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Eric F. Joyce - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
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50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Malachowski T, Chandradoss KR, Boya R, Zhou L, Cook AL, Su C, Pham K, Haws SA, Kim JH, Ryu HS, Ge C, Luppino JM, Nguyen SC, Titus KR, Gong W, ... ... Joyce EF, et al. Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome. Cell. 186: 5840-5858.e36. PMID 38134876 DOI: 10.1016/j.cell.2023.11.019  0.604
2023 Kotb NM, Ulukaya G, Chavan A, Nguyen SC, Proskauer L, Joyce E, Hasson D, Jagannathan M, Rangan P. Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis. Biorxiv : the Preprint Server For Biology. PMID 38014330 DOI: 10.1101/2023.11.15.567233  0.619
2023 Chavan A, Isenhart R, Nguyen SC, Kotb N, Harke J, Sintsova A, Ulukaya G, Uliana F, Ashiono C, Kutay U, Pegoraro G, Rangan P, Joyce EF, Jagannathan M. A nuclear architecture screen in identifies Stonewall as a link between chromatin position at the nuclear periphery and germline stem cell fate. Biorxiv : the Preprint Server For Biology. PMID 38014085 DOI: 10.1101/2023.11.17.567611  0.608
2023 Yu R, Roseman S, Siegenfeld AP, Nguyen SC, Joyce EF, Liau BB, Krantz ID, Alexander KA, Berger SL. CTCF/cohesin organize the ground state of chromatin-nuclear speckle association. Biorxiv : the Preprint Server For Biology. PMID 37961560 DOI: 10.1101/2023.07.22.550178  0.575
2023 Alexander KA, Yu R, Skuli N, Coffey NJ, Nguyen S, Faunce C, Huang H, Dardani IP, Good AL, Lim J, Li C, Biddle N, Joyce EF, Raj A, Lee D, et al. Nuclear speckles regulate HIF-2α programs and correlate with patient survival in kidney cancer. Biorxiv : the Preprint Server For Biology. PMID 37745397 DOI: 10.1101/2023.09.14.557228  0.55
2023 Park DS, Nguyen SC, Isenhart R, Shah PP, Kim W, Barnett RJ, Chandra A, Luppino JM, Harke J, Wai M, Walsh PJ, Abdill RJ, Yang R, Lan Y, Yoon S, ... ... Joyce EF, et al. High-throughput Oligopaint screen identifies druggable 3D genome regulators. Nature. PMID 37438531 DOI: 10.1038/s41586-023-06340-w  0.632
2023 Shah PP, Keough KC, Gjoni K, Santini GT, Abdill RJ, Wickramasinghe NM, Dundes CE, Karnay A, Chen A, Salomon REA, Walsh PJ, Nguyen SC, Whalen S, Joyce EF, Loh KM, et al. An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype. Genome Biology. 24: 16. PMID 36691074 DOI: 10.1186/s13059-023-02849-5  0.586
2022 Luppino JM, Field A, Nguyen SC, Park DS, Shah PP, Abdill RJ, Lan Y, Yunker R, Jain R, Adelman K, Joyce EF. Co-depletion of NIPBL and WAPL balance cohesin activity to correct gene misexpression. Plos Genetics. 18: e1010528. PMID 36449519 DOI: 10.1371/journal.pgen.1010528  0.578
2022 Wang W, Chandra A, Goldman N, Yoon S, Ferrari EK, Nguyen SC, Joyce EF, Vahedi G. TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors. Nature Immunology. PMID 35726060 DOI: 10.1038/s41590-022-01232-z  0.585
2021 Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, ... ... Joyce EF, et al. Publisher Correction: BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. PMID 34725478 DOI: 10.1038/s41588-021-00980-2  0.534
2021 Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, ... ... Joyce EF, et al. BRD4 orchestrates genome folding to promote neural crest differentiation. Nature Genetics. 53: 1480-1492. PMID 34611363 DOI: 10.1038/s41588-021-00934-8  0.593
2021 Alexander KA, Coté A, Nguyen SC, Zhang L, Gholamalamdari O, Agudelo-Garcia P, Lin-Shiao E, Tanim KMA, Lim J, Biddle N, Dunagin MC, Good CR, Mendoza MR, Little SC, Belmont A, ... Joyce EF, et al. p53 mediates target gene association with nuclear speckles for amplified RNA expression. Molecular Cell. PMID 33823140 DOI: 10.1016/j.molcel.2021.03.006  0.523
2020 Johnstone SE, Reyes A, Qi Y, Adriaens C, Hegazi E, Pelka K, Chen JH, Zou LS, Drier Y, Hecht V, Shoresh N, Selig MK, Lareau CA, Iyer S, Nguyen SC, ... Joyce EF, et al. Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer. Cell. PMID 32841603 DOI: 10.1016/J.Cell.2020.07.030  0.599
2020 Luppino JM, Park DS, Nguyen SC, Lan Y, Xu Z, Yunker R, Joyce EF. Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes. Nature Genetics. PMID 32572210 DOI: 10.1038/S41588-020-0647-9  0.58
2020 Ren W, Medeiros N, Warneford-Thomson R, Wulfridge P, Yan Q, Bian J, Sidoli S, Garcia BA, Skordalakes E, Joyce E, Bonasio R, Sarma K. Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function. Nature Communications. 11: 2219. PMID 32376827 DOI: 10.1038/S41467-020-15902-9  0.347
2020 Luppino JM, Joyce EF. Single cell analysis pushes the boundaries of TAD formation and function. Current Opinion in Genetics & Development. 61: 25-31. PMID 32302920 DOI: 10.1016/j.gde.2020.03.005  0.467
2020 Fasolino M, Goldman N, Wang W, Cattau B, Zhou Y, Petrovic J, Link VM, Cote A, Chandra A, Silverman M, Joyce EF, Little SC, Kaestner KH, Naji A, et al. Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression. Immunity. PMID 32049053 DOI: 10.1016/J.Immuni.2020.01.003  0.368
2019 Gozalo A, Duke A, Lan Y, Pascual-Garcia P, Talamas JA, Nguyen SC, Shah PP, Jain R, Joyce EF, Capelson M. Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression. Molecular Cell. PMID 31784359 DOI: 10.1016/J.Molcel.2019.10.017  0.62
2019 Rosin LF, Crocker O, Isenhart RL, Nguyen SC, Xu Z, Joyce EF. Chromosome territory formation attenuates the translocation potential of cells. Elife. 8. PMID 31682226 DOI: 10.7554/Elife.49553  0.668
2019 Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, et al. The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature Communications. 10: 4486. PMID 31582744 DOI: 10.1038/S41467-019-12211-8  0.801
2019 Poleshko A, Smith CL, Nguyen SC, Sivaramakrishnan P, Wong KG, Murray JI, Lakadamyali M, Joyce EF, Jain R, Epstein JA. H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis. Elife. 8. PMID 31573510 DOI: 10.7554/Elife.49278  0.65
2019 Nguyen SC, Joyce EF. Programmable Chromosome Painting with Oligopaints. Methods in Molecular Biology (Clifton, N.J.). 2038: 167-180. PMID 31407284 DOI: 10.1007/978-1-4939-9674-2_11  0.686
2019 King TD, Leonard CJ, Cooper JC, Nguyen S, Joyce EF, Phadnis N. Recurrent losses and rapid evolution of the condensin II complex in insects. Molecular Biology and Evolution. PMID 31270536 DOI: 10.1093/Molbev/Msz140  0.637
2019 Wu S, Fatkhutdinov N, Rosin L, Luppino JM, Iwasaki O, Tanizawa H, Tang HY, Kossenkov AV, Gardini A, Noma KI, Speicher DW, Joyce EF, Zhang R. ARID1A spatially partitions interphase chromosomes. Science Advances. 5: eaaw5294. PMID 31131328 DOI: 10.1126/Sciadv.Aaw5294  0.509
2019 Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, et al. Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques. Molecular Cell. PMID 30745086 DOI: 10.1016/J.Molcel.2019.01.006  0.613
2019 Rosin LF, Crocker O, Isenhart RL, Nguyen SC, Xu Z, Joyce EF. Author response: Chromosome territory formation attenuates the translocation potential of cells Elife. DOI: 10.7554/Elife.49553.013  0.647
2019 Poleshko A, Smith CL, Nguyen SC, Sivaramakrishnan P, Wong KG, Murray JI, Lakadamyali M, Joyce EF, Jain R, Epstein JA. Author response: H3K9me2 orchestrates inheritance of spatial positioning of peripheral heterochromatin through mitosis Elife. DOI: 10.7554/Elife.49278.029  0.54
2018 Ou K, Yu M, Moss NG, Wang YJ, Wang AW, Nguyen SC, Jiang C, Feleke E, Kameswaran V, Joyce EF, Naji A, Glaser B, Avrahami D, Kaestner KH. Targeted demethylation at the CDKN1C/p57 induces human β cell replication. The Journal of Clinical Investigation. PMID 30352048 DOI: 10.1172/Jci99170  0.555
2018 Rosin LF, Nguyen SC, Joyce EF. Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei. Plos Genetics. 14: e1007393. PMID 30001329 DOI: 10.1371/Journal.Pgen.1007393  0.668
2017 Joyce EF. Toward High-Throughput and Multiplexed Imaging of Genome Organization. Assay and Drug Development Technologies. 15: 11-14. PMID 28092459 DOI: 10.1089/adt.2016.770  0.443
2016 Senaratne TN, Joyce EF, Nguyen SC, Wu CT. Investigating the Interplay between Sister Chromatid Cohesion and Homolog Pairing in Drosophila Nuclei. Plos Genetics. 12: e1006169. PMID 27541002 DOI: 10.1371/Journal.Pgen.1006169  0.684
2016 Gyuricza MR, Manheimer KB, Apte V, Krishnan B, Joyce EF, McKee BD, McKim KS. Dynamic and Stable Cohesins Regulate Synaptonemal Complex Assembly and Chromosome Segregation. Current Biology : Cb. PMID 27291057 DOI: 10.1016/J.Cub.2016.05.006  0.681
2016 Joyce EF, Erceg J, Wu CT. Pairing and anti-pairing: a balancing act in the diploid genome. Current Opinion in Genetics & Development. 37: 119-128. PMID 27065367 DOI: 10.1016/j.gde.2016.03.002  0.624
2015 Beliveau BJ, Boettiger AN, Avendaño MS, Jungmann R, McCole RB, Joyce EF, Kim-Kiselak C, Bantignies F, Fonseka CY, Erceg J, Hannan MA, Hoang HG, Colognori D, Lee JT, Shih WM, et al. Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes. Nature Communications. 6: 7147. PMID 25962338 DOI: 10.1038/Ncomms8147  0.767
2013 Joyce EF, Apostolopoulos N, Beliveau BJ, Wu CT. Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development. Plos Genetics. 9: e1004013. PMID 24385920 DOI: 10.1371/journal.pgen.1004013  0.783
2013 Beliveau BJ, Joyce EF, Apostolopoulosa N, Yilmaza F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard J, Wu C. Oligopaints: highly efficient, bioinformatically designed probes for fluorescence in situ hybridization Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P5  0.782
2012 Beliveau BJ, Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT. Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes. Proceedings of the National Academy of Sciences of the United States of America. 109: 21301-6. PMID 23236188 DOI: 10.1073/Pnas.1213818110  0.777
2012 Sakaguchi A, Joyce E, Aoki T, Schedl P, Steward R. The histone H4 lysine 20 monomethyl mark, set by PR-Set7 and stabilized by L(3)mbt, is necessary for proper interphase chromatin organization. Plos One. 7: e45321. PMID 23024815 DOI: 10.1371/journal.pone.0045321  0.32
2012 Joyce EF, Williams BR, Xie T, Wu CT. Identification of genes that promote or antagonize somatic homolog pairing using a high-throughput FISH-based screen. Plos Genetics. 8: e1002667. PMID 22589731 DOI: 10.1371/journal.pgen.1002667  0.666
2012 Joyce EF, Paul A, Chen KE, Tanneti N, McKim KS. Multiple barriers to nonhomologous DNA end joining during meiosis in Drosophila. Genetics. 191: 739-46. PMID 22542963 DOI: 10.1534/genetics.112.140996  0.651
2011 Tanneti NS, Landy K, Joyce EF, McKim KS. A pathway for synapsis initiation during zygotene in Drosophila oocytes. Current Biology : Cb. 21: 1852-7. PMID 22036181 DOI: 10.1016/j.cub.2011.10.005  0.672
2011 Joyce EF, Pedersen M, Tiong S, White-Brown SK, Paul A, Campbell SD, McKim KS. Drosophila ATM and ATR have distinct activities in the regulation of meiotic DNA damage and repair. The Journal of Cell Biology. 195: 359-67. PMID 22024169 DOI: 10.1083/jcb.201104121  0.634
2011 Joyce EF, McKim KS. Meiotic checkpoints and the interchromosomal effect on crossing over in Drosophila females. Fly. 5: 134-40. PMID 21339705 DOI: 10.4161/fly.5.2.14767  0.723
2010 Orsi GA, Joyce EF, Couble P, McKim KS, Loppin B. Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation. Journal of Cell Science. 123: 3515-24. PMID 20841382 DOI: 10.1242/jcs.073890  0.677
2010 Joyce EF, McKim KS. Chromosome axis defects induce a checkpoint-mediated delay and interchromosomal effect on crossing over during Drosophila meiosis. Plos Genetics. 6. PMID 20711363 DOI: 10.1371/journal.pgen.1001059  0.722
2009 McKim KS, Joyce EF, Jang JK. Cytological analysis of meiosis in fixed Drosophila ovaries. Methods in Molecular Biology (Clifton, N.J.). 558: 197-216. PMID 19685326 DOI: 10.1007/978-1-60761-103-5_12  0.603
2009 Joyce EF, Tanneti SN, McKim KS. Drosophila hold'em is required for a subset of meiotic crossovers and interacts with the dna repair endonuclease complex subunits MEI-9 and ERCC1. Genetics. 181: 335-40. PMID 18957705 DOI: 10.1534/genetics.108.093104  0.649
2009 Joyce EF, McKim KS. Drosophila PCH2 is required for a pachytene checkpoint that monitors double-strand-break-independent events leading to meiotic crossover formation. Genetics. 181: 39-51. PMID 18957704 DOI: 10.1534/genetics.108.093112  0.698
2007 Joyce EF, McKim KS. When specialized sites are important for synapsis and the distribution of crossovers. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 217-26. PMID 17295219 DOI: 10.1002/bies.20531  0.62
1982 Lin CC, Joyce E, Biederman BM, Gerhart S. The constitutive heterochromatin of porcine chromosomes. Journal of Heredity. 73: 231-233. PMID 7096986 DOI: 10.1093/Oxfordjournals.Jhered.A109625  0.395
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