Doris Bachtrog - Publications

University of California, Berkeley, CA, United States 

74/88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wei KH, Chan C, Bachtrog D. Establishment of H3K9me3-dependent heterochromatin during embryogenesis in . Elife. 10. PMID 34128466 DOI: 10.7554/eLife.55612  0.64
2020 Wei KH, Gibilisco L, Bachtrog D. Epigenetic conflict on a degenerating Y chromosome increases mutational burden in Drosophila males. Nature Communications. 11: 5537. PMID 33139741 DOI: 10.1038/s41467-020-19134-9  0.64
2020 Wei KH, Mantha A, Bachtrog D. The theory and applications of measuring broad-range and chromosome-wide recombination rate from allele frequency decay around a selected locus. Molecular Biology and Evolution. PMID 32658965 DOI: 10.1093/molbev/msaa171  0.64
2019 Wei KH, Bachtrog D. Ancestral male recombination in Drosophila albomicans produced geographically restricted neo-Y chromosome haplotypes varying in age and onset of decay. Plos Genetics. 15: e1008502. PMID 31738748 DOI: 10.1371/journal.pgen.1008502  0.64
2019 Bachtrog D, Mahajan S, Bracewell R. Massive gene amplification on a recently formed Drosophila Y chromosome. Nature Ecology & Evolution. 3: 1587-1597. PMID 31666742 DOI: 10.1038/s41559-019-1009-9  0.56
2018 Mahajan S, Wei KH, Nalley MJ, Gibilisco L, Bachtrog D. De novo assembly of a young Drosophila Y chromosome using single-molecule sequencing and chromatin conformation capture. Plos Biology. 16: e2006348. PMID 30059545 DOI: 10.1371/journal.pbio.2006348  0.64
2017 Mahajan S, Bachtrog D. Convergent evolution of Y chromosome gene content in flies. Nature Communications. 8: 785. PMID 28978907 DOI: 10.1038/s41467-017-00653-x  0.56
2016 Gibilisco L, Zhou Q, Mahajan S, Bachtrog D. Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages. Plos Genetics. 12: e1006464. PMID 27935948 DOI: 10.1371/Journal.Pgen.1006464  1
2015 Assis R, Bachtrog D. Rapid divergence and diversification of mammalian duplicate gene functions. Bmc Evolutionary Biology. 15: 138. PMID 26173681 DOI: 10.1186/s12862-015-0426-x  1
2015 Zhou Q, Bachtrog D. Ancestral Chromatin Configuration Constrains Chromatin Evolution on Differentiating Sex Chromosomes in Drosophila. Plos Genetics. 11: e1005331. PMID 26114585 DOI: 10.1371/Journal.Pgen.1005331  1
2015 Vicoso B, Bachtrog D. Numerous transitions of sex chromosomes in Diptera. Plos Biology. 13: e1002078. PMID 25879221 DOI: 10.1371/journal.pbio.1002078  1
2015 Ellison CE, Bachtrog D. Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements. Elife. 4. PMID 25688566 DOI: 10.7554/Elife.05899  1
2015 Mahajan S, Bachtrog D. Partial dosage compensation in strepsiptera, a sister group of beetles. Genome Biology and Evolution. 7: 591-600. PMID 25601100 DOI: 10.1093/gbe/evv008  1
2015 Ellison CE, Bachtrog D. Author response: Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements Elife. DOI: 10.7554/Elife.05899.013  0.32
2014 Zhou Q, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, Zhang G. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science (New York, N.Y.). 346: 1246338. PMID 25504727 DOI: 10.1126/Science.1246338  1
2014 Bachtrog D. Signs of genomic battles in mouse sex chromosomes. Cell. 159: 716-8. PMID 25417148 DOI: 10.1016/j.cell.2014.10.036  1
2014 Boussau B, Walton Z, Delgado JA, Collantes F, Beani L, Stewart IJ, Cameron SA, Whitfield JB, Johnston JS, Holland PW, Bachtrog D, Kathirithamby J, Huelsenbeck JP. Strepsiptera, phylogenomics and the long branch attraction problem. Plos One. 9: e107709. PMID 25272037 DOI: 10.1371/Journal.Pone.0107709  1
2014 Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R, Perrin N, Ross L, Valenzuela N, Vamosi JC. Sex determination: why so many ways of doing it? Plos Biology. 12: e1001899. PMID 24983465 DOI: 10.1371/Journal.Pbio.1001899  1
2014 Brown EJ, Bachtrog D. The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes. Genome Research. 24: 1125-37. PMID 24840603 DOI: 10.1101/gr.172155.114  1
2014 Kaiser VB, Bachtrog D. De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda. Bmc Genomics. 15: 241. PMID 24673816 DOI: 10.1186/1471-2164-15-241  1
2014 Lott SE, Villalta JE, Zhou Q, Bachtrog D, Eisen MB. Sex-specific embryonic gene expression in species with newly evolved sex chromosomes. Plos Genetics. 10: e1004159. PMID 24550743 DOI: 10.1371/Journal.Pgen.1004159  1
2014 Ashman TL, Bachtrog D, Blackmon H, Goldberg EE, Hahn MW, Kirkpatrick M, Kitano J, Mank JE, Mayrose I, Ming R, Otto SP, Peichel CL, Pennell MW, Perrin N, Ross L, et al. Tree of Sex: A database of sexual systems Scientific Data. 1. DOI: 10.1038/Sdata.2014.15  1
2013 Zhou Q, Ellison CE, Kaiser VB, Alekseyenko AA, Gorchakov AA, Bachtrog D. The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation. Plos Biology. 11: e1001711. PMID 24265597 DOI: 10.1371/Journal.Pbio.1001711  1
2013 Ellison CE, Bachtrog D. Dosage compensation via transposable element mediated rewiring of a regulatory network. Science (New York, N.Y.). 342: 846-50. PMID 24233721 DOI: 10.1126/Science.1239552  1
2013 Assis R, Bachtrog D. Neofunctionalization of young duplicate genes in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 17409-14. PMID 24101476 DOI: 10.1073/pnas.1313759110  1
2013 Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D. Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. Plos Biology. 11: e1001643. PMID 24015111 DOI: 10.1371/Journal.Pbio.1001643  1
2013 Vicoso B, Bachtrog D. Reversal of an ancient sex chromosome to an autosome in Drosophila. Nature. 499: 332-5. PMID 23792562 DOI: 10.1038/nature12235  1
2013 Husnik F, Nikoh N, Koga R, Ross L, Duncan RP, Fujie M, Tanaka M, Satoh N, Bachtrog D, Wilson AC, von Dohlen CD, Fukatsu T, McCutcheon JP. Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell. 153: 1567-78. PMID 23791183 DOI: 10.1016/J.Cell.2013.05.040  1
2013 Alekseyenko AA, Ellison CE, Gorchakov AA, Zhou Q, Kaiser VB, Toda N, Walton Z, Peng S, Park PJ, Bachtrog D, Kuroda MI. Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes & Development. 27: 853-8. PMID 23630075 DOI: 10.1101/Gad.215426.113  1
2013 Vicoso B, Kaiser VB, Bachtrog D. Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution. Proceedings of the National Academy of Sciences of the United States of America. 110: 6453-8. PMID 23547111 DOI: 10.1073/pnas.1217027110  1
2013 Bachtrog D. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nature Reviews. Genetics. 14: 113-24. PMID 23329112 DOI: 10.1038/nrg3366  1
2012 Assis R, Zhou Q, Bachtrog D. Sex-biased transcriptome evolution in Drosophila. Genome Biology and Evolution. 4: 1189-200. PMID 23097318 DOI: 10.1093/Gbe/Evs093  1
2012 Zhou Q, Bachtrog D. Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science (New York, N.Y.). 337: 341-5. PMID 22822149 DOI: 10.1126/Science.1225385  1
2012 Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, ... Bachtrog D, et al. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. Bmc Genomics. 13: 109. PMID 22439699 DOI: 10.1186/1471-2164-13-109  1
2012 Zhou Q, Bachtrog D. Chromosome-wide gene silencing initiates Y degeneration in Drosophila. Current Biology : Cb. 22: 522-5. PMID 22365853 DOI: 10.1016/J.Cub.2012.01.057  1
2011 Kaiser VB, Zhou Q, Bachtrog D. Nonrandom gene loss from the Drosophila miranda neo-Y chromosome. Genome Biology and Evolution. 3: 1329-37. PMID 21987387 DOI: 10.1093/Gbe/Evr103  1
2011 Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, Rice W, Valenzuela N. Are all sex chromosomes created equal? Trends in Genetics : Tig. 27: 350-7. PMID 21962970 DOI: 10.1016/J.Tig.2011.05.005  1
2011 Bachtrog D. Plant sex chromosomes: a non-degenerated Y? Current Biology : Cb. 21: R685-8. PMID 21959153 DOI: 10.1016/j.cub.2011.08.027  1
2011 Jensen JD, Bachtrog D. Characterizing the influence of effective population size on the rate of adaptation: Gillespie's Darwin domain. Genome Biology and Evolution. 3: 687-701. PMID 21705473 DOI: 10.1093/Gbe/Evr063  1
2011 Callahan B, Neher RA, Bachtrog D, Andolfatto P, Shraiman BI. Correlated evolution of nearby residues in Drosophilid proteins. Plos Genetics. 7: e1001315. PMID 21383965 DOI: 10.1371/Journal.Pgen.1001315  1
2011 Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3: 230-5. PMID 21317157 DOI: 10.1093/gbe/evr010  1
2011 Andolfatto P, Wong KM, Bachtrog D. Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biology and Evolution. 3: 114-28. PMID 21173424 DOI: 10.1093/Gbe/Evq086  1
2010 Kaiser VB, Bachtrog D. Evolution of sex chromosomes in insects. Annual Review of Genetics. 44: 91-112. PMID 21047257 DOI: 10.1146/annurev-genet-102209-163600  1
2010 Bachtrog D, Toda NR, Lockton S. Dosage compensation and demasculinization of X chromosomes in Drosophila. Current Biology : Cb. 20: 1476-81. PMID 20705467 DOI: 10.1016/J.Cub.2010.06.076  1
2010 Jensen JD, Bachtrog D. Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura. Genome Biology and Evolution. 2: 371-8. PMID 20624741 DOI: 10.1093/Gbe/Evq028  1
2009 Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 17: 585-602. PMID 19626444 DOI: 10.1007/s10577-009-9053-y  1
2009 Bachtrog D, Jensen JD, Zhang Z. Accelerated adaptive evolution on a newly formed X chromosome. Plos Biology. 7: e82. PMID 19402745 DOI: 10.1371/Journal.Pbio.1000082  1
2008 Bachtrog D. Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes. Bmc Evolutionary Biology. 8: 334. PMID 19091130 DOI: 10.1186/1471-2148-8-334  1
2008 Gurbich TA, Bachtrog D. Gene content evolution on the X chromosome. Current Opinion in Genetics & Development. 18: 493-8. PMID 18929654 DOI: 10.1016/j.gde.2008.09.006  1
2008 Bachtrog D. Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila. Genetics. 180: 1123-9. PMID 18780755 DOI: 10.1534/genetics.107.084244  1
2008 Bachtrog D. The temporal dynamics of processes underlying Y chromosome degeneration. Genetics. 179: 1513-25. PMID 18562655 DOI: 10.1534/genetics.107.084012  1
2008 Haddrill PR, Bachtrog D, Andolfatto P. Positive and negative selection on noncoding DNA in Drosophila simulans. Molecular Biology and Evolution. 25: 1825-34. PMID 18515263 DOI: 10.1093/Molbev/Msn125  1
2008 Bachtrog D, Hom E, Wong KM, Maside X, de Jong P. Genomic degradation of a young Y chromosome in Drosophila miranda. Genome Biology. 9: R30. PMID 18269752 DOI: 10.1186/gb-2008-9-2-r30  1
2008 Bachtrog D. Evidence for male-driven evolution in Drosophila. Molecular Biology and Evolution. 25: 617-9. PMID 18234707 DOI: 10.1093/molbev/msn020  1
2007 Bachtrog D. Reduced selection for codon usage bias in Drosophila miranda. Journal of Molecular Evolution. 64: 586-90. PMID 17457633 DOI: 10.1007/s00239-006-0257-x  1
2006 Bachtrog D. A dynamic view of sex chromosome evolution. Current Opinion in Genetics & Development. 16: 578-85. PMID 17055249 DOI: 10.1016/j.gde.2006.10.007  1
2006 Bachtrog D, Andolfatto P. Selection, recombination and demographic history in Drosophila miranda. Genetics. 174: 2045-59. PMID 17028331 DOI: 10.1534/Genetics.106.062760  1
2006 Bachtrog D. The speciation history of the Drosophila nasuta complex. Genetical Research. 88: 13-26. PMID 17014741 DOI: 10.1017/S0016672306008330  1
2006 Bachtrog D. Expression profile of a degenerating neo-y chromosome in Drosophila. Current Biology : Cb. 16: 1694-9. PMID 16950105 DOI: 10.1016/j.cub.2006.07.053  1
2006 Bachtrog D, Thornton K, Clark A, Andolfatto P. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution; International Journal of Organic Evolution. 60: 292-302. PMID 16610321 DOI: 10.1111/J.0014-3820.2006.Tb01107.X  1
2006 Thornton K, Bachtrog D, Andolfatto P. X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Research. 16: 498-504. PMID 16520459 DOI: 10.1101/Gr.4447906  1
2005 Bachtrog D. Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila. Genome Research. 15: 1393-401. PMID 16169921 DOI: 10.1101/gr.3543605  1
2004 Bachtrog D, Gordo I. Adaptive evolution of asexual populations under Muller's ratchet. Evolution; International Journal of Organic Evolution. 58: 1403-13. PMID 15341144 DOI: 10.1111/J.0014-3820.2004.Tb01722.X  1
2004 Bachtrog D. Evidence that positive selection drives Y-chromosome degeneration in Drosophila miranda. Nature Genetics. 36: 518-22. PMID 15107853 DOI: 10.1038/ng1347  1
2003 Bachtrog D. Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda. Genetics. 165: 1221-32. PMID 14668377  1
2003 Yi S, Bachtrog D, Charlesworth B. A survey of chromosomal and nucleotide sequence variation in Drosophila miranda. Genetics. 164: 1369-81. PMID 12930746  1
2003 Bachtrog D, Charlesworth B. On the genomic location of the exuperantia1 gene in Drosophila miranda: the limits of in situ hybridization experiments. Genetics. 164: 1237-40. PMID 12871928  1
2003 Bachtrog D. Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila. Nature Genetics. 34: 215-9. PMID 12754509 DOI: 10.1038/ng1164  1
2003 Bachtrog D. Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda. Molecular Biology and Evolution. 20: 173-81. PMID 12598683 DOI: 10.1093/molbev/msg035  1
2002 Bachtrog D, Charlesworth B. Reduced adaptation of a non-recombining neo-Y chromosome. Nature. 416: 323-6. PMID 11907578 DOI: 10.1038/416323a  1
2001 Bachtrog D, Charlesworth B. Towards a complete sequence of the human Y chromosome. Genome Biology. 2: REVIEWS1016. PMID 11387042 DOI: 10.1186/Gb-2001-2-5-Reviews1016  1
2000 Bachtrog D, Charlesworth B. Reduced levels of microsatellite variability on the neo-Y chromosome of Drosophila miranda. Current Biology : Cb. 10: 1025-31. PMID 10996069 DOI: 10.1016/S0960-9822(00)00656-4  1
2000 Bachtrog D, Agis M, Imhof M, Schlötterer C. Microsatellite variability differs between dinucleotide repeat motifs-evidence from Drosophila melanogaster. Molecular Biology and Evolution. 17: 1277-85. PMID 10958844 DOI: 10.1093/Oxfordjournals.Molbev.A026411  1
1999 Bachtrog D, Weiss S, Zangerl B, Brem G, Schlötterer C. Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome. Molecular Biology and Evolution. 16: 602-10. PMID 10335653 DOI: 10.1093/Oxfordjournals.Molbev.A026142  1
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2019 Mai D, Nalley MJ, Bachtrog D. Patterns of genomic differentiation in the Drosophila nasuta species complex. Molecular Biology and Evolution. PMID 31556453 DOI: 10.1093/molbev/msz215  0.28
2019 Bracewell R, Chatla K, Nalley MJ, Bachtrog D. Dynamic turnover of centromeres drives karyotype evolution in Drosophila. Elife. 8. PMID 31524597 DOI: 10.7554/eLife.49002  0.28
2019 Bracewell R, Chatla K, Nalley MJ, Bachtrog D. Author response: Dynamic turnover of centromeres drives karyotype evolution in Drosophila Elife. DOI: 10.7554/Elife.49002.055  0.28
2017 Wong Miller KM, Bracewell RR, Eisen MB, Bachtrog D. Patterns of genome-wide diversity and population structure in the Drosophila athabasca species complex. Molecular Biology and Evolution. PMID 28431021 DOI: 10.1093/molbev/msx134  0.16
2021 Nguyen AH, Bachtrog D. Toxic Y chromosome: Increased repeat expression and age-associated heterochromatin loss in male Drosophila with a young Y chromosome. Plos Genetics. 17: e1009438. PMID 33886541 DOI: 10.1371/journal.pgen.1009438  0.12
2021 Muyle A, Bachtrog D, Marais GAB, Turner JMA. Epigenetics drive the evolution of sex chromosomes in animals and plants. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200124. PMID 33866802 DOI: 10.1098/rstb.2020.0124  0.08
2020 Brown EJ, Nguyen AH, Bachtrog D. The Y chromosome may contribute to sex-specific ageing in Drosophila. Nature Ecology & Evolution. PMID 32313175 DOI: 10.1038/s41559-020-1179-5  0.08
2020 Brown EJ, Nguyen AH, Bachtrog D. The Drosophila Y chromosome affects heterochromatin integrity genome-wide. Molecular Biology and Evolution. PMID 32211857 DOI: 10.1093/molbev/msaa082  0.08
2020 Bracewell R, Bachtrog D. Complex evolutionary history of the Y chromosome in flies of the Drosophila obscura species group. Genome Biology and Evolution. PMID 32176296 DOI: 10.1093/gbe/evaa051  0.04
2020 Bracewell R, Tran A, Chatla K, Bachtrog D. Chromosome-Level Assembly of Reveals Important Karyotypic Transition of the X Chromosome. G3 (Bethesda, Md.). PMID 31969429 DOI: 10.1534/g3.119.400922  0.04
2019 Ellison C, Bachtrog D. Recurrent gene co-amplification on Drosophila X and Y chromosomes. Plos Genetics. 15: e1008251. PMID 31329593 DOI: 10.1371/Journal.Pgen.1008251  0.04
2019 Ellison C, Bachtrog D. Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila. Plos Biology. 17: e3000094. PMID 30742611 DOI: 10.1371/Journal.Pbio.3000094  0.04
2016 Blackmon H, Ross L, Bachtrog D. Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects. The Journal of Heredity. PMID 27543823 DOI: 10.1093/Jhered/Esw047  0.04
2020 Bachtrog D. The Y Chromosome as a Battleground for Intragenomic Conflict. Trends in Genetics : Tig. PMID 32448494 DOI: 10.1016/j.tig.2020.04.008  0.01
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