Jian Lu - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
Evolutionary and functional genomics of small RNAs

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ruan Y, Hou M, Tang X, He X, Lu X, Lu J, Wu CI, Wen H. The runaway evolution of SARS-CoV-2 leading to the highly evolved Delta strain. Molecular Biology and Evolution. PMID 35234869 DOI: 10.1093/molbev/msac046  0.39
2021 Hu B, Liu R, Tang X, Pan Y, Wang M, Tong Y, Ye G, Shen G, Ying R, Fu A, Li D, Zhao W, Peng J, Guo J, Men D, ... ... Lu J, et al. The concordance between the evolutionary trend and the clinical manifestation of the two SARS-CoV-2 variants. National Science Review. 8: nwab073. PMID 34676099 DOI: 10.1093/nsr/nwab073  0.525
2021 Ruan Y, Luo Z, Tang X, Li G, Wen H, He X, Lu X, Lu J, Wu CI. On the founder effect in COVID-19 outbreaks: how many infected travelers may have started them all? National Science Review. 8: nwaa246. PMID 34676089 DOI: 10.1093/nsr/nwaa246  0.444
2021 Wu CI, Wen H, Lu J, Su XD, Hughes AC, Zhai W, Chen C, Chen H, Li M, Song S, Qian Z, Wang Q, Chen B, Guo Z, Ruan Y, et al. On the origin of SARS-CoV-2-The blind watchmaker argument. Science China. Life Sciences. PMID 34269976 DOI: 10.1007/s11427-021-1972-1  0.378
2021 Wu CI, Wen H, Lu J, Su XD, Hughes AC, Zhai W, Chen C, Chen H, Li M, Song S, Qian Z, Wang Q, Chen B, Guo Z, Ruan Y, et al. On the origin of SARS-CoV-2-The blind watchmaker argument. Science China. Life Sciences. PMID 34269976 DOI: 10.1007/s11427-021-1972-1  0.378
2021 Zhang H, Wang Y, Wu X, Tang X, Wu C, Lu J. Author Correction: Determinants of genome-wide distribution and evolution of uORFs in eukaryotes. Nature Communications. 12: 2101. PMID 33790278 DOI: 10.1038/s41467-021-22435-2  0.596
2021 Zhang H, Wang Y, Wu X, Tang X, Wu C, Lu J. Determinants of genome-wide distribution and evolution of uORFs in eukaryotes. Nature Communications. 12: 1076. PMID 33597535 DOI: 10.1038/s41467-021-21394-y  0.649
2020 Tang X, Wu C, Li X, Song Y, Yao X, Wu X, Duan Y, Zhang H, Wang Y, Qian Z, Cui J, Lu J. On the origin and continuing evolution of SARS-CoV-2. National Science Review. 7: 1012-1023. PMID 34676127 DOI: 10.1093/nsr/nwaa036  0.625
2020 Li T, Tang X, Wu C, Yao X, Wang Y, Lu X, Lu J. The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2. Science China. Life Sciences. PMID 32621057 DOI: 10.1007/S11427-020-1764-2  0.53
2020 Luo S, Zhang H, Duan Y, Yao X, Clark AG, Lu J. The evolutionary arms race between transposable elements and piRNAs in Drosophila melanogaster. Bmc Evolutionary Biology. 20: 14. PMID 31992188 DOI: 10.1186/S12862-020-1580-3  0.473
2020 Tang X, Wu C, Li X, Song Y, Yao X, Wu X, Duan Y, Zhang H, Wang Y, Qian Z, Cui J, Lu J. On the origin and continuing evolution of SARS-CoV-2 National Science Review. 7: 1012-1023. DOI: 10.1093/Nsr/Nwaa036  0.656
2019 Wang Y, Zhang H, Lu J. Recent advances in ribosome profiling for deciphering translational regulation. Methods (San Diego, Calif.). PMID 31103613 DOI: 10.1016/J.Ymeth.2019.05.011  0.61
2019 Wang Y, Zhang H, Lu J. Response to Comment on "microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes". Molecular Biology and Evolution. PMID 31099389 DOI: 10.1093/Molbev/Msz121  0.593
2019 Wu C, Lu J. Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution. Genes. 10. PMID 31064091 DOI: 10.3390/Genes10050338  0.428
2019 Zhang H, Wang Y, Lu J. Function and Evolution of Upstream ORFs in Eukaryotes. Trends in Biochemical Sciences. PMID 31003826 DOI: 10.1016/J.Tibs.2019.03.002  0.641
2019 Dou S, Wang Y, Lu J. Metazoan tsRNAs: Biogenesis, Evolution and Regulatory Functions. Non-Coding Rna. 5. PMID 30781726 DOI: 10.3390/Ncrna5010018  0.622
2018 Zhang H, Wang Y, Li J, Chen H, He X, Zhang H, Liang H, Lu J. Biosynthetic energy cost for amino acids decreases in cancer evolution. Nature Communications. 9: 4124. PMID 30297703 DOI: 10.1038/S41467-018-06461-1  0.578
2018 Zhang H, Dou S, He F, Luo J, Wei L, Lu J. Genome-wide maps of ribosomal occupancy provide insights into adaptive evolution and regulatory roles of uORFs during Drosophila development. Plos Biology. 16: e2003903. PMID 30028832 DOI: 10.1371/Journal.Pbio.2003903  0.447
2018 Luo S, He F, Luo J, Dou S, Wang Y, Guo A, Lu J. Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response. Nucleic Acids Research. PMID 29548011 DOI: 10.1093/Nar/Gky189  0.598
2018 Luo J, Wang Y, Yuan J, Zhao Z, Lu J. MicroRNA duplication accelerates the recruitment of new targets during vertebrate evolution. Rna (New York, N.Y.). PMID 29511046 DOI: 10.1261/Rna.062752.117  0.606
2017 Duan Y, Dou S, Zhang H, Wu C, Wu M, Lu J. Linkage of A-to-I RNA editing in metazoans and the impact on genome evolution. Molecular Biology and Evolution. PMID 29048557 DOI: 10.1093/Molbev/Msx274  0.394
2017 Liu R, Yue Y, Jiang H, Lu J, Wu A, Geng D, Wang J, Lu J, Li S, Tang H, Lu X, Zhang K, Liu T, Yuan Y, Wang Q. A risk prediction model for post-stroke depression in Chinese stroke survivors based on clinical and socio-psychological features. Oncotarget. 8: 62891-62899. PMID 28968957 DOI: 10.18632/oncotarget.16907  0.306
2017 Luo S, Lu J. Silencing of transposable elements by piRNAs in Drosophila: An evolutionary perspective. Genomics, Proteomics & Bioinformatics. PMID 28602845 DOI: 10.1016/J.Gpb.2017.01.006  0.433
2017 Liu R, Yue Y, Jiang H, Lu J, Wu A, Geng D, Wang J, Lu J, Li S, Tang H, Lu X, Zhang K, Liu T, Yuan Y, Wang Q. A risk prediction model for post-stroke depression in Chinese stroke survivors based on clinical and socio-psychological features. Oncotarget. PMID 28446713 DOI: 10.18632/oncotarget.16907  0.306
2017 Duan Y, Dou S, Luo S, Zhang H, Lu J. Adaptation of A-to-I RNA editing in Drosophila. Plos Genetics. 13: e1006648. PMID 28282384 DOI: 10.1371/Journal.Pgen.1006648  0.376
2016 Shen M, Qu L, Ma M, Dou T, Lu J, Guo J, Hu Y, Yi G, Yuan J, Sun C, Wang K, Yang N. Genome-Wide Association Studies for Comb Traits in Chickens. Plos One. 11: e0159081. PMID 27427764 DOI: 10.1371/journal.pone.0159081  0.301
2016 Wei C, Wang H, Liu G, Zhao F, Kijas JW, Ma Y, Lu J, Zhang L, Cao J, Wu M, Wang G, Liu R, Liu Z, Zhang S, Liu C, et al. Genome-wide analysis reveals adaptation to high altitudes in Tibetan sheep. Scientific Reports. 6: 26770. PMID 27230812 DOI: 10.1038/srep26770  0.33
2016 Wang Y, Luo J, Zhang H, Lu J. microRNAs in the same clusters evolve to coordinately regulate functionally related genes. Molecular Biology and Evolution. PMID 27189568 DOI: 10.1093/Molbev/Msw089  0.601
2015 Zhang X, Zhu Y, Liu X, Hong X, Xu Y, Zhu P, Shen Y, Wu H, Ji Y, Wen X, Zhang C, Zhao Q, Wang Y, Lu J, Guo H. Plant biology. Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis. Science (New York, N.Y.). 348: 120-3. PMID 25838384 DOI: 10.1126/Science.Aaa2618  0.459
2015 Yu F, Lu J, Liu X, Gazave E, Chang D, Raj S, Hunter-Zinck H, Blekhman R, Arbiza L, Van Hout C, Morrison A, Johnson AD, Bis J, Cupples LA, Psaty BM, et al. Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions. Plos One. 10: e0121644. PMID 25807536 DOI: 10.1371/Journal.Pone.0121644  0.571
2013 Ye K, Lu J, Raj SM, Gu Z. Human expression QTLs are enriched in signals of environmental adaptation. Genome Biology and Evolution. 5: 1689-701. PMID 23960253 DOI: 10.1093/Gbe/Evt124  0.317
2012 Lu J, Clark AG. Impact of microRNA regulation on variation in human gene expression. Genome Research. 22: 1243-54. PMID 22456605 DOI: 10.1101/Gr.132514.111  0.509
2011 Zhou R, Ling S, Zhao W, Osada N, Chen S, Zhang M, He Z, Bao H, Zhong C, Zhang B, Lu X, Turissini D, Duke NC, Lu J, Shi S, et al. Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms. Molecular Biology and Evolution. 28: 2833-42. PMID 21504891 DOI: 10.1093/Molbev/Msr102  0.768
2010 Lu J, Shen Y, Carthew RW, Wang SM, Wu CI. Reply to evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics. 42: 9-10. PMID 25067898 DOI: 10.1038/Ng0110-9  0.589
2010 Tang T, Kumar S, Shen Y, Lu J, Wu ML, Shi S, Li WH, Wu CI. Adverse interactions between micro-RNAs and target genes from different species. Proceedings of the National Academy of Sciences of the United States of America. 107: 12935-40. PMID 20615957 DOI: 10.1073/Pnas.1007591107  0.595
2010 Lu J, Clark AG. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Research. 20: 212-27. PMID 19948818 DOI: 10.1101/Gr.095406.109  0.524
2008 Wu Q, Kim YC, Lu J, Xuan Z, Chen J, Zheng Y, Zhou T, Zhang MQ, Wu CI, Wang SM. Poly A- transcripts expressed in HeLa cells. Plos One. 3: e2803. PMID 18665230 DOI: 10.1371/Journal.Pone.0002803  0.537
2008 Wang HY, Fu Y, McPeek MS, Lu X, Nuzhdin S, Xu A, Lu J, Wu ML, Wu CI. Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. Proceedings of the National Academy of Sciences of the United States of America. 105: 6362-7. PMID 18430800 DOI: 10.1073/Pnas.0711774105  0.507
2008 Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Molecular Biology and Evolution. 25: 929-38. PMID 18296702 DOI: 10.1093/Molbev/Msn040  0.607
2008 Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nature Genetics. 40: 351-5. PMID 18278047 DOI: 10.1038/Ng.73  0.604
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Lu J, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.653
2007 Shapiro JA, Huang W, Zhang C, Hubisz MJ, Lu J, Turissini DA, Fang S, Wang HY, Hudson RR, Nielsen R, Chen Z, Wu CI. Adaptive genic evolution in the Drosophila genomes. Proceedings of the National Academy of Sciences of the United States of America. 104: 2271-6. PMID 17284599 DOI: 10.1073/Pnas.0610385104  0.779
2006 Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI. Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. Plos Genetics. 2: e199. PMID 17112320 DOI: 10.1371/Journal.Pgen.0020199  0.676
2006 Wang YJ, Yao Q, Chen KP, Wang Y, Lu J, Han X. Characterization of the genome structure of Bombyx mori densovirus (China isolate). Virus Genes. 35: 103-8. PMID 17048112 DOI: 10.1007/s11262-006-0034-3  0.317
2006 Lu J, Tang T, Tang H, Huang J, Shi S, Wu CI. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends in Genetics : Tig. 22: 126-31. PMID 16443304 DOI: 10.1016/J.Tig.2006.01.004  0.639
2005 Lu J, Wu CI. Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee. Proceedings of the National Academy of Sciences of the United States of America. 102: 4063-7. PMID 15728731 DOI: 10.1073/Pnas.0500436102  0.539
2004 Tang H, Wyckoff GJ, Lu J, Wu CI. A universal evolutionary index for amino acid changes. Molecular Biology and Evolution. 21: 1548-56. PMID 15140949 DOI: 10.1093/Molbev/Msh158  0.734
2003 Lu J, Li WH, Wu CI. Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes". Science (New York, N.Y.). 302: 988; author reply 98. PMID 14605352 DOI: 10.1126/Science.1088277  0.493
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