Richard JM Harrison - Related publications

2008-2011 University of Edinburgh, Edinburgh, Scotland, United Kingdom 
 2011-2016 East Malling Research 
 2016- Genetics, Genomics and Breeding NIAB EMR 
Population genetics, Plant-microbe interactions, comparative genomics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Carlier J, Bonnot F, Roussel V, Ravel S, Martinez RT, Perez-Vicente L, Abadie C, Wright S. Convergent Adaptation to Quantitative Host Resistance in a Major Plant Pathogen. Mbio. 12. PMID 33622734 DOI: 10.1128/mBio.03129-20   
2021 Cui Y, Wu B, Peng A, Song X, Chen X. The Genome of Banana Leaf Blight Pathogen str. FS66 Harbors Widespread Gene Transfer From . Frontiers in Plant Science. 12: 629859. PMID 33613610 DOI: 10.3389/fpls.2021.629859   
2021 Wang W, Peng D, Baptista RP, Li Y, Kissinger JC, Tarleton RL. Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease. Plos Pathogens. 17: e1009254. PMID 33508020 DOI: 10.1371/journal.ppat.1009254   
2021 Myers KN, Conn D, Brown AMV. Essential Amino Acid Enrichment and Positive Selection Highlight Endosymbiont's Role in a Global Virus-Vectoring Pest. Msystems. 6. PMID 33531407 DOI: 10.1128/mSystems.01048-20   
2021 Seabolt MH, Konstantinidis KT, Roellig DM. Hidden Diversity within Common Protozoan Parasites Revealed by a Novel Genomotyping Scheme. Applied and Environmental Microbiology. PMID 33397705 DOI: 10.1128/AEM.02275-20   
2021 Concha C, Miranda CD, Rojas R, Godoy FA, Romero J. Characterization of a Novel Variant of the Quinolone-Resistance Gene () Carried by a Multi-Drug Resistant Strain Isolated from Farmed Salmon in Chile. Antibiotics (Basel, Switzerland). 10. PMID 33652626 DOI: 10.3390/antibiotics10030236   
2021 Demissie ZA, Robinson KA, Loewen MC. Draft genome resources for the plant-beneficial fungi strains ACM941 and 88-710. Molecular Plant-Microbe Interactions : Mpmi. PMID 33404260 DOI: 10.1094/MPMI-10-20-0294-A   
2021 Kranjc N, Crisanti A, Nolan T, Bernardini F. Genome Conservation as a Resource for Rational Gene Drive Target Site Selection. Insects. 12. PMID 33498790 DOI: 10.3390/insects12020097   
2021 Zhang P, Diao J, Xie G, Ma L, Wang L. A Complete Genome Sequence of the Wood Stem Endophyte BY6 Strain Possessing Plant Growth-Promoting and Antifungal Activities. Biomed Research International. 2021: 3904120. PMID 33604372 DOI: 10.1155/2021/3904120   
2021 Allen JP, Snitkin E, Pincus NB, Hauser AR. Forest and Trees: Exploring Bacterial Virulence with Genome-wide Association Studies and Machine Learning. Trends in Microbiology. PMID 33455849 DOI: 10.1016/j.tim.2020.12.002   
2021 Hua Z. Diverse Evolution in 111 Plant Genomes Reveals Purifying and Dosage Balancing Selection Models for Genes. International Journal of Molecular Sciences. 22. PMID 33467195 DOI: 10.3390/ijms22020871   
2021 Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042   
2021 Chen X, Li R, Wang Y, Li A. Genomic Characterization Provides an Insight into the Pathogenicity of the Poplar Canker Bacterium . Genes. 12. PMID 33572241 DOI: 10.3390/genes12020246   
2021 Suresh A, Shaik S, Baddam R, Ranjan A, Qumar S, Jadhav S, Semmler T, Ghazi IA, Wieler LH, Ahmed N. Evolutionary Dynamics Based on Comparative Genomics of Pathogenic Escherichia coli Lineages Harboring Polyketide Synthase () Island. Mbio. 12. PMID 33653937 DOI: 10.1128/mBio.03634-20   
2021 Mao B, Yin R, Li X, Cui S, Zhang H, Zhao J, Chen W. Comparative Genomic Analysis of Isolated from Different Niches. Genes. 12. PMID 33567604 DOI: 10.3390/genes12020241   
2021 Yin M, Zhang S, Du X, Mateo RG, Guo W, Li A, Wang Z, Wu S, Chen J, Liu J, Ren G. Genomic analysis of Medicago ruthenica provides insights into its tolerance to abiotic stress and demographic history. Molecular Ecology Resources. PMID 33615703 DOI: 10.1111/1755-0998.13363   
2021 Zhang Y, Zhang R, Deng C, Yang J, Deng G. The complete chloroplast genome sequence of (Moraceae). Mitochondrial Dna. Part B, Resources. 6: 299-301. PMID 33659654 DOI: 10.1080/23802359.2020.1863874   
2021 Öhrman C, Sahl JW, Sjödin A, Uneklint I, Ballard R, Karlsson L, McDonough RF, Sundell D, Soria K, Bäckman S, Chase K, Brindefalk B, Sozhamannan S, Vallesi A, Hägglund E, et al. Reorganized Genomic Taxonomy of Enables Design of Robust Environmental PCR Assays for Detection of . Microorganisms. 9. PMID 33440900 DOI: 10.3390/microorganisms9010146   
2021 Jaiswal SK, Mahajan S, Chakraborty A, Kumar S, Sharma VK. The genome sequence of reveals adaptive evolution of drought tolerance mechanisms. Iscience. 24: 102079. PMID 33644713 DOI: 10.1016/j.isci.2021.102079   
2021 Weigand MR, Peng Y, Pouseele H, Kania D, Bowden KE, Williams MM, Tondella ML. Genomic surveillance and improved molecular typing of using wgMLST. Journal of Clinical Microbiology. PMID 33627319 DOI: 10.1128/JCM.02726-20   
2021 Wu H, Bai W, He S, Zhao Y, Wu J. The complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 526-527. PMID 33628914 DOI: 10.1080/23802359.2021.1872451   
2021 Cho SH, Jeong Y, Lee E, Ko SR, Ahn CY, Oh HM, Cho BK, Cho S. Assessment of species diversity through pan-genome analysis with newly isolated sp. 3-20A1M. Journal of Microbiology and Biotechnology. PMID 33526758 DOI: 10.4014/jmb.2012.12054   
2021 Zhou Y, Zhang L, Fan F, Wang ZQ, Huang Y, Yin LF, Yin WX, Luo C. Genome sequence of Venturia carpophila, the causal agent of peach scab. Molecular Plant-Microbe Interactions : Mpmi. PMID 33656373 DOI: 10.1094/MPMI-11-20-0321-A   
2021 Butković A, González R, Elena SF. Revisiting Orthotospovirus phylogeny using full-genome data and testing the contribution of selection, recombination and segment reassortment in the origin of members of new species. Archives of Virology. PMID 33394171 DOI: 10.1007/s00705-020-04902-1   
2021 Conti A, Corte L, Casagrande Pierantoni D, Robert V, Cardinali G. What Is the Best Lens? Comparing the Resolution Power of Genome-Derived Markers and Standard Barcodes. Microorganisms. 9. PMID 33540579 DOI: 10.3390/microorganisms9020299   
2021 Guardiola-Avila I, Sánchez-Busó L, Acedo-Félix E, Gomez-Gil B, Zúñiga-Cabrera M, González-Candelas F, Noriega-Orozco L. Core and Accessory Genome Analysis of . Microorganisms. 9. PMID 33477474 DOI: 10.3390/microorganisms9010191   
2021 Wu PI, Ross C, Siegele DA, Hu JC. Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12. G3 (Bethesda, Md.). 11. PMID 33561236 DOI: 10.1093/g3journal/jkaa035   
2021 Zhang G, Wang H, Yin X, Kong W, Wang Q, Chen Y, Wei J, Liu J, Guo X. Characterization of the complete chloroplast genome of N. P. Balakr. (Apiaceae) and its phylogenetic implications. Mitochondrial Dna. Part B, Resources. 6: 447-449. PMID 33628883 DOI: 10.1080/23802359.2020.1870902   
2021 Cui H, Zhu Z, Lu Z, Ding Z, Zhang C, Luan F. The complete chloroplast genome sequence of the (Jacq.) Swartz. (Cucurbitaceae). Mitochondrial Dna. Part B, Resources. 6: 97-98. PMID 33490597 DOI: 10.1080/23802359.2020.1847614   
2021 Zhang Q, Zhou W, Li B, Li L, Fu M, Zhou L, Yu X, Wang D, Wang Z. Genome-Wide Analysis and the Expression Pattern of the ERF Gene Family in . Plants (Basel, Switzerland). 10. PMID 33440756 DOI: 10.3390/plants10010133   
2021 Liu J, Zheng C, Liu ZY, Niu YF. The complete chloroplast genome and phylogenetic analysis of (rambutan). Mitochondrial Dna. Part B, Resources. 6: 485-487. PMID 33628898 DOI: 10.1080/23802359.2021.1872449   
2021 Tiwari JK, Rawat S, Luthra SK, Zinta R, Sahu S, Varshney S, Kumar V, Dalamu D, Mandadi N, Kumar M, Chakrabarti SK, Rao AR, Rai A. Genome sequence analysis provides insights on genomic variation and late blight resistance genes in potato somatic hybrid (parents and progeny). Molecular Biology Reports. PMID 33442830 DOI: 10.1007/s11033-020-06106-x   
2021 Jiao PP, Jiang X, Qu WR, Zhang SH, Yang TG, Wu ZH. Complete chloroplast genome sequence of Gand. (Leguminosae). Mitochondrial Dna. Part B, Resources. 6: 335-336. PMID 33659669 DOI: 10.1080/23802359.2020.1867017   
2021 Saha O, Rakhi NN, Hoque MN, Sultana M, Hossain MA. Genome-wide genetic marker analysis and genotyping of Escherichia fergusonii strain OTSVEF-60. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. PMID 33591555 DOI: 10.1007/s42770-021-00441-2   
2021 Qu WR, Jiao PP, Jiang X, Zhang SH, Yang TG, Li ZJ, Wu ZH. Complete chloroplast genome sequence of (Leguminosae). Mitochondrial Dna. Part B, Resources. 6: 399-401. PMID 33659692 DOI: 10.1080/23802359.2020.1869618   
2021 Han F, Li J, Yuan J, Yu J. The complete chloroplast genome sequence of (Moraceae), an endemic and endangered plant in China. Mitochondrial Dna. Part B, Resources. 6: 604-605. PMID 33659705 DOI: 10.1080/23802359.2020.1861556   
2021 Colabella C, Casagrande Pierantoni D, Corte L, Roscini L, Conti A, Bassetti M, Tascini C, Robert V, Cardinali G. Single Strain High-Depth NGS Reveals High rDNA (ITS-LSU) Variability in the Four Prevalent Pathogenic Species of the Genus . Microorganisms. 9. PMID 33540602 DOI: 10.3390/microorganisms9020302   
2021 Dong S, Liu M, Liu Y, Chen F, Yang T, Chen L, Zhang X, Guo X, Fang D, Li L, Deng T, Yao Z, Lang X, Gong Y, Wu E, et al. The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids. Horticulture Research. 8: 38. PMID 33642574 DOI: 10.1038/s41438-021-00471-9   
2021 Rosselli R, La Porta N, Muresu R, Stevanato P, Concheri G, Squartini A. Pangenomics of the Symbiotic Rhizobiales. Core and Accessory Functions Across a Group Endowed with High Levels of Genomic Plasticity. Microorganisms. 9. PMID 33669391 DOI: 10.3390/microorganisms9020407   
2021 Alaklabi A, Ahamed A, Al Qthanin RN, Arif IA, Panneerselvam A, Al-Khulaidi AW. Molecular characterization of endangered endemic plant using chloroplast and plastid gene. Saudi Journal of Biological Sciences. 28: 1123-1127. PMID 33424406 DOI: 10.1016/j.sjbs.2020.11.042   
2021 Das A, Ghana P, Rudrappa B, Gandhi R, Tavva VS, Mohanty A. Genome Editing of Rice by CRISPR-Cas: End-to-End Pipeline for Crop Improvement. Methods in Molecular Biology (Clifton, N.J.). 2238: 115-134. PMID 33471328 DOI: 10.1007/978-1-0716-1068-8_8   
2021 Zhong Y, Zhang X, Shi Q, Cheng ZM. Adaptive evolution driving the young duplications in six Rosaceae species. Bmc Genomics. 22: 112. PMID 33563208 DOI: 10.1186/s12864-021-07422-7   
2021 Yan WJ, Yang TG, Qin R, Liu H. Complete chloroplast genome of (Umbelliferae). Mitochondrial Dna. Part B, Resources. 6: 536-537. PMID 33628918 DOI: 10.1080/23802359.2021.1873711   
2021 Jiang W, Ma L, Yi D, Pang Y. The complete chloroplast genome sequence of L. Mitochondrial Dna. Part B, Resources. 6: 189-190. PMID 33537439 DOI: 10.1080/23802359.2020.1860708   
2021 Liu K, Wang R, Guo XX, Zhang XJ, Qu XJ, Fan SJ. Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes in Eragrostideae (Chloridoideae, Poaceae). Plants (Basel, Switzerland). 10. PMID 33419221 DOI: 10.3390/plants10010109   
2021 Prasanth CN, Viswanathan R, Malathi P, Sundar AR. Development and characterization of genomic SSR marker for virulent strain-specific infecting sugarcane. 3 Biotech. 11: 20. PMID 33442518 DOI: 10.1007/s13205-020-02572-z   
2021 Poulsen BE. A first look at the essential genes of . Journal of Bacteriology. PMID 33468588 DOI: 10.1128/JB.00698-20   
2021 Ayaz A, Saqib S, Huang H, Zaman W, Lü S, Zhao H. Genome-wide comparative analysis of long-chain acyl-CoA synthetases (LACSs) gene family: A focus on identification, evolution and expression profiling related to lipid synthesis. Plant Physiology and Biochemistry : Ppb. 161: 1-11. PMID 33556720 DOI: 10.1016/j.plaphy.2021.01.042   
2021 Ayaz A, Saqib S, Huang H, Zaman W, Lü S, Zhao H. Genome-wide comparative analysis of long-chain acyl-CoA synthetases (LACSs) gene family: A focus on identification, evolution and expression profiling related to lipid synthesis. Plant Physiology and Biochemistry : Ppb. 161: 1-11. PMID 33556720 DOI: 10.1016/j.plaphy.2021.01.042   
2021 Ayaz A, Saqib S, Huang H, Zaman W, Lü S, Zhao H. Genome-wide comparative analysis of long-chain acyl-CoA synthetases (LACSs) gene family: A focus on identification, evolution and expression profiling related to lipid synthesis. Plant Physiology and Biochemistry : Ppb. 161: 1-11. PMID 33556720 DOI: 10.1016/j.plaphy.2021.01.042