2008 |
Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/J.Gene.2007.10.012 |
0.388 |
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| 2008 |
Poser I, Sarov M, Hutchins JRA, Hériché J, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, ... ... White KP, et al. Erratum: Corrigendum: BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals Nature Methods. 5: 748-748. DOI: 10.1038/Nmeth0808-748B |
0.704 |
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| 2007 |
Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/Msb4100112 |
0.451 |
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| 2006 |
Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 103: 12027-32. PMID 16880385 DOI: 10.1073/Pnas.0605003103 |
0.485 |
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| 2006 |
Halasz G, van Batenburg MF, Perusse J, Hua S, Lu XJ, White KP, Bussemaker HJ. Detecting transcriptionally active regions using genomic tiling arrays. Genome Biology. 7: R59. PMID 16859498 DOI: 10.1186/Gb-2006-7-7-R59 |
0.784 |
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| 2006 |
Nègre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G. Chromosomal distribution of PcG proteins during Drosophila development. Plos Biology. 4: e170. PMID 16613483 DOI: 10.1371/journal.pbio.0040170 |
0.773 |
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| 2006 |
Gilad Y, Oshlack A, Smyth GK, Speed TP, White KP. Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature. 440: 242-5. PMID 16525476 DOI: 10.1038/nature04559 |
0.409 |
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| 2005 |
Rifkin SA, Houle D, Kim J, White KP. A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression. Nature. 438: 220-3. PMID 16281035 DOI: 10.1038/Nature04114 |
0.766 |
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| 2005 |
Meister S, Kanzok SM, Zheng XL, Luna C, Li TR, Hoa NT, Clayton JR, White KP, Kafatos FC, Christophides GK, Zheng L. Immune signaling pathways regulating bacterial and malaria parasite infection of the mosquito Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 11420-5. PMID 16076953 DOI: 10.1073/pnas.0504950102 |
0.306 |
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| 2005 |
Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Research. 15: 674-80. PMID 15867429 DOI: 10.1101/Gr.3335705 |
0.7 |
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| 2005 |
Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, ... ... White KP, et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Research. 15: 1-18. PMID 15632085 DOI: 10.1101/Gr.3059305 |
0.773 |
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| 2005 |
Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin S, Chang J, Zhang H, White K, Williams K, Schultz M. A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies. Journal of the American Medical Informatics Association : Jamia. 12: 90-8. PMID 15492032 DOI: 10.1197/Jamia.M1571 |
0.659 |
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| 2004 |
Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (New York, N.Y.). 306: 655-60. PMID 15499012 DOI: 10.1126/Science.1101312 |
0.805 |
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| 2004 |
Gu Z, Rifkin SA, White KP, Li WH. Duplicate genes increase gene expression diversity within and between species. Nature Genetics. 36: 577-9. PMID 15122255 DOI: 10.1038/Ng1355 |
0.678 |
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| 2003 |
Field HA, White KP. Developments in developmental genomics. Genome Biology. 4: 345. PMID 14611654 DOI: 10.1186/Gb-2003-4-11-345 |
0.353 |
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| 2003 |
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, ... ... White KP, et al. A protein interaction map of Drosophila melanogaster. Science (New York, N.Y.). 302: 1727-36. PMID 14605208 DOI: 10.1126/Science.1090289 |
0.313 |
|
| 2003 |
Sun LV, Chen L, Greil F, Negre N, Li TR, Cavalli G, Zhao H, Van Steensel B, White KP. Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 100: 9428-33. PMID 12876199 DOI: 10.1073/pnas.1533393100 |
0.753 |
|
| 2003 |
Li TR, White KP. Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Developmental Cell. 5: 59-72. PMID 12852852 DOI: 10.1016/S1534-5807(03)00192-8 |
0.428 |
|
| 2003 |
Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ. Analysis of the eye developmental pathway in Drosophila using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 100: 4024-9. PMID 12655063 DOI: 10.1073/pnas.0630561100 |
0.396 |
|
| 2003 |
Rifkin SA, Kim J, White KP. Evolution of gene expression in the Drosophila melanogaster subgroup. Nature Genetics. 33: 138-44. PMID 12548287 DOI: 10.1038/Ng1086 |
0.79 |
|
| 2002 |
Cheung KH, Hager J, Nelson K, White K, Li Y, Snyder M, Williams K, Miller P. A dynamic approach to mapping coordinates between microplates and microarrays. Journal of Biomedical Informatics. 35: 306-12. PMID 12968779 DOI: 10.1016/S1532-0464(03)00033-9 |
0.433 |
|
| 2002 |
Cheung KH, White K, Hager J, Gerstein M, Reinke V, Nelson K, Masiar P, Srivastava R, Li Y, Li J, Zhao H, Li J, Allison DB, Snyder M, Miller P, et al. YMD: a microarray database for large-scale gene expression analysis. Proceedings / Amia ... Annual Symposium. Amia Symposium. 140-4. PMID 12463803 |
0.422 |
|
| 2002 |
Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/Science.1072152 |
0.65 |
|
| 2002 |
Reinke V, White KP. Developmental genomic approaches in model organisms. Annual Review of Genomics and Human Genetics. 3: 153-78. PMID 12142361 DOI: 10.1146/Annurev.Genom.3.031302.100922 |
0.397 |
|
| 2002 |
Dimopoulos G, Christophides GK, Meister S, Schultz J, White KP, Barillas-Mury C, Kafatos FC. Genome expression analysis of Anopheles gambiae: responses to injury, bacterial challenge, and malaria infection. Proceedings of the National Academy of Sciences of the United States of America. 99: 8814-9. PMID 12077297 DOI: 10.1073/Pnas.092274999 |
0.378 |
|
| 2002 |
Toma DP, White KP, Hirsch J, Greenspan RJ. Identification of genes involved in Drosophila melanogaster geotaxis, a complex behavioral trait. Nature Genetics. 31: 349-53. PMID 12042820 DOI: 10.1038/Ng893 |
0.345 |
|
| 2001 |
Jin W, Riley RM, Wolfinger RD, White KP, Passador-Gurgel G, Gibson G. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genetics. 29: 389-95. PMID 11726925 DOI: 10.1038/ng766 |
0.545 |
|
| 2001 |
Furlong EE, Andersen EC, Null B, White KP, Scott MP. Patterns of gene expression during Drosophila mesoderm development. Science (New York, N.Y.). 293: 1629-33. PMID 11486054 DOI: 10.1126/Science.1062660 |
0.372 |
|
| 2001 |
White KP. Functional genomics and the study of development, variation and evolution Nature Reviews Genetics. 2: 528-537. PMID 11433359 DOI: 10.1038/35080565 |
0.334 |
|
| 2000 |
Teeter K, Naeemuddin M, Gasperini R, Zimmerman E, White KP, Hoskins R, Gibson G. Haplotype dimorphism in a SNP collection from Drosophila melanogaster. The Journal of Experimental Zoology. 288: 63-75. PMID 10750054 DOI: 10.1002/(Sici)1097-010X(20000415)288:1<63::Aid-Jez7>3.0.Co;2-1 |
0.543 |
|
| 1999 |
White KP, Rifkin SA, Hurban P, Hogness DS. Microarray analysis of Drosophila development during metamorphosis. Science (New York, N.Y.). 286: 2179-84. PMID 10591654 DOI: 10.1126/Science.286.5447.2179 |
0.802 |
|
| 1997 |
White KP, Hurban P, Watanabe T, Hogness DS. Coordination of Drosophila metamorphosis by two ecdysone-induced nuclear receptors. Science (New York, N.Y.). 276: 114-7. PMID 9082981 DOI: 10.1126/science.276.5309.114 |
0.625 |
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