Tomomi Shimogori - Publications

Affiliations: 
RIKEN 

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Onishi K, Kikuchi SS, Abe T, Tokuhara T, Shimogori T. Molecular cell identities in the mediodorsal thalamus of infant mice and marmoset. The Journal of Comparative Neurology. PMID 34184265 DOI: 10.1002/cne.25203  0.337
2021 Kita Y, Nishibe H, Wang Y, Hashikawa T, Kikuchi SS, U M, Yoshida AC, Yoshida C, Kawase T, Ishii S, Skibbe H, Shimogori T. Cellular-resolution gene expression profiling in the neonatal marmoset brain reveals dynamic species- and region-specific differences. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33903237 DOI: 10.1073/pnas.2020125118  0.344
2021 Jager P, Moore G, Calpin P, Durmishi X, Salgarella I, Menage L, Kita Y, Wang Y, Kim DW, Blackshaw S, Schultz SR, Brickley S, Shimogori T, Delogu A. Dual midbrain and forebrain origins of thalamic inhibitory interneurons. Elife. 10. PMID 33522480 DOI: 10.7554/eLife.59272  0.503
2021 Kim DW, Liu K, Wang ZQ, Zhang YS, Bathini A, Brown MP, Lin SH, Washington PW, Sun C, Lindtner S, Lee B, Wang H, Shimogori T, Rubenstein JLR, Blackshaw S. Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons. Communications Biology. 4: 95. PMID 33479483 DOI: 10.1038/s42003-020-01616-7  0.484
2020 Murayama AY, Kuwako KI, Okahara J, Bae BI, Okuno M, Mashiko H, Shimogori T, Walsh CA, Sasaki E, Okano H. The polymicrogyria-associated GPR56 promoter preferentially drives gene expression in developing GABAergic neurons in common marmosets. Scientific Reports. 10: 21516. PMID 33299078 DOI: 10.1038/s41598-020-78608-4  0.317
2019 Arai Y, Cwetsch AW, Coppola E, Cipriani S, Nishihara H, Kanki H, Saillour Y, Freret-Hodara B, Dutriaux A, Okada N, Okano H, Dehay C, Nardelli J, Gressens P, Shimogori T, et al. Evolutionary Gain of Dbx1 Expression Drives Subplate Identity in the Cerebral Cortex. Cell Reports. 29: 645-658.e5. PMID 31618633 DOI: 10.1016/J.Celrep.2019.09.007  0.319
2018 Peng J, Fabre PJ, Dolique T, Swikert SM, Kermasson L, Shimogori T, Charron F. Sonic Hedgehog Is a Remotely Produced Cue that Controls Axon Guidance Trans-axonally at a Midline Choice Point. Neuron. 97: 326-340.e4. PMID 29346753 DOI: 10.1016/J.Neuron.2017.12.028  0.53
2017 Watson C, Shimogori T, Puelles L. Mouse Fgf8-Cre-LacZ lineage analysis defines the territory of the postnatal mammalian isthmus. The Journal of Comparative Neurology. PMID 28510270 DOI: 10.1002/cne.24242  0.331
2017 Kawata M, Taniguchi Y, Mori D, Yano F, Ohba S, Chung UI, Shimogori T, Mills AA, Tanaka S, Saito T. Different regulation of limb development by p63 transcript variants. Plos One. 12: e0174122. PMID 28333962 DOI: 10.1371/journal.pone.0174122  0.311
2016 Yamanaka T, Tosaki A, Kurosawa M, Shimogori T, Hattori N, Nukina N. Genome-wide analyses in neuronal cells reveal that USF transcription factors regulate lysosomal gene expression. The Febs Journal. PMID 26756308 DOI: 10.1111/Febs.13650  0.31
2015 Shimogori T, Blackshaw S. Large-scale ISH on mouse brain sections for systematic gene expression analysis in developing mouse diencephalon Neuromethods. 99: 207-220. DOI: 10.1007/978-1-4939-2303-8_10  0.484
2014 Caballero IM, Manuel MN, Molinek M, Quintana-Urzainqui I, Mi D, Shimogori T, Price DJ. Cell-autonomous repression of Shh by transcription factor Pax6 regulates diencephalic patterning by controlling the central diencephalic organizer. Cell Reports. 8: 1405-18. PMID 25176648 DOI: 10.1016/J.Celrep.2014.07.051  0.306
2013 Forni PE, Bharti K, Flannery EM, Shimogori T, Wray S. The indirect role of fibroblast growth factor-8 in defining neurogenic niches of the olfactory/GnRH systems. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 19620-34. PMID 24336726 DOI: 10.1523/JNEUROSCI.3238-13.2013  0.316
2013 Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M, Shimogori T. BTBD3 controls dendrite orientation toward active axons in mammalian neocortex. Science (New York, N.Y.). 342: 1114-8. PMID 24179155 DOI: 10.1126/science.1244505  0.325
2013 Scholpp S, Shimogori T. Building the gateway to consciousness-about the development of the thalamus. Frontiers in Neuroscience. 7: 94. PMID 23760777 DOI: 10.3389/Fnins.2013.00094  0.312
2013 Huilgol D, Udin S, Shimogori T, Saha B, Roy A, Aizawa S, Hevner RF, Meyer G, Ohshima T, Pleasure SJ, Zhao Y, Tole S. Dual origins of the mammalian accessory olfactory bulb revealed by an evolutionarily conserved migratory stream. Nature Neuroscience. 16: 157-65. PMID 23292680 DOI: 10.1038/Nn.3297  0.553
2012 Nakagawa Y, Shimogori T. Diversity of thalamic progenitor cells and postmitotic neurons. The European Journal of Neuroscience. 35: 1554-62. PMID 22607001 DOI: 10.1111/J.1460-9568.2012.08089.X  0.312
2012 Mashiko H, Yoshida AC, Kikuchi SS, Niimi K, Takahashi E, Aruga J, Okano H, Shimogori T. Comparative anatomy of marmoset and mouse cortex from genomic expression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 5039-53. PMID 22496550 DOI: 10.1523/Jneurosci.4788-11.2012  0.343
2011 Matsui A, Yoshida AC, Kubota M, Ogawa M, Shimogori T. Mouse in utero electroporation: controlled spatiotemporal gene transfection. Journal of Visualized Experiments : Jove. PMID 21860382 DOI: 10.3791/3024  0.306
2011 Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, Shimogori T. Region-specific gene expression in early postnatal mouse thalamus. The Journal of Comparative Neurology. 519: 544-61. PMID 21192083 DOI: 10.1002/Cne.22532  0.574
2011 Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, Shimogori T. Dynamic spatiotemporal gene expression in embryonic mouse thalamus. The Journal of Comparative Neurology. 519: 528-43. PMID 21192082 DOI: 10.1002/Cne.22531  0.624
2010 Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T. Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14925-30. PMID 21068293 DOI: 10.1523/Jneurosci.4499-10.2010  0.533
2010 Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, Grove EA. FGF8 acts as a classic diffusible morphogen to pattern the neocortex. Development (Cambridge, England). 137: 3439-48. PMID 20843859 DOI: 10.1242/Dev.055392  0.635
2010 Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J. Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain. Magnetic Resonance in Medicine. 64: 249-61. PMID 20577980 DOI: 10.1002/Mrm.22426  0.456
2010 Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, Blackshaw S. A genomic atlas of mouse hypothalamic development. Nature Neuroscience. 13: 767-75. PMID 20436479 DOI: 10.1038/Nn.2545  0.537
2010 Fabre PJ, Shimogori T, Charron F. Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 266-75. PMID 20053908 DOI: 10.1523/Jneurosci.3778-09.2010  0.537
2009 Suzuki-Hirano A, Shimogori T. The role of Fgf8 in telencephalic and diencephalic patterning. Seminars in Cell & Developmental Biology. 20: 719-25. PMID 19596327 DOI: 10.1016/j.semcdb.2009.04.002  0.306
2008 Kinameri E, Inoue T, Aruga J, Imayoshi I, Kageyama R, Shimogori T, Moore AW. Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis. Plos One. 3: e3859. PMID 19050759 DOI: 10.1371/journal.pone.0003859  0.356
2008 Kataoka A, Shimogori T. Fgf8 controls regional identity in the developing thalamus. Development (Cambridge, England). 135: 2873-81. PMID 18653561 DOI: 10.1242/dev.021618  0.364
2008 Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, Kokubo N, Kimura-Yoshida C, Matsuo I, Sumiyama K, Saitou N, Shimogori T, Okada N. Possible involvement of SINEs in mammalian-specific brain formation. Proceedings of the National Academy of Sciences of the United States of America. 105: 4220-5. PMID 18334644 DOI: 10.1073/Pnas.0709398105  0.35
2005 Shimogori T, Grove EA. Fibroblast growth factor 8 regulates neocortical guidance of area-specific thalamic innervation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 6550-60. PMID 16014716 DOI: 10.1523/Jneurosci.0453-05.2005  0.62
2004 Shimogori T, Banuchi V, Ng HY, Strauss JB, Grove EA. Embryonic signaling centers expressing BMP, WNT and FGF proteins interact to pattern the cerebral cortex. Development (Cambridge, England). 131: 5639-47. PMID 15509764 DOI: 10.1242/Dev.01428  0.63
2004 Shimogori T, VanSant J, Paik E, Grove EA. Members of the Wnt, Fz, and Frp gene families expressed in postnatal mouse cerebral cortex. The Journal of Comparative Neurology. 473: 496-510. PMID 15116386 DOI: 10.1002/Cne.20135  0.645
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