Pawel Michalak - Publications

Virginia Bioinformatics Institute, Blacksburg, VA, United States 

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pinzari CA, Kang L, Michalak P, Jermiin LS, Price DK, Bonaccorso FJ. Analysis of genotype sequence data reveals the origin and evolutionary separation of Hawaiian hoary bat populations. Genome Biology and Evolution. PMID 32853363 DOI: 10.1093/gbe/evaa137  0.44
2020 Budnick JA, Sheehan LM, Benton AH, Pitzer JE, Kang L, Michalak P, Roop RM, Caswell CC. Characterizing the transport and utilization of the neurotransmitter GABA in the bacterial pathogen Brucella abortus. Plos One. 15: e0237371. PMID 32845904 DOI: 10.1371/journal.pone.0237371  0.44
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Michalak P, et al. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32811988 DOI: 10.1038/s41586-020-2661-6  0.44
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Michalak P, et al. The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32760000 DOI: 10.1038/s41586-020-2561-9  0.44
2019 van Hoek ML, Prickett MD, Settlage RE, Kang L, Michalak P, Vliet KA, Bishop BM. The Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clusters. Bmc Genomics. 20: 684. PMID 31470795 DOI: 10.1186/s12864-019-6029-y  0.44
2019 Aggarwal DD, Rybnikov S, Cohen I, Frenkel Z, Rashkovetsky E, Michalak P, Korol AB. Desiccation-induced changes in recombination rate and crossover interference in Drosophila melanogaster: evidence for fitness-dependent plasticity. Genetica. PMID 31240599 DOI: 10.1007/s10709-019-00070-6  0.68
2019 Kang L, Rashkovetsky E, Michalak K, Garner HR, Mahaney JE, Rzigalinski BA, Korol A, Nevo E, Michalak P. Genomic divergence and adaptive convergence in from Evolution Canyon, Israel. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127048 DOI: 10.1073/pnas.1720938116  0.68
2018 Velmurugan KR, Michalak P, Kang L, Fonville NC, Garner HR. Dysfunctional DNA repair pathway via defective FANCD2 gene engenders multifarious exomic and transcriptomic effects in Fanconi anemia. Molecular Genetics & Genomic Medicine. PMID 30450770 DOI: 10.1002/mgg3.502  0.44
2018 Michalak P, Kang L. Unique divergence of the breast cancer 2 () gene in Neanderthals. Hereditas. 155: 34. PMID 30410429 DOI: 10.1186/s41065-018-0073-5  0.44
2018 Michalak P, Kang L, Schou MF, Garner HR, Loeschcke V. Genomic signatures of experimental adaptive radiation in Drosophila. Molecular Ecology. PMID 30375065 DOI: 10.1111/mec.14917  0.44
2018 Kinney N, Titus-Glover K, Wren JD, Varghese RT, Michalak P, Liao H, Anandakrishnan R, Pulenthiran A, Kang L, Garner HR. CAGm: a repository of germline microsatellite variations in the 1000 genomes project. Nucleic Acids Research. PMID 30329086 DOI: 10.1093/nar/gky969  0.44
2018 Budnick JA, Sheehan LM, Kang L, Michalak P, Caswell CC. Characterization of three small proteins in linked to fucose utilization. Journal of Bacteriology. PMID 29967118 DOI: 10.1128/JB.00127-18  0.44
2017 Yablonovitch AL, Fu J, Li K, Mahato S, Kang L, Rashkovetsky E, Korol AB, Tang H, Michalak P, Zelhof AC, Nevo E, Li JB. Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates. Nature Communications. 8: 1570. PMID 29146998 DOI: 10.1038/s41467-017-01658-2  0.68
2017 Kang L, George P, Price DK, Sharakhov I, Michalak P. Mapping Genomic Scaffolds to Chromosomes Using Laser Capture Microdissection in Application to Hawaiian Picture-Winged Drosophila. Cytogenetic and Genome Research. 152: 204-212. PMID 29130948 DOI: 10.1159/000481790  0.44
2017 Kang L, Garner HR, Price DK, Michalak P. A Test for Gene Flow among Sympatric and Allopatric Hawaiian Picture-Winged Drosophila. Journal of Molecular Evolution. PMID 28492967 DOI: 10.1007/s00239-017-9795-7  0.44
2017 Michalak P, Kang L, Sarup PM, Schou MF, Loeschcke V. Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster. Bmc Genomics. 18: 84. PMID 28088192 DOI: 10.1186/s12864-017-3485-0  0.44
2016 Velotta JP, Wegrzyn JL, Ginzburg S, Kang L, Czesny S, O'Neill RJ, McCormick SD, Michalak P, Schultz ET. Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife. Molecular Ecology. PMID 28012221 DOI: 10.1111/mec.13983  0.44
2016 Maciak S, Michalak K, Kale SD, Michalak P. Nucleolar Dominance and Repression of 45S Ribosomal RNA Genes in Hybrids between Xenopus borealis and X. muelleri (2n = 36). Cytogenetic and Genome Research. PMID 27728911 DOI: 10.1159/000450665  0.48
2016 Kang L, Settlage R, McMahon W, Michalak K, Tae H, Garner HR, Stacy E, Price DK, Michalak P. Genomic Signatures of Speciation in Sympatric and Allopatric Hawaiian Picture-winged Drosophila. Genome Biology and Evolution. PMID 27189993 DOI: 10.1093/gbe/evw095  0.48
2016 Kang L, Aggarwal DD, Rashkovetsky E, Korol AB, Michalak P. Rapid genomic changes in Drosophila melanogaster adapting to desiccation stress in an experimental evolution system. Bmc Genomics. 17: 233. PMID 26979755 DOI: 10.1186/s12864-016-2556-y  1
2015 Michalak K, Maciak S, Kim YB, Santopietro G, Oh JH, Kang L, Garner HR, Michalak P. Nucleolar dominance and maternal control of 45S rDNA expression. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26645200 DOI: 10.1098/rspb.2015.2201  1
2015 Aggarwal DD, Rashkovetsky E, Michalak P, Cohen I, Ronin Y, Zhou D, Haddad GG, Korol AB. Experimental evolution of recombination and crossover interference in Drosophila caused by directional selection for stress-related traits. Bmc Biology. 13: 101. PMID 26614097 DOI: 10.1186/s12915-015-0206-5  1
2015 Philipson CW, Bassaganya-Riera J, Viladomiu M, Kronsteiner B, Abedi V, Hoops S, Michalak P, Kang L, Girardin SE, Hontecillas R. Modeling the Regulatory Mechanisms by Which NLRX1 Modulates Innate Immune Responses to Helicobacter pylori Infection. Plos One. 10: e0137839. PMID 26367386 DOI: 10.1371/journal.pone.0137839  1
2015 Maciak S, Michalak P. Cell size and cancer: a new solution to Peto's paradox? Evolutionary Applications. 8: 2-8. PMID 25667599 DOI: 10.1111/eva.12228  1
2015 Keane M, Semeiks J, Webb AE, Li YI, Quesada V, Craig T, Madsen LB, van Dam S, Brawand D, Marques PI, Michalak P, Kang L, Bhak J, Yim HS, Grishin NV, et al. Insights into the evolution of longevity from the bowhead whale genome. Cell Reports. 10: 112-22. PMID 25565328 DOI: 10.1016/j.celrep.2014.12.008  0.44
2015 Kang L, Michalak P. The evolution of cancer-related genes in hominoids. Journal of Molecular Evolution. 80: 37-41. PMID 25249249 DOI: 10.1007/s00239-014-9649-5  1
2015 Rashkovetsky E, Frenkel Z, Michalak P, Korol A. Sympatric differentiation and speciation: Insights from drosophila studies Evolutionary Biology: Biodiversification From Genotype to Phenotype. 107-140. DOI: 10.1007/978-3-319-19932-0_7  1
2014 Mechkarska M, Coquet L, Leprince J, Jouenne T, Vaudry H, Michalak K, Michalak P, Conlon JM. Host-defense peptides from skin secretions of the octoploid frogs Xenopus vestitus and Xenopus wittei (Pipidae): insights into evolutionary relationships. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 11: 20-8. PMID 25086320 DOI: 10.1016/j.cbd.2014.07.002  1
2014 Kim YB, Oh JH, McIver LJ, Rashkovetsky E, Michalak K, Garner HR, Kang L, Nevo E, Korol AB, Michalak P. Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel. Proceedings of the National Academy of Sciences of the United States of America. 111: 10630-5. PMID 25006263 DOI: 10.1073/pnas.1410372111  1
2014 Dittmar WJ, McIver L, Michalak P, Garner HR, Valdez G. EvoCor: a platform for predicting functionally related genes using phylogenetic and expression profiles. Nucleic Acids Research. 42: W72-5. PMID 24848012 DOI: 10.1093/nar/gku442  1
2014 Michalak K, Czesny S, Epifanio J, Snyder RJ, Schultz ET, Velotta JP, McCormick SD, Brown BL, Santopietro G, Michalak P. Beta-thymosin gene polymorphism associated with freshwater invasiveness of alewife (Alosa pseudoharengus). Journal of Experimental Zoology. Part a, Ecological Genetics and Physiology. 321: 233-40. PMID 24482425 DOI: 10.1002/jez.1854  1
2014 Michalak P. Evidence for maternal imprinting of 45S ribosomal RNA genes in Xenopus hybrids. Development Genes and Evolution. 224: 125-8. PMID 24477594 DOI: 10.1007/s00427-014-0464-1  1
2013 Bavarva JH, Tae H, Michalak P, Garner HR. Life cycle of an n-globin pseudogene microsatellite locus. Frontiers in Genetics. 4: 267. PMID 24363661 DOI: 10.3389/fgene.2013.00267  1
2013 Hübner S, Rashkovetsky E, Kim YB, Oh JH, Michalak K, Weiner D, Korol AB, Nevo E, Michalak P. Genome differentiation of Drosophila melanogaster from a microclimate contrast in Evolution Canyon, Israel. Proceedings of the National Academy of Sciences of the United States of America. 110: 21059-64. PMID 24324170 DOI: 10.1073/pnas.1321533111  1
2013 Michalak P. Speciation: Natural processes, genetics and biodiversity Speciation: Natural Processes, Genetics and Biodiversity. 1-264.  1
2013 Michalak P. Preface Speciation: Natural Processes, Genetics and Biodiversity. vii-ix.  1
2012 Viladomiu M, Hontecillas R, Pedragosa M, Carbo A, Hoops S, Michalak P, Michalak K, Guerrant RL, Roche JK, Warren CA, Bassaganya-Riera J. Modeling the role of peroxisome proliferator-activated receptor γ and microRNA-146 in mucosal immune responses to Clostridium difficile. Plos One. 7: e47525. PMID 23071818 DOI: 10.1371/journal.pone.0047525  1
2012 Mechkarska M, Meetani M, Michalak P, Vaksman Z, Takada K, Conlon JM. Hybridization between the African clawed frogs Xenopus laevis and Xenopus muelleri (Pipidae) increases the multiplicity of antimicrobial peptides in skin secretions of female offspring. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 7: 285-91. PMID 22687652 DOI: 10.1016/j.cbd.2012.05.002  1
2012 Czesny S, Epifanio J, Michalak P. Genetic divergence between freshwater and marine morphs of alewife (Alosa pseudoharengus): a 'next-generation' sequencing analysis. Plos One. 7: e31803. PMID 22438868 DOI: 10.1371/journal.pone.0031803  1
2011 Madison-Villar MJ, Michalak P. Misexpression of testicular microRNA in sterile Xenopus hybrids points to tetrapod-specific microRNAs associated with male fertility. Journal of Molecular Evolution. 73: 316-24. PMID 22207500 DOI: 10.1007/s00239-011-9478-8  1
2011 Ma D, Michalak P. Ephemeral association between gene CG5762 and hybrid male sterility in Drosophila sibling species. Journal of Molecular Evolution. 73: 181-7. PMID 22052252 DOI: 10.1007/s00239-011-9466-z  1
2011 Koroma AP, Jones R, Michalak P. Snapshot of DNA methylation changes associated with hybridization in Xenopus. Physiological Genomics. 43: 1276-80. PMID 21914783 DOI: 10.1152/physiolgenomics.00110.2011  1
2010 Michalak P. An eruption of mobile elements in genomes of hybrid sunflowers. Heredity. 104: 329-30. PMID 20068587 DOI: 10.1038/hdy.2009.187  1
2010 Ma D, Smith D, Zheng Z, Michalak P. Sensory components of behavioral isolation between Zimbabwe and cosmopolitan Drosophila melanogaster Israel Journal of Ecology and Evolution. 56: 197-206. DOI: 10.1560/IJEE.56.2.197  1
2009 Michalak P. Epigenetic, transposon and small RNA determinants of hybrid dysfunctions. Heredity. 102: 45-50. PMID 18545265 DOI: 10.1038/hdy.2008.48  1
2008 Michalak P, Ma D. The acylphosphatase (Acyp) alleles associate with male hybrid sterility in Drosophila. Gene. 416: 61-5. PMID 18440166 DOI: 10.1016/j.gene.2008.03.006  1
2008 Malone JH, Michalak P. Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri. Bmc Evolutionary Biology. 8: 82. PMID 18331635 DOI: 10.1186/1471-2148-8-82  1
2008 Malone JH, Michalak P. Physiological sex predicts hybrid sterility regardless of genotype. Science (New York, N.Y.). 319: 59. PMID 18174434 DOI: 10.1126/science.1148231  1
2008 Michalak P. Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics. 91: 243-8. PMID 18082363 DOI: 10.1016/j.ygeno.2007.11.002  1
2008 Michalak P, Malone JH. Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids. Genomics. 91: 158-64. PMID 18079091 DOI: 10.1016/j.ygeno.2007.10.013  1
2007 Malone JH, Chrzanowski TH, Michalak P. Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri. Plos One. 2: e781. PMID 17712429 DOI: 10.1371/journal.pone.0000781  1
2007 Michalak P, Malone JH, Lee IT, Hoshino D, Ma D. Gene expression polymorphism in Drosophila populations. Molecular Ecology. 16: 1179-89. PMID 17391405 DOI: 10.1111/j.1365-294X.2007.03201.x  1
2006 Michalak P. RNA world - the dark matter of evolutionary genomics. Journal of Evolutionary Biology. 19: 1768-74. PMID 17040373 DOI: 10.1111/j.1420-9101.2006.01141.x  1
2006 Malone JH, Hawkins DL, Michalak P. Sex-biased gene expression in a ZW sex determination system. Journal of Molecular Evolution. 63: 427-36. PMID 17024524 DOI: 10.1007/s00239-005-0263-4  1
2006 Rashkovetsky E, Iliadi K, Michalak P, Lupu A, Nevo E, Feder ME, Korol A. Adaptive differentiation of thermotolerance in Drosophila along a microclimatic gradient. Heredity. 96: 353-9. PMID 16552433 DOI: 10.1038/sj.hdy.6800784  1
2006 Kim YB, Gao J, Michalak P. A new maximum-relevance criterion for significant gene selection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4146: 71-80.  1
2004 Michalak P, Noor MA. Association of misexpression with sterility in hybrids of Drosophila simulansand D. mauritiana. Journal of Molecular Evolution. 59: 277-82. PMID 15486701 DOI: 10.1007/s00239-004-2622-y  1
2003 Noor MA, Michalak P, Donze D. Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D. persimilis. Genetics. 165: 1823-30. PMID 14704168  1
2003 Michalak P, Noor MA. Genome-wide patterns of expression in Drosophila pure species and hybrid males. Molecular Biology and Evolution. 20: 1070-6. PMID 12777520 DOI: 10.1093/molbev/msg119  1
2003 Lerman DN, Michalak P, Helin AB, Bettencourt BR, Feder ME. Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements. Molecular Biology and Evolution. 20: 135-44. PMID 12519916 DOI: 10.1093/molbev/msg015  1
2001 Michalak P, Minkov I, Helin A, Lerman DN, Bettencourt BR, Feder ME, Korol AB, Nevo E. Genetic evidence for adaptation-driven incipient speciation of Drosophila melanogaster along a microclimatic contrast in "Evolution Canyon," Israel. Proceedings of the National Academy of Sciences of the United States of America. 98: 13195-200. PMID 11687637 DOI: 10.1073/pnas.231478298  1
2000 Korol A, Rashkovetsky E, Iliadi K, Michalak P, Ronin Y, Nevo E. Nonrandom mating in Drosophila melanogaster laboratory populations derived from closely adjacent ecologically contrasting slopes at "Evolution Canyon". Proceedings of the National Academy of Sciences of the United States of America. 97: 12637-42. PMID 11050149 DOI: 10.1073/pnas.220041397  1
1999 Sørensen JG, Michalak P, Justesen J, Loeschcke V. Expression of the heat-shock protein HSP70 in Drosophila buzzatii lines selected for thermal resistance. Hereditas. 131: 155-64. PMID 10680297  1
1999 Michalak P, Rafiński J. Sexual isolation between two newt species, Triturus vulgaris and T. montandoni (Amphibia, Urodela, Salamandridae) Biological Journal of the Linnean Society. 67: 343-352. DOI: 10.1006/bijl.1998.0306  1
1998 Dahlgaard J, Loeschcke V, Michalak P, Justesen J. Induced thermotolerance and associated expression of the heat-shock protein Hsp70 in adult Drosophila melanogaster Functional Ecology. 12: 786-793. DOI: 10.1046/j.1365-2435.1998.00246.x  1
1997 Loeschcke V, Krebs RA, Dahlgaard J, Michalak P. High-temperature stress and the evolution of thermal resistance in Drosophila. Exs. 83: 175-90. PMID 9342849  1
1997 Michalak P, Grzesik J, Rafiński J. Tests for sexual incompatibility between two newt species, Triturus vulgaris and Triturus montandoni: No-choice mating design Evolution. 51: 2045-2050.  1
1996 Michalak P. Repeatability of mating behaviour in Montandon's newt, Triturus montandoni (Caudata Salamandridae) Ethology Ecology and Evolution. 8: 19-27.  1
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