Ilan Davis - Publications

Affiliations: 
University of Oxford, Oxford, United Kingdom 
Area:
RNA transport

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hailstone M, Waithe D, Samuels TJ, Yang L, Costello I, Arava Y, Robertson E, Parton RM, Davis I. CytoCensus, mapping cell identity and division in tissues and organs using machine learning. Elife. 9. PMID 32423529 DOI: 10.7554/eLife.51085  0.4
2020 Samuels TJ, Arava Y, Järvelin AI, Robertson F, Lee JY, Yang L, Yang CP, Lee T, Ish-Horowicz D, Davis I. Neuronal upregulation of Prospero protein is driven by alternative mRNA polyadenylation and Syncrip-mediated mRNA stabilisation. Biology Open. PMID 32205310 DOI: 10.1242/bio.049684  0.32
2019 Harrison JU, Parton RM, Davis I, Baker RE. Testing Models of mRNA Localization Reveals Robustness Regulated by Reducing Transport between Cells. Biophysical Journal. PMID 31708163 DOI: 10.1016/j.bpj.2019.10.025  0.4
2019 Žurauskas M, Dobbie IM, Parton RM, Phillips MA, Göhler A, Davis I, Booth MJ. IsoSense: frequency enhanced sensorless adaptive optics through structured illumination. Optica. 6: 370-379. PMID 31417942 DOI: 10.1364/OPTICA.6.000370  0.4
2019 Vaz F, Kounatidis I, Covas G, Parton RM, Harkiolaki M, Davis I, Filipe SR, Ligoxygakis P. Accessibility to Peptidoglycan Is Important for the Recognition of Gram-Positive Bacteria in Drosophila. Cell Reports. 27: 2480-2492.e6. PMID 31116990 DOI: 10.1016/j.celrep.2019.04.103  0.4
2018 Titlow JS, Yang L, Parton RM, Palanca A, Davis I. Erratum to: Super-Resolution Single Molecule FISH at the Drosophila Neuromuscular Junction. Methods in Molecular Biology (Clifton, N.J.). 1649: E1. PMID 29450865 DOI: 10.1007/978-1-4939-7213-5_32  0.4
2018 Titlow JS, Yang L, Parton RM, Palanca A, Davis I. Super-Resolution Single Molecule FISH at the Drosophila Neuromuscular Junction. Methods in Molecular Biology (Clifton, N.J.). 1649: 163-175. PMID 29130196 DOI: 10.1007/978-1-4939-7213-5_10  0.4
2017 Yang CP, Samuels TJ, Huang Y, Yang L, Ish-Horowicz D, Davis I, Lee T. Imp and Syp RNA-binding proteins govern decommissioning of Drosophila neural stem cells. Development (Cambridge, England). PMID 28851709 DOI: 10.1242/dev.149500  0.32
2017 Yang L, Titlow J, Ennis D, Smith C, Mitchell J, Young FL, Waddell S, Ish-Horowicz D, Davis I. Single molecule fluorescence in situ hybridisation for quantitating post-transcriptional regulation in Drosophila brains. Methods (San Diego, Calif.). PMID 28651965 DOI: 10.1016/j.ymeth.2017.06.025  0.32
2016 Misra M, Edmund H, Ennis D, Schlueter MA, Marot JE, Tambasco J, Barlow I, Sigurbjornsdottir S, Mathew R, Vallés AM, Davis I, Leptin M, Gavis ER. A Genome-Wide Screen for Dendritically Localized RNAs Identifies Genes Required for Dendrite Morphogenesis. G3 (Bethesda, Md.). PMID 27260999 DOI: 10.1534/g3.116.030353  1
2016 Järvelin AI, Noerenberg M, Davis I, Castello A. The new (dis)order in RNA regulation. Cell Communication and Signaling : Ccs. 14: 9. PMID 27048167 DOI: 10.1186/s12964-016-0132-3  1
2016 Davidson A, Parton RM, Rabouille C, Weil TT, Davis I. Localized Translation of gurken/TGF-α mRNA during Axis Specification Is Controlled by Access to Orb/CPEB on Processing Bodies. Cell Reports. PMID 26947065 DOI: 10.1016/j.celrep.2016.02.038  1
2016 Ball G, Demmerle J, Kaufmann R, Davis I, Dobbie IM, Schermelleh L. Erratum: SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy. Scientific Reports. 6: 20754. PMID 26847150 DOI: 10.1038/srep20754  0.4
2015 Ball G, Demmerle J, Kaufmann R, Davis I, Dobbie IM, Schermelleh L. SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy. Scientific Reports. 5: 15915. PMID 26525406 DOI: 10.1038/srep15915  1
2015 Johnson E, Seiradake E, Jones EY, Davis I, Grünewald K, Kaufmann R. Correlative in-resin super-resolution and electron microscopy using standard fluorescent proteins. Scientific Reports. 5: 9583. PMID 25823571 DOI: 10.1038/srep09583  1
2015 York-Andersen AH, Parton RM, Bi CJ, Bromley CL, Davis I, Weil TT. A single and rapid calcium wave at egg activation in Drosophila. Biology Open. 4: 553-60. PMID 25750438 DOI: 10.1242/bio.201411296  1
2014 Halstead JM, Lin YQ, Durraine L, Hamilton RS, Ball G, Neely GG, Bellen HJ, Davis I. Syncrip/hnRNP Q influences synaptic transmission and regulates BMP signaling at the Drosophila neuromuscular synapse. Biology Open. 3: 839-49. PMID 25171887 DOI: 10.1242/bio.20149027  1
2014 McDermott SM, Yang L, Halstead JM, Hamilton RS, Meignin C, Davis I. Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction. Rna (New York, N.Y.). 20: 1593-606. PMID 25171822 DOI: 10.1261/rna.045849.114  1
2014 Kaufmann R, Schellenberger P, Seiradake E, Dobbie IM, Jones EY, Davis I, Hagen C, Grünewald K. Super-resolution microscopy using standard fluorescent proteins in intact cells under cryo-conditions. Nano Letters. 14: 4171-5. PMID 24884378 DOI: 10.1021/nl501870p  1
2014 Parton RM, Davidson A, Davis I, Weil TT. Subcellular mRNA localisation at a glance. Journal of Cell Science. 127: 2127-33. PMID 24833669 DOI: 10.1242/jcs.114272  1
2013 McDermott SM, Davis I. Drosophila Hephaestus/polypyrimidine tract binding protein is required for dorso-ventral patterning and regulation of signalling between the germline and soma. Plos One. 8: e69978. PMID 23894566 DOI: 10.1371/journal.pone.0069978  1
2012 McDermott SM, Meignin C, Rappsilber J, Davis I. Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification. Biology Open. 1: 488-97. PMID 23213441 DOI: 10.1242/bio.2012885  1
2012 Weil TT, Parton RM, Herpers B, Soetaert J, Veenendaal T, Xanthakis D, Dobbie IM, Halstead JM, Hayashi R, Rabouille C, Davis I. Drosophila patterning is established by differential association of mRNAs with P bodies. Nature Cell Biology. 14: 1305-13. PMID 23178881 DOI: 10.1038/ncb2627  1
2012 Zhang F, Wang J, Xu J, Zhang Z, Koppetsch BS, Schultz N, Vreven T, Meignin C, Davis I, Zamore PD, Weng Z, Theurkauf WE. UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery. Cell. 151: 871-84. PMID 23141543 DOI: 10.1016/j.cell.2012.09.040  1
2012 Brown AC, Dobbie IM, Alakoskela JM, Davis I, Davis DM. Super-resolution imaging of remodeled synaptic actin reveals different synergies between NK cell receptors and integrins. Blood. 120: 3729-40. PMID 22966166 DOI: 10.1182/blood-2012-05-429977  1
2012 Weil TT, Parton RM, Davis I. Preparing individual Drosophila egg chambers for live imaging. Journal of Visualized Experiments : Jove. PMID 22395366 DOI: 10.3791/3679  1
2012 Hartswood E, Brodie J, Vendra G, Davis I, Finnegan DJ. RNA:RNA interaction can enhance RNA localization in Drosophila oocytes. Rna (New York, N.Y.). 18: 729-37. PMID 22345148 DOI: 10.1261/rna.026674.111  1
2012 Ball G, Parton RM, Hamilton RS, Davis I. A cell biologist's guide to high resolution imaging. Methods in Enzymology. 504: 29-55. PMID 22264528 DOI: 10.1016/B978-0-12-391857-4.00002-1  1
2011 Brown AC, Oddos S, Dobbie IM, Alakoskela JM, Parton RM, Eissmann P, Neil MA, Dunsby C, French PM, Davis I, Davis DM. Remodelling of cortical actin where lytic granules dock at natural killer cell immune synapses revealed by super-resolution microscopy. Plos Biology. 9: e1001152. PMID 21931537 DOI: 10.1371/journal.pbio.1001152  1
2011 Dobbie IM, King E, Parton RM, Carlton PM, Sedat JW, Swedlow JR, Davis I. OMX: a new platform for multimodal, multichannel wide-field imaging. Cold Spring Harbor Protocols. 2011: 899-909. PMID 21807861 DOI: 10.1101/pdb.top121  1
2011 Parton RM, Hamilton RS, Ball G, Yang L, Cullen CF, Lu W, Ohkura H, Davis I. A PAR-1-dependent orientation gradient of dynamic microtubules directs posterior cargo transport in the Drosophila oocyte. The Journal of Cell Biology. 194: 121-35. PMID 21746854 DOI: 10.1083/jcb.201103160  1
2011 Hamilton RS, Davis I. Identifying and searching for conserved RNA localisation signals. Methods in Molecular Biology (Clifton, N.J.). 714: 447-66. PMID 21431757 DOI: 10.1007/978-1-61779-005-8_27  1
2011 Dalgarno HI, Dalgarno PA, Dada AC, Towers CE, Gibson GJ, Parton RM, Davis I, Warburton RJ, Greenaway AH. Nanometric depth resolution from multi-focal images in microscopy. Journal of the Royal Society, Interface / the Royal Society. 8: 942-51. PMID 21247948 DOI: 10.1098/rsif.2010.0508  1
2010 Parton RM, Davis I. How the sea squirt nucleus tells mesoderm not to be endoderm. Developmental Cell. 19: 487-8. PMID 20951340 DOI: 10.1016/j.devcel.2010.10.002  1
2010 Yang L, Parton R, Ball G, Qiu Z, Greenaway AH, Davis I, Lu W. An adaptive non-local means filter for denoising live-cell images and improving particle detection. Journal of Structural Biology. 172: 233-43. PMID 20599512 DOI: 10.1016/j.jsb.2010.06.019  1
2010 Hamilton RS, Parton RM, Oliveira RA, Vendra G, Ball G, Nasmyth K, Davis I. ParticleStats: open source software for the analysis of particle motility and cytoskeletal polarity. Nucleic Acids Research. 38: W641-6. PMID 20542911 DOI: 10.1093/nar/gkq542  1
2010 Weil TT, Parton RM, Davis I. Making the message clear: visualizing mRNA localization. Trends in Cell Biology. 20: 380-90. PMID 20444605 DOI: 10.1016/j.tcb.2010.03.006  1
2010 Parton RM, Vallés AM, Dobbie IM, Davis I. Live cell imaging in Drosophila melanogaster. Cold Spring Harbor Protocols. 2010: pdb.top75. PMID 20360379 DOI: 10.1101/pdb.top75  0.4
2010 Parton RM, Vallés AM, Dobbie IM, Davis I. Drosophila larval fillet preparation and imaging of neurons. Cold Spring Harbor Protocols. 2010: pdb.prot5405. PMID 20360359 DOI: 10.1101/pdb.prot5405  1
2010 Parton RM, Vallés AM, Dobbie IM, Davis I. Drosophila macrophage preparation and screening. Cold Spring Harbor Protocols. 2010: pdb.prot5404. PMID 20360358 DOI: 10.1101/pdb.prot5404  1
2010 Parton RM, Vallés AM, Dobbie IM, Davis I. Collection and mounting of Drosophila embryos for imaging. Cold Spring Harbor Protocols. 2010: pdb.prot5403. PMID 20360357 DOI: 10.1101/pdb.prot5403  1
2010 Parton RM, Vallés AM, Dobbie IM, Davis I. Isolation of Drosophila egg chambers for imaging. Cold Spring Harbor Protocols. 2010: pdb.prot5402. PMID 20360356 DOI: 10.1101/pdb.prot5402  1
2010 Oliveira RA, Hamilton RS, Pauli A, Davis I, Nasmyth K. Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei. Nature Cell Biology. 12: 185-92. PMID 20081838 DOI: 10.1038/ncb2018  1
2010 Weil TT, Xanthakis D, Parton R, Dobbie I, Rabouille C, Gavis ER, Davis I. Distinguishing direct from indirect roles for bicoid mRNA localization factors. Development (Cambridge, England). 137: 169-76. PMID 20023172 DOI: 10.1242/dev.044867  1
2010 Meignin C, Davis I. Transmitting the message: intracellular mRNA localization. Current Opinion in Cell Biology. 22: 112-9. PMID 20022233 DOI: 10.1016/j.ceb.2009.11.011  1
2010 Yang L, Parton R, Ball G, Qiu Z, Greenaway AH, Davis I, Lu W. A 2D+t feature-preserving non-local means filter for image denoising and improved detection of small and weak particles British Machine Vision Conference, Bmvc 2010 - Proceedings. DOI: 10.5244/C.24.14  1
2009 Beckett MG, Allton CR, Davies CT, Davis I, Flynn JM, Grant EJ, Hamilton RS, Irving AC, Kenway RD, Ostrowski RH, Perry JT, Swedlow JR, Trew A. Building a scientific data grid with DiGS. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 367: 2471-81. PMID 19451103 DOI: 10.1098/rsta.2009.0050  1
2009 Hamilton RS, Hartswood E, Vendra G, Jones C, Van De Bor V, Finnegan D, Davis I. A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons. Rna (New York, N.Y.). 15: 200-7. PMID 19144907 DOI: 10.1261/rna.1264109  1
2008 Pickard BS, Knight HM, Hamilton RS, Soares DC, Walker R, Boyd JK, Machell J, Maclean A, McGhee KA, Condie A, Porteous DJ, St Clair D, Davis I, Blackwood DH, Muir WJ. A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder. Proceedings of the National Academy of Sciences of the United States of America. 105: 14940-5. PMID 18824690 DOI: 10.1073/pnas.0800643105  1
2008 Zimyanin VL, Belaya K, Pecreaux J, Gilchrist MJ, Clark A, Davis I, St Johnston D. In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization. Cell. 134: 843-53. PMID 18775316 DOI: 10.1016/j.cell.2008.06.053  1
2008 Weil TT, Parton R, Davis I, Gavis ER. Changes in bicoid mRNA anchoring highlight conserved mechanisms during the oocyte-to-embryo transition. Current Biology : Cb. 18: 1055-61. PMID 18639459 DOI: 10.1016/j.cub.2008.06.046  1
2008 Meignin C, Davis I. UAP56 RNA helicase is required for axis specification and cytoplasmic mRNA localization in Drosophila. Developmental Biology. 315: 89-98. PMID 18237727 DOI: 10.1016/j.ydbio.2007.12.004  1
2007 Meignin C, Alvarez-Garcia I, Davis I, Palacios IM. The salvador-warts-hippo pathway is required for epithelial proliferation and axis specification in Drosophila. Current Biology : Cb. 17: 1871-8. PMID 17964161 DOI: 10.1016/j.cub.2007.09.062  1
2007 Delanoue R, Herpers B, Soetaert J, Davis I, Rabouille C. Drosophila Squid/hnRNP helps Dynein switch from a gurken mRNA transport motor to an ultrastructural static anchor in sponge bodies. Developmental Cell. 13: 523-38. PMID 17925228 DOI: 10.1016/j.devcel.2007.08.022  1
2007 Vendra G, Hamilton RS, Davis I. Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos. Rna (New York, N.Y.). 13: 1860-7. PMID 17901156 DOI: 10.1261/rna.509007  1
2007 Tekotte H, Tollervey D, Davis I. Imaging the migrating border cell cluster in living Drosophila egg chambers. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 2818-24. PMID 17849456 DOI: 10.1002/dvdy.21305  1
2007 Hamilton RS, Davis I. RNA localization signals: deciphering the message with bioinformatics. Seminars in Cell & Developmental Biology. 18: 178-85. PMID 17452113 DOI: 10.1016/j.semcdb.2007.02.001  0.52
2007 Clark A, Meignin C, Davis I. A Dynein-dependent shortcut rapidly delivers axis determination transcripts into the Drosophila oocyte. Development (Cambridge, England). 134: 1955-65. PMID 17442699 DOI: 10.1242/dev.02832  1
2006 Davis I, Parton RM. Time-lapse cinematography in living Drosophila tissues: preparation of material. Csh Protocols. 2006. PMID 22485989 DOI: 10.1101/pdb.prot4602  0.4
2006 Davis I, Parton RM. Selection of appropriate imaging equipment and methodology for live cell imaging in Drosophila. Csh Protocols. 2006. PMID 22485979 DOI: 10.1101/pdb.ip21  0.4
2006 Davis I, Parton RM. Fluorescent reagents for live cell imaging and their introduction into cells. Csh Protocols. 2006. PMID 22485978 DOI: 10.1101/pdb.ip20  0.4
2006 Tekotte H, Davis I. Bruno: a double turn-off for Oskar. Developmental Cell. 10: 280-1. PMID 16516832 DOI: 10.1016/j.devcel.2006.02.001  1
2006 Parton RM, Davis I. Lifting the Fog: Image Restoration by Deconvolution Cell Biology, Four-Volume Set. 3: 187-200. DOI: 10.1016/B978-012164730-8/50147-7  1
2005 Delanoue R, Davis I. Dynein anchors its mRNA cargo after apical transport in the Drosophila blastoderm embryo. Cell. 122: 97-106. PMID 16009136 DOI: 10.1016/j.cell.2005.04.033  1
2005 Van De Bor V, Hartswood E, Jones C, Finnegan D, Davis I. gurken and the I factor retrotransposon RNAs share common localization signals and machinery. Developmental Cell. 9: 51-62. PMID 15992540 DOI: 10.1016/j.devcel.2005.04.012  1
2004 Van de Bor V, Davis I. mRNA localisation gets more complex. Current Opinion in Cell Biology. 16: 300-7. PMID 15145355 DOI: 10.1016/j.ceb.2004.03.008  1
2004 Davis I. A helicase that gets Oskar's message across. Nature Cell Biology. 6: 285-7. PMID 15057239 DOI: 10.1038/ncb0404-285  1
2003 MacDougall N, Clark A, MacDougall E, Davis I. Drosophila gurken (TGFalpha) mRNA localizes as particles that move within the oocyte in two dynein-dependent steps. Developmental Cell. 4: 307-19. PMID 12636913 DOI: 10.1016/S1534-5807(03)00058-3  1
2002 Tekotte H, Davis I. Intracellular mRNA localization: motors move messages. Trends in Genetics : Tig. 18: 636-42. PMID 12446149 DOI: 10.1016/S0168-9525(02)02819-6  1
2002 Tekotte H, Berdnik D, Török T, Buszczak M, Jones LM, Cooley L, Knoblich JA, Davis I. Dcas is required for importin-alpha3 nuclear export and mechano-sensory organ cell fate specification in Drosophila. Developmental Biology. 244: 396-406. PMID 11944946 DOI: 10.1006/dbio.2002.0612  1
2001 Kumar JP, Wilkie GS, Tekotte H, Moses K, Davis I. Perturbing nuclear transport in Drosophila eye imaginal discs causes specific cell adhesion and axon guidance defects. Developmental Biology. 240: 315-25. PMID 11784066 DOI: 10.1006/dbio.2001.0468  1
2001 Wilkie GS, Zimyanin V, Kirby R, Korey C, Francis-Lang H, Van Vactor D, Davis I. Small bristles, the Drosophila ortholog of NXF-1, is essential for mRNA export throughout development. Rna (New York, N.Y.). 7: 1781-92. PMID 11780634  1
2001 Korey CA, Wilkie G, Davis I, Van Vactor D. small bristles is required for the morphogenesis of multiple tissues during Drosophila development. Genetics. 159: 1659-70. PMID 11779805  1
2001 Wilkie GS, Davis I. Drosophila wingless and pair-rule transcripts localize apically by dynein-mediated transport of RNA particles Cell. 105: 209-219. PMID 11336671 DOI: 10.1016/S0092-8674(01)00312-9  1
2001 MacDougall N, Lad Y, Wilkie GS, Francis-Lang H, Sullivan W, Davis I. Merlin, the Drosophila homologue of neurofibromatosis-2, is specifically required in posterior follicle cells for axis formation in the oocyte Development. 128: 665-673. PMID 11171392  1
1999 Wilkie GS, Shermoen AW, O'Farrell PH, Davis I. Transcribed genes are localized according to chromosomal position within polarized Drosophila embryonic nuclei. Current Biology : Cb. 9: 1263-6. PMID 10556096  1
1997 Davis I. Nuclear polarity and nuclear trafficking in Drosophila Seminars in Cell and Developmental Biology. 8: 91-97.  1
1996 Francis-Lang H, Davis I, Ish-Horowicz D. Asymmetric localization of Drosophila pair-rule transcripts from displaced nuclei: evidence for directional nuclear export. The Embo Journal. 15: 640-9. PMID 8599947  1
1995 Davis I, Girdham CH, O'Farrell PH. A nuclear GFP that marks nuclei in living Drosophila embryos; maternal supply overcomes a delay in the appearance of zygotic fluorescence. Developmental Biology. 170: 726-9. PMID 7649398 DOI: 10.1006/dbio.1995.1251  1
1993 Davis I, Francis-Lang H, Ish-Horowicz D. Mechanisms of intracellular transcript localization and export in early Drosophila embryos. Cold Spring Harbor Symposia On Quantitative Biology. 58: 793-8. PMID 7525150  1
1991 Davis I, Ish-Horowicz D. Apical localization of pair-rule transcripts requires 3' sequences and limits protein diffusion in the Drosophila blastoderm embryo. Cell. 67: 927-40. PMID 1959136  1
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