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Guillaume Marcais, Ph.D. - Publications

Affiliations: 
2011 Applied Mathematics and Scientific Computation University of Maryland, College Park, College Park, MD 
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Marçais G, DeBlasio D, Kingsford C. Sketching methods with small window guarantee using minimum decycling sets. Arxiv. PMID 37986724  0.372
2023 Zheng H, Marçais G, Kingsford C. Creating and Using Minimizer Sketches in Computational Genomics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 37646787 DOI: 10.1089/cmb.2023.0094  0.552
2023 Mongia M, Shen C, Davoodi AG, Marçais G, Mohimani H. Large scale sequence alignment via efficient inference in generative models. Scientific Reports. 13: 7285. PMID 37142645 DOI: 10.1038/s41598-023-34257-x  0.526
2021 Zheng H, Kingsford C, Marçais G. Sequence-specific minimizers via polar sets. Bioinformatics (Oxford, England). 37: i187-i195. PMID 34252928 DOI: 10.1093/bioinformatics/btab313  0.509
2021 Frisby TS, Baker SJ, Marçais G, Hoang QM, Kingsford C, Langmead CJ. HARVESTMAN: a framework for hierarchical feature learning and selection from whole genome sequencing data. Bmc Bioinformatics. 22: 174. PMID 33794760 DOI: 10.1186/s12859-021-04096-6  0.343
2019 Marçais G, DeBlasio D, Pandey P, Kingsford C. Locality-sensitive hashing for the edit distance. Bioinformatics (Oxford, England). 35: i127-i135. PMID 31510667 DOI: 10.1093/Bioinformatics/Btz354  0.496
2019 Marçais G, Solomon B, Patro R, Kingsford C. Sketching and Sublinear Data Structures in Genomics Annual Review of Biomedical Data Science. 2: 93-118. DOI: 10.1146/ANNUREV-BIODATASCI-072018-021156  0.355
2018 Marçais G, Delcher AL, Phillippy AM, Coston R, Salzberg SL, Zimin A. MUMmer4: A fast and versatile genome alignment system. Plos Computational Biology. 14: e1005944. PMID 29373581 DOI: 10.1371/Journal.Pcbi.1005944  0.677
2017 Orenstein Y, Pellow D, Marçais G, Shamir R, Kingsford C. Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. Plos Computational Biology. 13: e1005777. PMID 28968408 DOI: 10.1371/Journal.Pcbi.1005777  0.493
2017 Marçais G, Pellow D, Bork D, Orenstein Y, Shamir R, Kingsford C. Improving the performance of minimizers and winnowing schemes. Bioinformatics (Oxford, England). 33: i110-i117. PMID 28881970 DOI: 10.1093/Bioinformatics/Btx235  0.43
2017 Zimin AV, Puiu D, Luo MC, Zhu T, Koren S, Marcais G, Yorke JA, Dvorak J, Salzberg SL. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm. Genome Research. PMID 28130360 DOI: 10.1101/Gr.213405.116  0.692
2016 Stevens KA, Wegrzyn J, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeaz D, Koriabine M, Holtz-Morris A, Martinez-Garcia P, Sezen U, Marcais G, Jermstad K, McGuire P, et al. Sequence of the Sugar Pine Megagenome. Genetics. PMID 27794028 DOI: 10.1534/Genetics.116.193227  0.656
2015 Marçais G, Yorke JA, Zimin A. QuorUM: An Error Corrector for Illumina Reads. Plos One. 10: e0130821. PMID 26083032 DOI: 10.1371/Journal.Pone.0130821  0.615
2014 Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marçais G, Roberts M, Ferguson B, Fox HS, et al. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biology Direct. 9: 20. PMID 25319552 DOI: 10.1186/1745-6150-9-20  0.68
2012 Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research. 22: 557-67. PMID 22147368 DOI: 10.1101/Gr.131383.111  0.689
2011 Marçais G, Kingsford C. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics (Oxford, England). 27: 764-70. PMID 21217122 DOI: 10.1093/Bioinformatics/Btr011  0.598
2010 Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Marcais G, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475  0.677
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