Sudhir Kumar - Publications

Affiliations: 
Arizona State University, Tempe, AZ, United States 
Area:
Molecular Evolution, Bioinformatics

323 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kumar S, Leeb AS, Vaughan AM, Kappe SHI. Plasmodium falciparum Cysteine Rich Secretory Protein uniquely localizes to one end of male gametes. Molecular and Biochemical Parasitology. 248: 111447. PMID 34998927 DOI: 10.1016/j.molbiopara.2022.111447  1
2022 Priya H, Dhar DW, Singh R, Kumar S, Dhandapani R, Pandey R, Govindasamy V, Kumar A. Co-cultivation Approach to Decipher the Influence of Nitrogen-Fixing Cyanobacterium on Growth and N Uptake in Rice Crop. Current Microbiology. 79: 53. PMID 34982252 DOI: 10.1007/s00284-021-02732-1  1
2021 Rani R, Sharma A, Wang J, Kumar S, Polaki US, Gandhi CR. Endotoxin-Stimulated Hepatic Stellate Cells Augment Acetaminophen-Induced Hepatocyte Injury. The American Journal of Pathology. PMID 34954210 DOI: 10.1016/j.ajpath.2021.11.011  1
2021 Caraballo-Ortiz MA, Miura S, Sanderford M, Dolker T, Tao Q, Weaver S, Pond SLK, Kumar S. TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Biorxiv : the Preprint Server For Biology. PMID 34931186 DOI: 10.1101/2021.12.13.472454  1
2021 Chroni A, Kumar S. Tumors Are Evolutionary Island-Like Ecosystems. Genome Biology and Evolution. 13. PMID 34894238 DOI: 10.1093/gbe/evab276  1
2021 Barba-Montoya J, Tao Q, Kumar S. Assessing rapid relaxed-clock methods for phylogenomic dating. Genome Biology and Evolution. PMID 34751377 DOI: 10.1093/gbe/evab251  1
2021 Sharma S, Kumar S. Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps. Nature Computational Science. 1: 573-577. PMID 34734192 DOI: 10.1038/s43588-021-00129-5  1
2021 Georgiou G, Kumar S, Würfel JU, Gilmore M, Underwood TSA, Rowbottom CG, Fenwick JD. The PTW microSilicon diode: Performance in small 6 and 15 MV photon fields and utility of density compensation. Medical Physics. PMID 34725831 DOI: 10.1002/mp.15329  1
2021 Kumar S, Haile MT, Hoopmann MR, Tran LT, Michaels SA, Morrone SR, Ojo KK, Reynolds LM, Kusebauch U, Vaughan AM, Moritz RL, Kappe SHI, Swearingen KE. Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector. Mbio. e0257521. PMID 34724830 DOI: 10.1128/mBio.02575-21  1
2021 Rai R, Kumar S, Singh KB, Khanka S, Singh Y, Arya KR, Kanojiya S, Maurya R, Singh D. Extract and fraction of Musa paradisiaca flower have osteogenic effect and prevent ovariectomy induced osteopenia. Phytomedicine : International Journal of Phytotherapy and Phytopharmacology. 93: 153750. PMID 34662767 DOI: 10.1016/j.phymed.2021.153750  1
2021 Townsend JP, Hassler HB, Wang Z, Miura S, Singh J, Kumar S, Ruddle NH, Galvani AP, Dornburg A. The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study. The Lancet. Microbe. PMID 34632431 DOI: 10.1016/S2666-5247(21)00219-6  1
2021 Ram CVS, Kumar S, Renjen PN, Kumar GP, Swaminathan J, Reddy CR, Kondati S, Sharma M, Selvan VLA, Sundaram M, Vasudevan A, Lackland D. Risk factors predisposing to acute stroke in India: a prospective study. Journal of Hypertension. 39: 2183-2189. PMID 34620808 DOI: 10.1097/HJH.0000000000002915  1
2021 Thakur P, Kumar S. Pretreatment of low-grade shredded dust e-waste to enhance silver recovery through biocyanidation by SAE1. 3 Biotech. 11: 454. PMID 34616648 DOI: 10.1007/s13205-021-02977-4  1
2021 Lal MK, Tiwari RK, Gahlaut V, Mangal V, Kumar A, Singh MP, Paul V, Kumar S, Singh B, Zinta G. Physiological and molecular insights on wheat responses to heat stress. Plant Cell Reports. PMID 34542670 DOI: 10.1007/s00299-021-02784-4  1
2021 Nagar S, Singh VP, Arora A, Dhakar R, Singh N, Singh GP, Meena S, Kumar S, Shiv Ramakrishnan R. Understanding the Role of Gibberellic Acid and Paclobutrazol in Terminal Heat Stress Tolerance in Wheat. Frontiers in Plant Science. 12: 692252. PMID 34489995 DOI: 10.3389/fpls.2021.692252  1
2021 Cai L, Wang Z, Kulathinal R, Kumar S, Ji S. Deep Low-Shot Learning for Biological Image Classification and Visualization From Limited Training Samples. Ieee Transactions On Neural Networks and Learning Systems. PMID 34487501 DOI: 10.1109/TNNLS.2021.3106831  1
2021 Chroni A, Miura S, Oladeinde O, Aly V, Kumar S. Migrations of cancer cells through the lens of phylogenetic biogeography. Scientific Reports. 11: 17184. PMID 34433859 DOI: 10.1038/s41598-021-96215-9  1
2021 Dasari K, Somarelli JA, Kumar S, Townsend JP. The somatic molecular evolution of cancer: Mutation, selection, and epistasis. Progress in Biophysics and Molecular Biology. PMID 34364910 DOI: 10.1016/j.pbiomolbio.2021.08.003  1
2021 Jabborova D, Annapurna K, Paul S, Kumar S, Saad HA, Desouky S, Ibrahim MFM, Elkelish A. Beneficial Features of Biochar and Arbuscular Mycorrhiza for Improving Spinach Plant Growth, Root Morphological Traits, Physiological Properties, and Soil Enzymatic Activities. Journal of Fungi (Basel, Switzerland). 7. PMID 34356950 DOI: 10.3390/jof7070571  0.01
2021 Kumar S, Sharma S. Evolutionary Sparse Learning for Phylogenomics. Molecular Biology and Evolution. PMID 34343318 DOI: 10.1093/molbev/msab227  1
2021 Khan P, Khan Y, Kumar S, Khan MS, Gandomi AH. HVD-LSTM based recognition of epileptic seizures and normal human activity. Computers in Biology and Medicine. 136: 104684. PMID 34332352 DOI: 10.1016/j.compbiomed.2021.104684  0.04
2021 Kaul R, Kumar K, Jeyaraman M, Goswami B, Choudhary MC, Chhabra HS, Kumar S. MRI-Based Morphometric Study Regarding Operative Windows of Oblique Lumbar Interbody Fusion in Indian Population. Indian Journal of Orthopaedics. 55: 366-373. PMID 34306549 DOI: 10.1007/s43465-021-00393-7  1
2021 Tao Q, Barba-Montoya J, Kumar S. Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies. Bioinformatics (Oxford, England). 37: i102-i110. PMID 34252953 DOI: 10.1093/bioinformatics/btab307  1
2021 Tao Q, Barba-Montoya J, Kumar S. Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies. Bioinformatics (Oxford, England). 37: i102-i110. PMID 34252953 DOI: 10.1093/bioinformatics/btab307  1
2021 Kumar A, Saini HS, Şengör S, Sani RK, Kumar S. Bioleaching of metals from waste printed circuit boards using bacterial isolates native to abandoned gold mine. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. PMID 34213670 DOI: 10.1007/s10534-021-00326-9  1
2021 Kumar A, Saini HS, Şengör S, Sani RK, Kumar S. Bioleaching of metals from waste printed circuit boards using bacterial isolates native to abandoned gold mine. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. PMID 34213670 DOI: 10.1007/s10534-021-00326-9  1
2021 Kumar R, Ranjan R, Jeyaraman M, Chaudhary D, Arora A, Kumar S. Pronator Quadratus Hemangioma (PQH): A Rare Case Report and Review. Indian Journal of Orthopaedics. 55: 1056-1063. PMID 34194663 DOI: 10.1007/s43465-020-00295-0  1
2021 Kumar R, Ranjan R, Jeyaraman M, Chaudhary D, Arora A, Kumar S. Pronator Quadratus Hemangioma (PQH): A Rare Case Report and Review. Indian Journal of Orthopaedics. 55: 1056-1063. PMID 34194663 DOI: 10.1007/s43465-020-00295-0  1
2021 Kumar S, Kumar V, Saini RK, Pant N, Singh R, Singh A, Kumar S, Singh S, Yadav BK, Krishan G, Raj A, Maurya NS, Kumar M. Floodplains landforms, clay deposition and irrigation return flow govern arsenic occurrence, prevalence and mobilization: A geochemical and isotopic study of the mid-Gangetic floodplains. Environmental Research. 111516. PMID 34166666 DOI: 10.1016/j.envres.2021.111516  1
2021 Kumar S, Kumar V, Saini RK, Pant N, Singh R, Singh A, Kumar S, Singh S, Yadav BK, Krishan G, Raj A, Maurya NS, Kumar M. Floodplains landforms, clay deposition and irrigation return flow govern arsenic occurrence, prevalence and mobilization: A geochemical and isotopic study of the mid-Gangetic floodplains. Environmental Research. 111516. PMID 34166666 DOI: 10.1016/j.envres.2021.111516  1
2021 Ranjan R, Kumar R, Jeyaraman M, Jain R, Chaudhary D, Kumar S. Hoffa Fracture in Skeletally Immature Patients: A Case Report and Review of Literature. Journal of Orthopaedic Case Reports. 11: 112-118. PMID 34141684 DOI: 10.13107/jocr.2021.v11.i02.2050  1
2021 Ranjan R, Kumar R, Jeyaraman M, Jain R, Chaudhary D, Kumar S. Hoffa Fracture in Skeletally Immature Patients: A Case Report and Review of Literature. Journal of Orthopaedic Case Reports. 11: 112-118. PMID 34141684 DOI: 10.13107/jocr.2021.v11.i02.2050  1
2021 Dey A, Ye J, De A, Debroye E, Ha SK, Bladt E, Kshirsagar AS, Wang Z, Yin J, Wang Y, Quan LN, Yan F, Gao M, Li X, Shamsi J, ... ... Kumar S, et al. State of the Art and Prospects for Halide Perovskite Nanocrystals. Acs Nano. PMID 34137264 DOI: 10.1021/acsnano.0c08903  1
2021 Dey A, Ye J, De A, Debroye E, Ha SK, Bladt E, Kshirsagar AS, Wang Z, Yin J, Wang Y, Quan LN, Yan F, Gao M, Li X, Shamsi J, ... ... Kumar S, et al. State of the Art and Prospects for Halide Perovskite Nanocrystals. Acs Nano. PMID 34137264 DOI: 10.1021/acsnano.0c08903  1
2021 Button-Simons KA, Kumar S, Carmago N, Haile MT, Jett C, Checkley LA, Kennedy SY, Pinapati RS, Shoue DA, McDew-White M, Li X, Nosten FH, Kappe SH, Anderson TJC, Romero-Severson J, et al. The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice. Communications Biology. 4: 734. PMID 34127785 DOI: 10.1038/s42003-021-02210-1  1
2021 Button-Simons KA, Kumar S, Carmago N, Haile MT, Jett C, Checkley LA, Kennedy SY, Pinapati RS, Shoue DA, McDew-White M, Li X, Nosten FH, Kappe SH, Anderson TJC, Romero-Severson J, et al. The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice. Communications Biology. 4: 734. PMID 34127785 DOI: 10.1038/s42003-021-02210-1  1
2021 Ranjan R, Kumar R, Jeyaraman M, Kumar S. Fibrolipomatous Hamartoma (FLH) of Median Nerve: A Rare Case Report and Review. Indian Journal of Orthopaedics. 55: 267-272. PMID 34113430 DOI: 10.1007/s43465-020-00149-9  1
2021 Ranjan R, Kumar R, Jeyaraman M, Kumar S. Fibrolipomatous Hamartoma (FLH) of Median Nerve: A Rare Case Report and Review. Indian Journal of Orthopaedics. 55: 267-272. PMID 34113430 DOI: 10.1007/s43465-020-00149-9  1
2021 Steel RWJ, Vigdorovich V, Dambrauskas N, Wilder BK, Arredondo SA, Goswami D, Kumar S, Carbonetti S, Swearingen KE, Nguyen T, Betz W, Camargo N, Fisher BS, Soden J, Thomas H, et al. Platelet derived growth factor receptor β (PDGFRβ) is a host receptor for the human malaria parasite adhesin TRAP. Scientific Reports. 11: 11328. PMID 34059712 DOI: 10.1038/s41598-021-90722-5  0.01
2021 Babaian C, Kumar S. How to Build a Super Predator: From Genotype to Phenotype. The American Biology Teacher. 83: 138-146. PMID 34012167 DOI: 10.1525/abt.2021.83.3.138  1
2021 Gupta N, Gupta DK, Kumar S, Gupta V. Scanning electron microscopy of Cysticercus fasciolaris (larval Taenia taeniaeformis Batsch, 1786) from the wild rat, Rattus rattus Linnaeus, 1758, morpho-physiology and risk to human health. Annals of Parasitology. 67: 31-38. PMID 34010548 DOI: 10.17420/ap6701.309  0.01
2021 Solari SF, Kumar S, Jagielski J, Kubo NM, Krumeich F, Shih CJ. Ligand-assisted solid phase synthesis of mixed-halide perovskite nanocrystals for color-pure and efficient electroluminescence. Journal of Materials Chemistry. C. 9: 5771-5778. PMID 33996098 DOI: 10.1039/d0tc04667a  1
2021 Barba-Montoya J, Tao Q, Kumar S. Molecular and morphological clocks for estimating evolutionary divergence times. Bmc Ecology and Evolution. 21: 83. PMID 33980146 DOI: 10.1186/s12862-021-01798-6  1
2021 Chowrasia D, Jafri A, Azad I, Rais J, Sharma N, Khan F, Kumar A, Kumar S, Arshad M. and growth inhibitory, anti-ovarian & anti-lung carcinoma effects of 1,5 diarylpenta-1,4-dien-3-one as synthetically modified curcumin analogue. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33955334 DOI: 10.1080/07391102.2021.1914166  1
2021 Kumar S, Tao Q, Weaver S, Sanderford M, Caraballo-Ortiz MA, Sharma S, Pond SLK, Miura S. An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic. Molecular Biology and Evolution. PMID 33942847 DOI: 10.1093/molbev/msab118  1
2021 Sittig KR, Laageide LG, Akhtar Z, Wall GC, Kumar SC. Cutaneous mucormycosis in a chronic lymphocytic leukemia patient on ibrutinib. Idcases. 24: e01120. PMID 33912391 DOI: 10.1016/j.idcr.2021.e01120  0.04
2021 Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution. PMID 33892491 DOI: 10.1093/molbev/msab120  1
2021 Pant N, Rai SP, Singh R, Kumar S, Saini RK, Purushothaman P, Nijesh P, Rawat YS, Sharma M, Pratap K. Impact of geology and anthropogenic activities over the water quality with emphasis on fluoride in water scarce Lalitpur district of Bundelkhand region, India. Chemosphere. 279: 130496. PMID 33878700 DOI: 10.1016/j.chemosphere.2021.130496  1
2021 Patel R, Kumar S. Epistasis produces an excess of invariant sites in neutral molecular evolution. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33875549 DOI: 10.1073/pnas.2018767118  1
2021 Ye S, Tian T, Christofferson AJ, Erikson S, Jagielski J, Luo Z, Kumar S, Shih CJ, Leroux JC, Bao Y. Continuous color tuning of single-fluorophore emission via polymerization-mediated through-space charge transfer. Science Advances. 7. PMID 33827807 DOI: 10.1126/sciadv.abd1794  1
2021 Singh NK, Sinha S, Keshree NK, Kothari S, Kumar S, Kumar P. Relative efficacy of veria and mastoidectomy techniques of cochlear implantation in preservation of sound-induced saccular responses. International Journal of Audiology. 1-9. PMID 33810782 DOI: 10.1080/14992027.2021.1905891  1
2021 Chandravanshi L, Shiv K, Kumar S. Developmental toxicity of cadmium in infants and children: a review. Environmental Analysis, Health and Toxicology. 36: e2021003-0. PMID 33730790 DOI: 10.5620/eaht.2021003  0.01
2021 Gogia A, Kumar S, Chellapurum SK, Biswas A, Mallick S. Primary Mediastinal B Cell Lymphoma: A Limited Institutional Experience with Uniform DAEPOCH-R Protocol. Indian Journal of Hematology & Blood Transfusion : An Official Journal of Indian Society of Hematology and Blood Transfusion. 37: 176-178. PMID 33707856 DOI: 10.1007/s12288-020-01301-z  1
2021 Gogia A, Kumar S, Kumar L, Sharma A, Mallick S. Safety and Efficacy of Bendamustine-Rituximab in Treatment Naïve Symptomatic Follicular Lymphoma: An Institutional Analysis. Indian Journal of Hematology & Blood Transfusion : An Official Journal of Indian Society of Hematology and Blood Transfusion. 37: 169-170. PMID 33707853 DOI: 10.1007/s12288-020-01294-9  1
2021 Goel D, Kumar S. Co-morbid conditions in COVID-19 patients in Uttarakhand state of India. Journal of Global Health. 11: 03029. PMID 33692884 DOI: 10.7189/jogh.11.03029  1
2021 Scheinfeldt LB, Brangan A, Kusic DM, Kumar S, Gharani N. Common Treatment, Common Variant: Evolutionary Prediction of Functional Pharmacogenomic Variants. Journal of Personalized Medicine. 11. PMID 33669176 DOI: 10.3390/jpm11020131  1
2021 Jaiswal SK, Mahajan S, Chakraborty A, Kumar S, Sharma VK. The genome sequence of reveals adaptive evolution of drought tolerance mechanisms. Iscience. 24: 102079. PMID 33644713 DOI: 10.1016/j.isci.2021.102079  0.01
2021 Saha P, Kumar S, Datta K, Tyagi RK. Upsurge in autophagy, associated with mifepristone-treated polycystic ovarian condition, is reversed upon thymoquinone treatment. The Journal of Steroid Biochemistry and Molecular Biology. 105823. PMID 33484844 DOI: 10.1016/j.jsbmb.2021.105823  1
2021 Kumar S, Vijayan R, Dash AK, Gourinath S, Tyagi RK. Nuclear receptor SHP dampens transcription function and abrogates mitotic chromatin association of PXR and ERα via intermolecular interactions. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1864: 194683. PMID 33444783 DOI: 10.1016/j.bbagrm.2020.194683  1
2021 Rowe H, Kumar S. MBE Emerging Classics 2021. Molecular Biology and Evolution. 38: 1. PMID 33399209 DOI: 10.1093/molbev/msaa310  1
2020 Kumar R, Ranjan R, Jeyaraman M, Kumar S. Tibial Nerve Schwannoma: An Unexplained Cause of Lateral Foot Pain - A Rare Case Report and Review. Journal of Orthopaedic Case Reports. 10: 1-6. PMID 34169007 DOI: 10.13107/jocr.2020.v10.i09.1880  1
2020 Kumar R, Ranjan R, Jeyaraman M, Kumar S. Tibial Nerve Schwannoma: An Unexplained Cause of Lateral Foot Pain - A Rare Case Report and Review. Journal of Orthopaedic Case Reports. 10: 1-6. PMID 34169007 DOI: 10.13107/jocr.2020.v10.i09.1880  1
2020 Babaian C, Kumar S. Molecular Memories of a Cambrian Fossil. The American Biology Teacher. 82: 586-595. PMID 33967280 DOI: 10.1525/abt.2020.82.9.586  1
2020 Vats S, Sudhakaran S, Bhardwaj A, Mandlik R, Sharma Y, Kumar S, Tripathi DK, Sonah H, Sharma T, Deshmukh R. Targeting aquaporins to alleviate hazardous metal(loid)s imposed stress in plants. Journal of Hazardous Materials. 408: 124910. PMID 33453583 DOI: 10.1016/j.jhazmat.2020.124910  0.01
2020 Kumar A, Panda D, Mohanty S, Biswal M, Dey P, Dash M, Sah RP, Kumar S, Baig MJ, Behera L. Role of sedoheptulose-1,7 bisphosphatase in low light tolerance of rice ( L.). Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 26: 2465-2485. PMID 33424159 DOI: 10.1007/s12298-020-00905-z  1
2020 Kumar S, Chroni A, Tamura K, Sanderford M, Oladeinde O, Aly V, Vu T, Miura S. PathFinder: Bayesian inference of clone migration histories in cancer. Bioinformatics (Oxford, England). 36: i675-i683. PMID 33381835 DOI: 10.1093/bioinformatics/btaa795  1
2020 Barba-Montoya J, Tao Q, Kumar S. Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated. Bioinformatics (Oxford, England). 36: i884-i894. PMID 33381826 DOI: 10.1093/bioinformatics/btaa820  1
2020 Duhan M, Sindhu J, Kumar P, Devi M, Singh R, Kumar R, Lal S, Kumar A, Kumar S, Hussain K. Quantitative structure activity relationship studies of novel hydrazone derivatives as α-amylase inhibitors with index of ideality of correlation. Journal of Biomolecular Structure & Dynamics. 1-22. PMID 33357037 DOI: 10.1080/07391102.2020.1863861  1
2020 Kumar S, Rowe H. MBE Transitions to the Open Access Publication Model in 2021. Molecular Biology and Evolution. PMID 33225356 DOI: 10.1093/molbev/msaa269  1
2020 Liu L, Chandrashekar P, Zeng B, Sanderford MD, Kumar S, Gibson G. TreeMap: a structured approach to fine mapping of eQTL variants. Bioinformatics (Oxford, England). PMID 33135051 DOI: 10.1093/bioinformatics/btaa927  1
2020 Kumar S, Tao Q, Weaver S, Sanderford M, Caraballo-Ortiz MA, Sharma S, Pond SLK, Miura S. An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic. Biorxiv : the Preprint Server For Biology. PMID 32995781 DOI: 10.1101/2020.09.24.311845  1
2020 Kumar S. A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 36. Molecular Biology and Evolution. PMID 32930791 DOI: 10.1093/molbev/msaa205  0.01
2020 Dubey B, Jackson M, Zeigler-Johnson C, Devarajan K, Flores-Obando RE, McFarlane-Anderson N, Tulloch-Reid M, Aiken W, Kimbro K, Reed D, Kidd LR, Gibbs D, Kumar S, Ragin C. Interactive effect of TLR SNPs and exposure to sexually transmitted infections on prostate cancer risk in Jamaican men. The Prostate. PMID 32894795 DOI: 10.1002/Pros.24067  0.01
2020 Leitner T, Kumar S. Where Did SARS-CoV-2 Come From? Molecular Biology and Evolution. 37: 2463-2464. PMID 32893295 DOI: 10.1093/molbev/msaa162  0.04
2020 Vendrely KM, Kumar S, Li X, Vaughan AM. Humanized Mice and the Rebirth of Malaria Genetic Crosses. Trends in Parasitology. PMID 32891493 DOI: 10.1016/j.pt.2020.07.009  1
2020 Pyott SJ, van Tuinen M, Screven LA, Schrode KM, Bai JP, Barone CM, Price SD, Lysakowski A, Sanderford M, Kumar S, Santos-Sacchi J, Lauer AM, Park TJ. Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats. Current Biology : Cb. PMID 32888484 DOI: 10.1016/J.Cub.2020.08.035  1
2020 Singh JP, Dagar M, Dagar G, Kumar S, Rawal S, Sharma RD, Tyagi RK, Bagchi G. Activation of GPR56, a novel adhesion GPCR, is necessary for nuclear androgen receptor signaling in prostate cells. Plos One. 15: e0226056. PMID 32881870 DOI: 10.1371/journal.pone.0226056  1
2020 Mello B, Tao Q, Barba-Montoya J, Kumar S. Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches. Molecular Ecology Resources. PMID 32881388 DOI: 10.1111/1755-0998.13249  1
2020 Kumar S, Gogia A, Gupta R, Mallick S. Chronic lymphocytic leukemia with Dermatomyositis : A therapeutic challenge. Turkish Journal of Haematology : Official Journal of Turkish Society of Haematology. PMID 32819077 DOI: 10.4274/tjh.galenos.2020.2020.0331  1
2020 Beucher H, Kumar S, Kumar R, Merino E, Hu WH, Stemmler G, Cuesta-Galisteo S, Gonzalez J, Bezinge L, Jagielski J, Shih CJ, Nevado C. Phosphorescent k3-(N^C^C)-Gold(III) Complexes: Synthesis, Photophysics, Computational Studies and Application to Solution-Processable OLEDs. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32780903 DOI: 10.1002/Chem.202003571  1
2020 Zhou X, Dou Q, Fan G, Zhang Q, Sanderford M, Kaya A, Johnson J, Karlsson EK, Tian X, Mikhalchenko A, Kumar S, Seluanov A, Zhang ZD, Gorbunova V, Liu X, et al. Beaver and Naked Mole Rat Genomes Reveal Common Paths to Longevity. Cell Reports. 32: 107949. PMID 32726638 DOI: 10.1016/J.Celrep.2020.107949  1
2020 Thakur P, Kumar S. Metallurgical processes unveil the unexplored "sleeping mines" e- waste: a review. Environmental Science and Pollution Research International. PMID 32533494 DOI: 10.1007/s11356-020-09405-9  0.01
2020 Govil T, Saxena P, Samanta D, Singh SS, Kumar S, Salem DR, Sani RK. Adaptive Enrichment of a Thermophilic Bacterial Isolate for Enhanced Enzymatic Activity. Microorganisms. 8. PMID 32526936 DOI: 10.3390/microorganisms8060871  1
2020 Kumar S, Nahum AE, Chetty IJ. Monte-Carlo-computed dose, kerma and fluence distributions in heterogeneous slab geometries irradiated by small megavoltage photon fields. Physics in Medicine and Biology. PMID 32485691 DOI: 10.1088/1361-6560/Ab98D1  1
2020 Georgiou G, Kumar S, Wuerfel J, Underwood TSA, Thompson J, Hill MA, Rowbottom CG, Fenwick JD. Density compensated diodes for small field dosimetry: comprehensive testing and implications for design. Physics in Medicine and Biology. PMID 32392539 DOI: 10.1088/1361-6560/ab91d9  1
2020 Kumari P, Kumar S, Kaur K, Gupta UD, Bhagyawant SS, Tyagi JS. Phosphatase-defective DevS sensor kinase mutants permit constitutive expression of DevR-regulated dormancy genes in Mycobacterium tuberculosis. The Biochemical Journal. PMID 32309848 DOI: 10.1042/BCJ20200113  0.01
2020 Pisarek-Horowitz A, Fan X, Kumar S, Rasouly HM, Sharma R, Chen H, Coser K, Bluette CT, Hirenallur-Shanthappa D, Anderson SR, Yang H, Beck LH, Bonegio RG, Henderson JM, Berasi SP, et al. Loss of Roundabout Guidance Receptor 2 (Robo2) in Podocytes Protects Adult Mice from Glomerular Injury by Maintaining Podocyte Foot Process Structure. The American Journal of Pathology. PMID 32220420 DOI: 10.1016/J.Ajpath.2019.12.009  1
2020 Misra T, Arora A, Marwaha S, Chinnusamy V, Rao AR, Jain R, Sahoo RN, Ray M, Kumar S, Raju D, Jha RR, Nigam A, Goel S. SpikeSegNet-a deep learning approach utilizing encoder-decoder network with hourglass for spike segmentation and counting in wheat plant from visual imaging. Plant Methods. 16: 40. PMID 32206080 DOI: 10.1186/s13007-020-00582-9  1
2020 Chandrashekar P, Ahmadinejad N, Wang J, Sekulic A, Egan JB, Asmann YW, Kumar S, Maley C, Liu L. Somatic selection distinguishes oncogenes and tumor suppressor genes. Bioinformatics (Oxford, England). 36: 1712-1717. PMID 32176769 DOI: 10.1093/Bioinformatics/Btz851  1
2020 Sharma DK, Kumar S, Auluck S. Strain induced optoelectronic properties of two dimensional MnPSe3/WS2 heterostructure. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 32163937 DOI: 10.1088/1361-648X/ab7f6d  0.01
2020 Tao Q, Barba-Montoya J, Huuki LA, Durnan MK, Kumar S. Relative efficiencies of simple and complex substitution models in estimating divergence times in phylogenomics. Molecular Biology and Evolution. PMID 32119075 DOI: 10.1093/molbev/msaa049  1
2020 Miura S, Vu T, Deng J, Buturla T, Oladeinde O, Choi J, Kumar S. Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data. Scientific Reports. 10: 3498. PMID 32103044 DOI: 10.1038/S41598-020-59006-2  1
2020 Campitelli P, Modi T, Kumar S, Ozkan SB. The Role of Conformational Dynamics and Allostery in Modulating Protein Evolution. Annual Review of Biophysics. PMID 32075411 DOI: 10.1146/annurev-biophys-052118-115517  1
2020 Somesh Vikramdeo K, Saha P, Dutta S, Kumar N, Roy Chowdhury A, Kumar S, Kumar Tyagi R, Ghosh I, Datta K. Hyaluronan-binding protein 1 (HABP1) overexpression triggers induction of senescence in fibroblasts cells. Cell Biology International. PMID 32068317 DOI: 10.1002/cbin.11326  1
2020 Kumar S, Verma AK, Rani R, Sharma A, Wang J, Shah SA, Behari J, Salazar Gonzalez R, Kohli R, Gandhi CR. Hepatic deficiency of augmenter of liver regeneration predisposes to nonalcoholic steatohepatitis and fibrosis. Hepatology (Baltimore, Md.). PMID 32031683 DOI: 10.1002/Hep.31167  1
2020 Kumar S. A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 35. Molecular Biology and Evolution. 37: 300. PMID 31986213 DOI: 10.1093/molbev/msz277  0.01
2020 Miura S, Tamura K, Tao Q, Huuki LA, Kosakovsky Pond SL, Priest J, Deng J, Kumar S. A new method for inferring timetrees from temporally sampled molecular sequences. Plos Computational Biology. 16: e1007046. PMID 31951607 DOI: 10.1371/Journal.Pcbi.1007046  1
2020 Pal S, Mittapelly N, Husain A, Kushwaha S, Chattopadhyay S, Kumar P, Ramakrishna E, Kumar S, Maurya R, Sanyal S, Gayen JR, Mishra PR, Chattopadhyay N. A butanolic fraction from the standardized stem extract of Cassia occidentalis L delivered by a self-emulsifying drug delivery system protects rats from glucocorticoid-induced osteopenia and muscle atrophy. Scientific Reports. 10: 195. PMID 31932603 DOI: 10.1038/s41598-019-56853-6  1
2020 Stecher G, Tamura K, Kumar S. Molecular Evolutionary Genetics Analysis (MEGA) for macOS. Molecular Biology and Evolution. PMID 31904846 DOI: 10.1093/molbev/msz312  1
2019 Goyal AK, Bhadada S, Malik N, Anand A, Kumar R, Bammidi S, Tyagi R, Modgil S, Sharma K, Bali P, Pal DK, Kumar S, Kaur N, Kaushal S, Tiwari A, ... ... Kumar S, et al. Guinness world record attempt as a method to pivot the role of Yoga in Diabetes management. Annals of Neurosciences. 26: 21-24. PMID 31975768 DOI: 10.5214/ans.0972.7531.260105  1
2019 Kumar S, Kalra N, Tyagi R, Faridi MMA, Khatri A, Satish VNV. Evaluation of oral health of 6 to 10-year-old asthmatic children receiving bronchodilator through inhaler. Indian Journal of Dental Research : Official Publication of Indian Society For Dental Research. 30: 670-677. PMID 31854355 DOI: 10.4103/ijdr.IJDR_593_14  0.01
2019 Kumar S, Rowe H. MBE Emerging Classics 2020. Molecular Biology and Evolution. PMID 31851338 DOI: 10.1093/molbev/msz285  1
2019 Chroni A, Vu T, Miura S, Kumar S. Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach. Cancers. 11. PMID 31783570 DOI: 10.3390/Cancers11121880  1
2019 Kumar S, Jagielski J, Marcato T, Solari SF, Shih CJ. Understanding the Ligand Effects on Photophysical, Optical, and Electroluminescent Characteristics of Hybrid Lead Halide Perovskite Nanocrystal Solids. The Journal of Physical Chemistry Letters. PMID 31736317 DOI: 10.1021/Acs.Jpclett.9B02950  1
2019 Babaian C, Kumar S. Adventures in Evolution: The Narrative of Tardigrada, Trundlers in Time. The American Biology Teacher. 81: 543-552. PMID 31723303 DOI: 10.1525/abt.2019.81.8.543  1
2019 Govil T, Sharma W, Chauhan N, Kumar S, Salem DR, Sani RK. "MINES" method for genomic DNA extraction from deep biosphere biofilms. Journal of Microbiological Methods. 105730. PMID 31676422 DOI: 10.1016/j.mimet.2019.105730  1
2019 Akhtar MJ, Ahamed M, Alhadlaq HA, Kumar S, Alrokayan SA. Mitochondrial dysfunction, autophagy stimulation and non-apoptotic cell death caused by nitric oxide-inducing Pt-coated Au nanoparticle in human lung carcinoma cells. Biochimica Et Biophysica Acta. General Subjects. 129452. PMID 31676295 DOI: 10.1016/j.bbagen.2019.129452  1
2019 Somarelli JA, Gardner H, Cannataro VL, Gunady EF, Boddy AM, Johnson NA, Fisk JN, Gaffney SG, Chuang JH, Li S, Ciccarelli FD, Panchenko AR, Megquier K, Kumar S, Dornburg A, et al. Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution. PMID 31642480 DOI: 10.1093/Molbev/Msz242  1
2019 Tao Q, Tamura K, Mello B, Kumar S. Reliable confidence intervals for RelTime estimates of evolutionary divergence times. Molecular Biology and Evolution. PMID 31638157 DOI: 10.1093/molbev/msz236  1
2019 Li X, Kumar S, McDew-White M, Haile M, Cheeseman IH, Emrich S, Button-Simons K, Nosten F, Kappe SHI, Ferdig MT, Anderson TJC, Vaughan AM. Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle. Plos Genetics. 15: e1008453. PMID 31609965 DOI: 10.1371/Journal.Pgen.1008453  1
2019 Sharma RC, Kumar S, Kumar S, Mann M, Mayank, Sharma M. Photoacoustic remote sensing of suspicious objects for defence and forensic applications. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 224: 117445. PMID 31382229 DOI: 10.1016/j.saa.2019.117445  1
2019 Xu K, Kosoy R, Shameer K, Kumar S, Liu L, Readhead B, Belbin GM, Lee HC, Chen R, Dudley JT. Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans. Bmc Genetics. 20: 52. PMID 31266448 DOI: 10.1186/S12863-019-0758-4  1
2019 Rauthan K, Goel D, Kumar S. Annotation of a hypothetical protein (WP_002969292.1) from Brucella abortus. Bioinformation. 15: 315-320. PMID 31249433 DOI: 10.6026/97320630015315  1
2019 Patel R, Kumar S. On estimating evolutionary probabilities of population variants. Bmc Evolutionary Biology. 19: 133. PMID 31238981 DOI: 10.1186/s12862-019-1455-7  1
2019 Jafri A, Siddiqui S, Rais J, Ahmad MS, Kumar S, Jafar T, Afzal M, Arshad M. Induction of apoptosis by piperine in human cervical adenocarcinoma via ROS mediated mitochondrial pathway and caspase-3 activation. Excli Journal. 18: 154-164. PMID 31217779 DOI: 10.17179/excli2018-1928  1
2019 Kaur D, Rasane P, Singh J, Kaur S, Kumar V, Mahato DK, Dey A, Dhawan K, Kumar S. Aging: Overview and Considerations for the Development of Geriatric Foods. Current Aging Science. PMID 31109282 DOI: 10.2174/1874609812666190521110548  0.36
2019 Singh RK, Tomar P, Dharawat S, Kumar S, Gourinath S. N-terminal residues are crucial for quaternary structure and active site conformation for the phosphoserine aminotransferase from enteric human parasite E. histolytica. International Journal of Biological Macromolecules. PMID 30959130 DOI: 10.1016/j.ijbiomac.2019.04.027  1
2019 Kumar RR, Hasija S, Goswami S, Tasleem M, Sakhare A, Kumar S, Bakshi S, Jambhulkar S, Rai GK, Singh B, Singh GP, Pathak H, Viswanathan C, Praveen S. Gamma irradiation protect the developing wheat endosperm from oxidative damage by balancing the trade-off between the defence network and grains quality. Ecotoxicology and Environmental Safety. 174: 637-648. PMID 30875557 DOI: 10.1016/J.Ecoenv.2019.03.020  1
2019 Pal S, Kumar P, Ramakrishna E, Kumar S, Porwal K, Kumar B, Arya KR, Maurya R, Chattopadhyay N. Extract and fraction of Cassia occidentalis L. (a synonym of Senna occidentalis) have osteogenic effect and prevent glucocorticoid-induced osteopenia. Journal of Ethnopharmacology. PMID 30703497 DOI: 10.1016/J.Jep.2019.01.029  1
2019 Tao Q, Tamura K, Battistuzzi F, Kumar S. A new method for detecting autocorrelation of evolutionary rates in large phylogenies. Molecular Biology and Evolution. PMID 30689923 DOI: 10.1093/molbev/msz014  1
2019 Liu L, Sanderford MD, Patel R, Chandrashekar P, Gibson G, Kumar S. Biological relevance of computationally predicted pathogenicity of noncoding variants. Nature Communications. 10: 330. PMID 30659175 DOI: 10.1038/S41467-018-08270-Y  1
2019 Kumar S. MBE Citation Classics (2019 Edition). Molecular Biology and Evolution. PMID 30629262 DOI: 10.1093/molbev/msy239  0.01
2018 Kumar S. A Report by the Editor-in-Chief for Molecular Biology and Evolution (MBE), Volume 34. Molecular Biology and Evolution. PMID 30551166 DOI: 10.1093/molbev/msy219  0.01
2018 Kumar S, Rani R, Karns R, Gandhi CR. Augmenter of liver regeneration protein deficiency promotes hepatic steatosis by inducing oxidative stress and microRNA-540 expression. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201802015R. PMID 30540918 DOI: 10.1096/Fj.201802015R  1
2018 Miura S, Huuki LA, Buturla T, Vu T, Gomez K, Kumar S. Computational enhancement of single-cell sequences for inferring tumor evolution. Bioinformatics (Oxford, England). 34: i917-i926. PMID 30423071 DOI: 10.1093/Bioinformatics/Bty571  1
2018 Rani R, Kumar S, Sharma A, Mohanty SK, Donnelly B, Tiao GM, Gandhi C. Mechanisms of Concanavalin A-induced cytokine synthesis by hepatic stellate cells: Distinct roles of interferon regulatory factor-1 in liver injury. The Journal of Biological Chemistry. PMID 30348900 DOI: 10.1074/jbc.RA118.005583  1
2018 Hedges SB, Tao Q, Walker M, Kumar S. Accurate timetrees require accurate calibrations. Proceedings of the National Academy of Sciences of the United States of America. PMID 30266795 DOI: 10.1073/pnas.1812558115  1
2018 Singh A, Singh P, Kumar B, Kumar S, Dev K, Maurya R. Detection of flavonoids from Spinacia oleracea leaves using HPLC-ESI-QTOF-MS/MS and UPLC-QqQ-MS/MS techniques. Natural Product Research. 1-4. PMID 30259760 DOI: 10.1080/14786419.2018.1489395  1
2018 Fenwick JD, Georgiou G, Rowbottom CG, Underwood TSA, Kumar S. Reply to Comment on 'Origins of the changing detector response in small megavotage photon radiation fields'. Physics in Medicine and Biology. PMID 30207980 DOI: 10.1088/1361-6560/aae0e4  1
2018 Kumar S, Rohatgi A, Chaudhari H, Thakor P. Evolving Landscape of Multiple Sclerosis in India: Challenges in the Management. Annals of Indian Academy of Neurology. 21: 107-115. PMID 30122834 DOI: 10.4103/aian.AIAN_33_18  0.01
2018 Bibra M, Kumar S, Wang J, Bhalla A, Salem DR, Sani RK. Single pot bioconversion of prairie cordgrass into biohydrogen by thermophiles. Bioresource Technology. 266: 232-241. PMID 29982043 DOI: 10.1016/j.biortech.2018.06.046  1
2018 Miura S, Gomez K, Murillo O, Huuki LA, Vu T, Buturla T, Kumar S. Predicting clone genotypes from tumor bulk sequencing of multiple samples. Bioinformatics (Oxford, England). PMID 29931046 DOI: 10.1093/Bioinformatics/Bty469  1
2018 Singla R, Tewari S, Duhan J, Kumar S, Gill GS, Jain N. Effect of local anesthesia containing vasoconstrictor on sealing ability of dentin with two adhesive systems: Dye leakage and scanning electron microscopy study. Journal of Conservative Dentistry : Jcd. 21: 339-343. PMID 29899641 DOI: 10.4103/JCD.JCD_409_16  1
2018 Tamura K, Tao Q, Kumar S. Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates. Molecular Biology and Evolution. 35: 1770-1782. PMID 29893954 DOI: 10.1093/molbev/msy044  1
2018 Battistuzzi FU, Tao Q, Jones L, Tamura K, Kumar S. RelTime relaxes the strict molecular clock throughout the phylogeny. Genome Biology and Evolution. PMID 29878203 DOI: 10.1093/gbe/evy118  1
2018 Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S. Adaptive landscape of protein variation in human exomes. Molecular Biology and Evolution. PMID 29846678 DOI: 10.1093/Molbev/Msy107  1
2018 Fenwick JD, Georgiou G, Rowbottom CG, Underwood TSA, Kumar S, Nahum AE. Origins of the changing detector response in small megavoltage photon radiation fields. Physics in Medicine and Biology. PMID 29757158 DOI: 10.1088/1361-6560/aac478  1
2018 Lignos I, Morad V, Shynkarenko Y, Bernasconi C, Maceiczyk RM, Protesescu L, Bertolotti F, Kumar S, Ochsenbein ST, Masciocchi N, Guagliardi A, Shih CJ, Bodnarchuk MI, deMello AJ, Kovalenko MV. Exploration of Near Infrared-Emissive Colloidal Multinary Lead Halide Perovskite Nanocrystals using an Automated Microfluidic Platform. Acs Nano. PMID 29754493 DOI: 10.1021/Acsnano.8B01122  1
2018 Kumari R, Kumar S, Ahmad MK, Singh R, Kant Kumar S, Pradhan A, Chandra S, Kumar S. Promoter variants of TNF-α rs1800629 and IL-10 rs1800871 are independently associated with the susceptibility of coronary artery disease in north Indian. Cytokine. 110: 131-136. PMID 29734056 DOI: 10.1016/j.cyto.2018.04.035  1
2018 Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution. PMID 29722887 DOI: 10.1093/molbev/msy096  1
2018 Kumar S, Patel R. Neutral theory, disease mutations, and personal exomes. Molecular Biology and Evolution. PMID 29688514 DOI: 10.1093/molbev/msy085  1
2018 Krieg F, Ochsenbein ST, Yakunin S, Ten Brinck S, Aellen P, Süess A, Clerc B, Guggisberg D, Nazarenko O, Shynkarenko Y, Kumar S, Shih CJ, Infante I, Kovalenko MV. Colloidal CsPbX(X = Cl, Br, I) Nanocrystals 2.0: Zwitterionic Capping Ligands for Improved Durability and Stability. Acs Energy Letters. 3: 641-646. PMID 29552638 DOI: 10.1021/Acsenergylett.8B00035  1
2018 Choudhary D, Kothari P, Tripathi AK, Singh S, Adhikary S, Ahmad N, Kumar S, Dev K, Mishra VK, Shukla S, Maurya R, Mishra PR, Trivedi R. Spinacia oleracea extract attenuates disease progression and sub-chondral bone changes in monosodium iodoacetate-induced osteoarthritis in rats. Bmc Complementary and Alternative Medicine. 18: 69. PMID 29463254 DOI: 10.1186/s12906-018-2117-9  1
2018 Kumar A, Saini HS, Kumar S. Enhancement of gold and silver recovery from discarded computer printed circuit boards by Pseudomonas balearica SAE1 using response surface methodology (RSM). 3 Biotech. 8: 100. PMID 29430362 DOI: 10.1007/s13205-018-1129-y  1
2018 Gomez K, Miura S, Huuki LA, Spell BS, Townsend JP, Kumar S. Somatic evolutionary timings of driver mutations. Bmc Cancer. 18: 85. PMID 29347918 DOI: 10.1186/S12885-017-3977-Y  1
2018 Kumar S, Rowe H. MBE Citation Classics (2018 Edition). Molecular Biology and Evolution. 35: 1-2. PMID 29309689 DOI: 10.1093/molbev/msx313  1
2017 Sreeraj VS, Parija S, Uvais NA, Mohanty S, Kumar S. Indian nursing students' attitudes toward mental illness and persons with mental illness. Industrial Psychiatry Journal. 26: 223-227. PMID 30089973 DOI: 10.4103/ipj.ipj_25_16  1
2017 Jagielski J, Kumar S, Wang M, Scullion D, Lawrence R, Li YT, Yakunin S, Tian T, Kovalenko MV, Chiu YC, Santos EJG, Lin S, Shih CJ. Aggregation-induced emission in lamellar solids of colloidal perovskite quantum wells. Science Advances. 3: eaaq0208. PMID 29282451 DOI: 10.1126/Sciadv.Aaq0208  1
2017 Kumar S, Surati KR, Lawrence R, Vamja AC, Yakunin S, Kovalenko MV, Santos EJG, Shih CJ. Design and Synthesis of Heteroleptic Iridium(III) Phosphors for Efficient Organic Light-Emitting Devices. Inorganic Chemistry. PMID 29210577 DOI: 10.1021/Acs.Inorgchem.7B02872  1
2017 Singh PK, Tang M, Kumar S, Shrivastava AK. Decoding the role of hypothetical protein All3255 of Anabaena PCC7120 in heavy metal stress management in Escherichia coli. Archives of Microbiology. PMID 29189890 DOI: 10.1007/s00203-017-1462-2  1
2017 Kumar S. A Report by the Editor-in-Chief for MBE, Volume 33. Molecular Biology and Evolution. PMID 29155952 DOI: 10.1093/molbev/msx280  0.01
2017 Bansal T, Popli S, Bangarwa N, Kumar S, Yadav P. Magill forceps: A savior in bronchoscopy. Saudi Journal of Anaesthesia. 11: 498. PMID 29033738 DOI: 10.4103/sja.SJA_100_17  0.01
2017 Kumar A, Saini HS, Kumar S. Bioleaching of Gold and Silver from Waste Printed Circuit Boards by Pseudomonas balearica SAE1 Isolated from an e-Waste Recycling Facility. Current Microbiology. PMID 29027582 DOI: 10.1007/s00284-017-1365-0  1
2017 Kumari R, Kumar S, Ahmad MK, Singh R, Pradhan A, Chandra S, Kumar S. TNF-α/IL-10 ratio: An independent predictor for coronary artery disease in North Indian population. Diabetes & Metabolic Syndrome. PMID 28988596 DOI: 10.1016/j.dsx.2017.09.006  1
2017 Khan MP, Singh AK, Joharapurkar AA, Yadav M, Shree S, Kumar H, Gurjar A, Mishra JS, Chandra Tiwari M, Nagar GK, Kumar S, Ramachandran R, Sharan A, Jain MR, Trivedi AK, et al. Erratum. Pathophysiological Mechanism of Bone Loss in Type 2 Diabetes Involves Inverse Regulation of Osteoblast Function by PGC-1α and Skeletal Muscle Atrogenes: AdipoR1 as a Potential Target for Reversing Diabetes-Induced Osteopenia. Diabetes 2015;64:2609-2623. Diabetes. PMID 28982654 DOI: 10.2337/db17-er12b  1
2017 Umakanth B, Vishalakshi B, Sathish Kumar P, Rama Devi SJS, Bhadana VP, Senguttuvel P, Kumar S, Sharma SK, Sharma PK, Prasad MS, Madhav MS. Diverse Rice Landraces of North-East India Enables the Identification of Novel Genetic Resources for Magnaporthe Resistance. Frontiers in Plant Science. 8: 1500. PMID 28912793 DOI: 10.3389/fpls.2017.01500  0.01
2017 Kumar S, Rathkolb B, Sabrautzki S, Krebs S, Kemter E, Becker L, Beckers J, Bekeredjian R, Brommage R, Calzada-Wack J, Garrett L, Hölter SM, Horsch M, Klingenspor M, Klopstock T, et al. Standardized, systemic phenotypic analysis reveals kidney dysfunction as main alteration of Kctd1 (I27N) mutant mice. Journal of Biomedical Science. 24: 57. PMID 28818080 DOI: 10.1186/s12929-017-0365-5  1
2017 Kumar S, Jagielski J, Kallikounis N, Kim YH, Wolf C, Jenny F, Tian T, Hofer C, Chiu YC, Stark WJ, Lee TW, Shih CJ. Ultra-Pure Green Light Emitting Diodes Using Two-Dimensional Formamidinium Perovskites: Achieving Rec. 2020 Color Coordinates. Nano Letters. PMID 28770603 DOI: 10.1021/Acs.Nanolett.7B01544  1
2017 Gibbons JA, Smith HL, Kumar SC, Duggins KJ, Bushman AM, Danielson JM, Yost WJ, Wadle JJ. Antimicrobial stewardship in the treatment of skin and soft tissue infections. American Journal of Infection Control. PMID 28732743 DOI: 10.1016/j.ajic.2017.05.013  0.01
2017 Rani R, Tandon A, Wang J, Kumar S, Gandhi CR. Stellate Cells Orchestrate Concanavalin A-Induced Acute Liver Damage. The American Journal of Pathology. PMID 28710903 DOI: 10.1016/j.ajpath.2017.05.015  1
2017 Kumar S, Kumar M, Ekka R, Dvorin JD, Paul AS, Madugundu AK, Gilberger T, Gowda H, Duraisingh MT, Keshava Prasad TS, Sharma P. PfCDPK1 mediated signaling in erythrocytic stages of Plasmodium falciparum. Nature Communications. 8: 63. PMID 28680058 DOI: 10.1038/S41467-017-00053-1  1
2017 Kumar S, Konikoff C, Sanderford M, Liu L, Newfeld S, Ye J, Kulathinal RJ. FlyExpress 7: An Integrated Discovery Platform To Study Co-expressed Genes Using In Situ Hybridization Images in Drosophila. G3 (Bethesda, Md.). PMID 28667017 DOI: 10.1534/G3.117.040345  1
2017 Kavoor AR, Mitra S, Kumar S, Sisodia AK, Jain R. Lipids, aggression, suicidality and impulsivity in drug-naïve/drug-free patients of schizophrenia. Asian Journal of Psychiatry. 27: 129-136. PMID 28558886 DOI: 10.1016/J.Ajp.2017.03.002  1
2017 Kumar S, Wang J, Shanmukhappa SK, Gandhi CR. Toll-Like Receptor 4-Independent Carbon Tetrachloride-Induced Fibrosis and Lipopolysaccharide-Induced Acute Liver Injury in Mice: Role of Hepatic Stellate Cells. The American Journal of Pathology. PMID 28412299 DOI: 10.1016/j.ajpath.2017.01.021  1
2017 Kumar S, Stecher G, Suleski M, Blair Hedges S. TimeTree: A resource for timelines, timetrees, and divergence times. Molecular Biology and Evolution. PMID 28387841 DOI: 10.1093/molbev/msx116  1
2017 Kumar S, Pangtey G, Gupta R, Rehan HS, Gupta LK. Assessment of anti-CarP antibodies, disease activity and quality of life in rheumatoid arthritis patients on conventional and biological disease-modifying antirheumatic drugs. Reumatologia. 55: 4-9. PMID 28386136 DOI: 10.5114/reum.2017.66680  1
2017 Karim S, Nour Eldin HF, Abusamra H, Salem N, Alhathli E, Dudley J, Sanderford M, Scheinfeldt LB, Chaudhary AG, Al-Qahtani MH, Kumar S. Erratum to: e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations. Bmc Genomics. 18: 281. PMID 28385147 DOI: 10.1186/S12864-017-3647-0  1
2017 Protesescu L, Yakunin S, Kumar S, Bär J, Bertolotti F, Masciocchi N, Guagliardi A, Grotevent M, Shorubalko I, Bodnarchuk MI, Shih CJ, Kovalenko MV. Dismantling the "Red Wall" of Colloidal Perovskites: Highly Luminescent Formamidinium and Formamidinium-Cesium Lead Iodide Nanocrystals. Acs Nano. PMID 28231432 DOI: 10.1021/Acsnano.7B00116  1
2017 Kumar S, Adhikari A. Dose-dependent immunomodulating effects of endotoxin in allergic airway inflammation. Innate Immunity. 1753425917690443. PMID 28142300 DOI: 10.1177/1753425917690443  1
2017 Adhikary S, Choudhary D, Ahmad N, Kumar S, Dev K, Mittapelly N, Pandey G, Mishra PR, Maurya R, Trivedi R. Dried and free flowing granules of Spinacia oleracea accelerate bone regeneration and alleviate postmenopausal osteoporosis. Menopause (New York, N.Y.). PMID 28118295 DOI: 10.1097/GME.0000000000000809  1
2017 Katsura Y, Stanley CE, Kumar S, Nei M. The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Molecular Biology and Evolution. PMID 28100791 DOI: 10.1093/molbev/msw272  1
2017 Lin TH, Margossian T, De Marchi M, Thammasack M, Zemlyanov DY, Kumar S, Jagielski J, Zheng LQ, Shih CJ, Zenobi R, De Micheli G, Baudouin D, Gaillardon PE, Copéret C. Low Temperature Wet Conformal Nickel Silicide Deposition for Transistor Technology through an Organometallic Approach. Acs Applied Materials & Interfaces. PMID 28078888 DOI: 10.1021/Acsami.6B13852  1
2016 Idrees D, Kumar S, Rehman SA, Gourinath S, Islam A, Ahmad F, Imtaiyaz Hassan M. Cloning, expression, purification and characterization of human mitochondrial carbonic anhydrase VA. 3 Biotech. 6: 16. PMID 28330086 DOI: 10.1007/s13205-015-0334-1  1
2016 Kumar S, Reddy CR, Prabhakar S. Bilateral putaminal necrosis in a comatose patient with metabolic acidosis. Indian Journal of Critical Care Medicine : Peer-Reviewed, Official Publication of Indian Society of Critical Care Medicine. 20: 745-748. PMID 28149036 DOI: 10.4103/0972-5229.195720  1
2016 Syed AA, Lahiri S, Mohan D, Valicherla GR, Gupta AP, Kumar S, Maurya R, Bora HK, Hanif K, Gayen JR. Cardioprotective Effect of Ulmus wallichiana Planchon in β-Adrenergic Agonist Induced Cardiac Hypertrophy. Frontiers in Pharmacology. 7: 510. PMID 28066255 DOI: 10.3389/fphar.2016.00510  1
2016 Kumar S. MBE Citation Classics (2017 Edition). Molecular Biology and Evolution. PMID 28039385 DOI: 10.1093/molbev/msw281  0.01
2016 Fan X, Yang H, Kumar S, Tumelty KE, Pisarek-Horowitz A, Rasouly HM, Sharma R, Chan S, Tyminski E, Shamashkin M, Belghasem M, Henderson JM, Coyle AJ, Salant DJ, Berasi SP, et al. SLIT2/ROBO2 signaling pathway inhibits nonmuscle myosin IIA activity and destabilizes kidney podocyte adhesion. Jci Insight. 1: e86934. PMID 27882344 DOI: 10.1172/Jci.Insight.86934  1
2016 Mello B, Tao Q, Tamura K, Kumar S. Fast and accurate estimates of divergence times from big data. Molecular Biology and Evolution. PMID 27836983 DOI: 10.1093/molbev/msw247  1
2016 Kumar S. A Report by the Editor-in-Chief for MBE, Volume 32. Molecular Biology and Evolution. PMID 27816909 DOI: 10.1093/molbev/msw233  0.01
2016 Sharma P, Verma Y, Sahu K, Kumar S, Varma AV, Kumawat J, Gupta PK. Human ex-vivo oral tissue imaging using spectral domain polarization sensitive optical coherence tomography. Lasers in Medical Science. PMID 27807650 DOI: 10.1007/s10103-016-2096-3  0.01
2016 Karim S, NourEldin HF, Abusamra H, Salem N, Alhathli E, Dudley J, Sanderford M, Scheinfeldt LB, Kumar S. e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations. Bmc Genomics. 17: 770. PMID 27766955 DOI: 10.1186/s12864-016-3088-1  1
2016 Kumar S, Girish R, Menon AS. Detection of silent myocardial ischaemia in type 2 diabetes mellitus by exercise treadmill test. The Journal of the Association of Physicians of India. 64: 78. PMID 27728011  0.01
2016 Syed AA, Lahiri S, Mohan D, Valicherla GR, Gupta AP, Riyazuddin M, Kumar S, Maurya R, Hanif K, Gayen JR. Evaluation of anti-hypertensive activity of Ulmus wallichiana extract and fraction in SHR, DOCA-salt- and l-NAME-induced hypertensive rats. Journal of Ethnopharmacology. PMID 27720848 DOI: 10.1016/j.jep.2016.10.008  1
2016 Kumar S, Jagielski J, Yakunin S, Rice P, Chiu YC, Wang M, Nedelcu G, Kim Y, Lin S, Santos EJ, Kovalenko MV, Shih CJ. Efficient Blue Electroluminescence Using Quantum-Confined Two-Dimensional Perovskites. Acs Nano. PMID 27684448 DOI: 10.1021/Acsnano.6B05775  1
2016 Singh AK, Shree S, Chattopadhyay S, Kumar S, Gurjar A, Kushwaha S, Kumar H, Trivedi AK, Chattopadhyay N, Maurya R, Ramachandran R, Sanyal S. Small molecule adiponectin receptor agonist GTDF protects against skeletal muscle atrophy. Molecular and Cellular Endocrinology. PMID 27645900 DOI: 10.1016/j.mce.2016.09.013  1
2016 Das J, Khanna S, Kumar S, Khan AZ, Mehta Y. Use of point of care ultrasound for removal of foreign body: "Early screening of the neighborhood is the key". Journal of Anaesthesiology, Clinical Pharmacology. 32: 415-6. PMID 27625512 DOI: 10.4103/0970-9185.173393  1
2016 Rasouly HM, Kumar S, Chan S, Pisarek-Horowitz A, Sharma R, Xi QJ, Nishizaki Y, Higashi Y, Salant DJ, Maas RL, Lu W. Loss of Zeb2 in mesenchyme-derived nephrons causes primary glomerulocystic disease. Kidney International. PMID 27591083 DOI: 10.1016/J.Kint.2016.06.037  1
2016 Kumar S, Wang J, Thomson AW, Gandhi CR. Hepatic stellate cells increase the immunosuppressive function of natural Foxp3+ regulatory T cells via IDO-induced AhR activation. Journal of Leukocyte Biology. PMID 27581538 DOI: 10.1189/Jlb.2A0516-239R  1
2016 Rieger A, Kemter E, Kumar S, Popper B, Aigner B, Wolf E, Wanke R, Blutke A. Missense Mutation of POU Domain Class 3 Transcription Factor 3 in Pou3f3L423P Mice Causes Reduced Nephron Number and Impaired Development of the Thick Ascending Limb of the Loop of Henle. Plos One. 11: e0158977. PMID 27420727 DOI: 10.1371/journal.pone.0158977  1
2016 Verma R, Singh M, Kumar S. Unraveling the Limits of Mitochondrial Control Region to Estimate the Fine Scale Population Genetic Differentiation in Anadromous Fish Tenualosa ilisha. Scientifica. 2016: 2035240. PMID 27313951 DOI: 10.1155/2016/2035240  1
2016 Sinha S, Khan S, Shukla S, Lakra AD, Kumar S, Das G, Maurya R, Meeran SM. Cucurbitacin B inhibits breast cancer metastasis and angiogenesis through VEGF-mediated suppression of FAK/MMP-9 signaling axis. The International Journal of Biochemistry & Cell Biology. PMID 27210504 DOI: 10.1016/j.biocel.2016.05.014  1
2016 Jain N, Saini NS, Kumar S, Rajagopalan M, Chakraborti KL, Jain AK. Correlation of diffusion tensor imaging parameters with neural status in Pott's spine. Sicot-J. 2: 21. PMID 27163110 DOI: 10.1051/sicotj/2016014  1
2016 Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution. PMID 27004904 DOI: 10.1093/molbev/msw054  1
2016 Kumar S, Rathkolb B, Kemter E, Sabrautzki S, Michel D, Adler T, Becker L, Beckers J, Busch DH, Garrett L, Hans W, Hölter SM, Horsch M, Klingenspor M, Klopstock T, et al. Generation and Standardized, Systemic Phenotypic Analysis of Pou3f3L423P Mutant Mice. Plos One. 11: e0150472. PMID 27003440 DOI: 10.1371/journal.pone.0150472  1
2016 Kumar S, Deshpande DD, Nahum AE. Dosimetric response of variable-size cavities in photon-irradiated media and the behaviour of the Spencer-Attix cavity integral with increasing Δ. Physics in Medicine and Biology. 61: 2680-2704. PMID 26976308 DOI: 10.1088/0031-9155/61/7/2680  1
2016 Shukla S, Sinha S, Khan S, Kumar S, Singh K, Mitra K, Maurya R, Meeran SM. Cucurbitacin B inhibits the stemness and metastatic abilities of NSCLC via downregulation of canonical Wnt/β-catenin signaling axis. Scientific Reports. 6: 21860. PMID 26905250 DOI: 10.1038/srep21860  1
2016 Kumar S, Hedges SB. Advances in time estimation methods for molecular data. Molecular Biology and Evolution. PMID 26882983 DOI: 10.1093/molbev/msw026  1
2016 Kumar S, Wang J, Rani R, Gandhi CR. Hepatic Deficiency of Augmenter of Liver Regeneration Exacerbates Alcohol-Induced Liver Injury and Promotes Fibrosis in Mice. Plos One. 11: e0147864. PMID 26808690 DOI: 10.1371/journal.pone.0147864  1
2016 Kumar S, Nahum AE. Secondary bremsstrahlung and the energy-conservation aspects of kerma in photon-irradiated media. Physics in Medicine and Biology. 61: 1389-1402. PMID 26797487 DOI: 10.1088/0031-9155/61/3/1389  1
2015 Jain A, Kumar S, Aggarwal AN, Jajodia N. Augmentation of bone healing in delayed and atrophic nonunion of fractures of long bones by partially decalcified bone allograft (decal bone). Indian Journal of Orthopaedics. 49: 637-42. PMID 26806971 DOI: 10.4103/0019-5413.168764  1
2015 Kumar S. MBE Citation Classics (2016 Edition). Molecular Biology and Evolution. PMID 26709393 DOI: 10.1093/molbev/msv279  1
2015 Kumar A, Butler BM, Kumar S, Ozkan SB. Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine. Current Opinion in Structural Biology. PMID 26684487 DOI: 10.1016/J.Sbi.2015.11.002  1
2015 Miura S, Tate S, Kumar S. Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins. Evolutionary Bioinformatics Online. 11: 245-251. PMID 26604664 DOI: 10.4137/Ebo.S30594  1
2015 Kumar S. A Report by the Editor-in-Chief for MBE, Volume 31. Molecular Biology and Evolution. PMID 26576849 DOI: 10.1093/molbev/msv244  0.01
2015 Sharma R, Aggarwal AN, Bhatt S, Kumar S, Bhargava SK. Outcome of low level lasers versus ultrasonic therapy in de Quervain's tenosynovitis. Indian Journal of Orthopaedics. 49: 542-8. PMID 26538761 DOI: 10.4103/0019-5413.164050  1
2015 Hamidullah, Kumar R, Saini KS, Kumar A, Kumar S, Ramakrishna E, Maurya R, Konwar R, Chattopadhyay N. Quercetin-6-C-β-D-glucopyranoside, natural analogue of quercetin exhibits anti-prostate cancer activity by inhibiting Akt-mTOR pathway via aryl hydrocarbon receptor. Biochimie. PMID 26476001 DOI: 10.1016/j.biochi.2015.10.012  1
2015 Liu L, Tamura K, Sanderford M, Gray VE, Kumar S. A Molecular Evolutionary Reference for the Human Variome. Molecular Biology and Evolution. PMID 26464126 DOI: 10.1093/Molbev/Msv198  1
2015 Kumar S, Fenwick JD, Underwood TS, Deshpande DD, Scott AJ, Nahum AE. Breakdown of Bragg-Gray behaviour for low-density detectors under electronic disequilibrium conditions in small megavoltage photon fields. Physics in Medicine and Biology. 60: 8187-8212. PMID 26439724 DOI: 10.1088/0031-9155/60/20/8187  1
2015 Kumar S, Sinha VR. Design, Development and Characterization of Topical Microemulsions of 5-Fluorouracil for the Treatment of Non Melanoma Skin Cancer and its Precursor Lesions. Anti-Cancer Agents in Medicinal Chemistry. PMID 26343142  1
2015 Dhammi IK, Ul Haq R, Kumar S. Prophylactic antibiotics in orthopedic surgery: Controversial issues in its use. Indian Journal of Orthopaedics. 49: 373-6. PMID 26229155 DOI: 10.4103/0019-5413.159556  1
2015 Akhtar MJ, Alhadlaq HA, Kumar S, Alrokayan SA, Ahamed M. Selective cancer-killing ability of metal-based nanoparticles: implications for cancer therapy. Archives of Toxicology. 89: 1895-907. PMID 26223318 DOI: 10.1007/s00204-015-1570-1  1
2015 Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. American Journal of Botany. 102: 1115-27. PMID 26199368 DOI: 10.3732/Ajb.1500184  1
2015 Jou JH, Kumar S, Singh M, Chen YH, Chen CC, Lee MT. Carrier Modulation Layer-Enhanced Organic Light-Emitting Diodes. Molecules (Basel, Switzerland). 20: 13005-30. PMID 26193252 DOI: 10.3390/Molecules200713005  1
2015 Kumar S, Srinivasan P, Sharma SD, Saxena SK, Bakshi AK, Dash A, Babu DA, Sharma DN. Determination of surface dose rate of indigenous (32)P patch brachytherapy source by experimental and Monte Carlo methods. Applied Radiation and Isotopes : Including Data, Instrumentation and Methods For Use in Agriculture, Industry and Medicine. 103: 120-127. PMID 26086681 DOI: 10.1016/j.apradiso.2015.06.003  1
2015 Jou JH, Kumar S, An CC, Singh M, Yu HH, Hsieh CY, Lin YX, Sung CF, Wang CW. Enabling a blue-hazard free general lighting based on candle light-style OLED. Optics Express. 23: A576-81. PMID 26072882 DOI: 10.1364/Oe.23.00A576  1
2015 Abbas S, Jain AK, Saini NS, Kumar S, Mukunth R, Kumar J, Kumar P, Kaur P. Diffusion tensor imaging observation in Pott's spine with or without neurological deficit. Indian Journal of Orthopaedics. 49: 289-99. PMID 26015628 DOI: 10.4103/0019-5413.156195  1
2015 Dhammi IK, Rehan-Ul-Haq, Kumar S. Graft choices for anterior cruciate ligament reconstruction. Indian Journal of Orthopaedics. 49: 127-8. PMID 26015598 DOI: 10.4103/0019-5413.152393  1
2015 Dubey KK, Kumar S, Dixit D, Kumar P, Kumar D, Jawed A, Haque S. Implication of Industrial Waste for Biomass and Lipid Production in Chlorella minutissima Under Autotrophic, Heterotrophic, and Mixotrophic Grown Conditions. Applied Biochemistry and Biotechnology. PMID 25971804 DOI: 10.1007/s12010-015-1663-6  1
2015 Gerek NZ, Liu L, Gerold K, Biparva P, Thomas ED, Kumar S. Evolutionary Diagnosis of non-synonymous variants involved in differential drug response. Bmc Medical Genomics. 8: S6. PMID 25952014 DOI: 10.1186/1755-8794-8-S1-S6  1
2015 Konidena RK, Thomas KR, Kumar S, Wang YC, Li CJ, Jou JH. Phenothiazine decorated carbazoles: effect of substitution pattern on the optical and electroluminescent characteristics. The Journal of Organic Chemistry. 80: 5812-23. PMID 25951296 DOI: 10.1021/Acs.Joc.5B00787  1
2015 Das J, Khanna S, Kumar S, Mehta Y. Blood transfusion practices in liver transplantation. Indian Journal of Anaesthesia. 59: 266-7. PMID 25937665 DOI: 10.4103/0019-5049.155016  1
2015 Filipski A, Tamura K, Billing-Ross P, Murillo O, Kumar S. Phylogenetic placement of metagenomic reads using the minimum evolution principle. Bmc Genomics. 16: S13. PMID 25923672 DOI: 10.1186/1471-2164-16-S1-S13  1
2015 Shukla S, Khan S, Kumar S, Sinha S, Farhan M, Bora HK, Maurya R, Meeran SM. Cucurbitacin B Alters the Expression of Tumor-Related Genes by Epigenetic Modifications in NSCLC and Inhibits NNK-Induced Lung Tumorigenesis. Cancer Prevention Research (Philadelphia, Pa.). 8: 552-62. PMID 25813524 DOI: 10.1158/1940-6207.CAPR-14-0286  1
2015 Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. A Protocol for Diagnosing the Effect of Calibration Priors on Posterior Time Estimates: A Case Study for the Cambrian Explosion of Animal Phyla. Molecular Biology and Evolution. 32: 1907-12. PMID 25808541 DOI: 10.1093/Molbev/Msv075  1
2015 Hedges SB, Marin J, Suleski M, Paymer M, Kumar S. Tree of life reveals clock-like speciation and diversification. Molecular Biology and Evolution. 32: 835-45. PMID 25739733 DOI: 10.1093/molbev/msv037  1
2015 Ali D, Ali H, Alarifi S, Kumar S, Serajuddin M, Mashih AP, Ahmed M, Khan M, Adil SF, Shaik MR, Ansari AA. Impairment of DNA in a freshwater gastropod (Lymnea luteola L.) after exposure to titanium dioxide nanoparticles. Archives of Environmental Contamination and Toxicology. 68: 543-52. PMID 25661047 DOI: 10.1007/s00244-015-0132-0  1
2015 Khan MP, Singh AK, Joharapurkar AA, Yadav M, Shree S, Kumar H, Gurjar A, Mishra JS, Tiwari MC, Nagar GK, Kumar S, Ramachandran R, Sharan A, Jain MR, Trivedi AK, et al. Pathophysiological Mechanism of Bone Loss in Type 2 Diabetes Involves Inverse Regulation of Osteoblast Function by PGC-1α and Skeletal Muscle Atrogenes: AdipoR1 as a Potential Target for Reversing Diabetes-Induced Osteopenia. Diabetes. 64: 2609-23. PMID 25633418 DOI: 10.2337/db14-1611  1
2015 Kumar S, Deshpande DD, Nahum AE. Monte-Carlo-derived insights into dose-kerma-collision kerma inter-relationships for 50 keV-25 MeV photon beams in water, aluminum and copper. Physics in Medicine and Biology. 60: 501-19. PMID 25548933 DOI: 10.1088/0031-9155/60/2/501  1
2015 Purohit A, Aggarwal M, Kumar S, Seth T, Mishra P, Mahapatra M, Saxena R, Sharma R, Singh PK, Venkateshan S. Spontaneous remission of adult acute lymphoblastic leukemia: a very rare event. Indian Journal of Hematology & Blood Transfusion : An Official Journal of Indian Society of Hematology and Blood Transfusion. 31: 159-60. PMID 25548467 DOI: 10.1007/s12288-014-0351-y  1
2015 Butler BM, Gerek ZN, Kumar S, Ozkan SB. Conformational dynamics of nonsynonymous variants at protein interfaces reveals disease association. Proteins. 83: 428-35. PMID 25546381 DOI: 10.1002/prot.24748  1
2015 Kumar S. MBE citation classics (2015 edition). Molecular Biology and Evolution. 32: 1-3. PMID 25527615 DOI: 10.1093/molbev/msu339  1
2015 Gandhi CR, Chaillet JR, Nalesnik MA, Kumar S, Dangi A, Demetris AJ, Ferrell R, Wu T, Divanovic S, Stankeiwicz T, Shaffer B, Stolz DB, Harvey SA, Wang J, Starzl TE. Liver-specific deletion of augmenter of liver regeneration accelerates development of steatohepatitis and hepatocellular carcinoma in mice. Gastroenterology. 148: 379-391.e4. PMID 25448926 DOI: 10.1053/J.Gastro.2014.10.008  1
2015 Verma S, Kumar S, Gupta VP, Gourinath S, Bhatnagar S, Bhatnagar R. Structural basis of Bacillus anthracis MoxXT disruption and the modulation of MoxT ribonuclease activity by rationally designed peptides. Journal of Biomolecular Structure & Dynamics. 33: 606-24. PMID 24650157 DOI: 10.1080/07391102.2014.899924  1
2014 Aggarwal A, Jain A, Jajoida N, Nand R, Kumar S, Kumar C. Fate of kyphosis in tuberculosis of subaxial cervical spine treated non-operatively. Acta Orthopaedica Belgica. 80: 451-6. PMID 26280715  1
2014 Tiwari U, Ramachandran VG, Das S, Kumar S. Interleukin-3 and interleukin-17 do not play a dynamic role in the immunopathogenesis of osteoarticular tuberculosis. The Indian Journal of Tuberculosis. 61: 142-7. PMID 25509937  1
2014 Kapoor A, Kumar S. Cancer stem cell: A rogue responsible for tumor development and metastasis. Indian Journal of Cancer. 51: 282-289. PMID 25494123 DOI: 10.4103/0019-509X.146794  0.01
2014 Zhou X, Wang B, Pan Q, Zhang J, Kumar S, Sun X, Liu Z, Pan H, Lin Y, Liu G, Zhan W, Li M, Ren B, Ma X, Ruan H, et al. Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history. Nature Genetics. 46: 1303-10. PMID 25362486 DOI: 10.1038/Ng.3137  1
2014 Kumar S. Society for Molecular Biology and Evolution a report by Editor-in-Chief MBE Volume 30. Molecular Biology and Evolution. 31: 3373-4. PMID 25323574 DOI: 10.1093/molbev/msu274  1
2014 Dhammi IK, Kumar S. Medical subject headings (MeSH) terms. Indian Journal of Orthopaedics. 48: 443-4. PMID 25298548 DOI: 10.4103/0019-5413.139827  1
2014 Kumar S, Khodoun M, Kettleson EM, McKnight C, Reponen T, Grinshpun SA, Adhikari A. Glyphosate-rich air samples induce IL-33, TSLP and generate IL-13 dependent airway inflammation. Toxicology. 325: 42-51. PMID 25172162 DOI: 10.1016/J.Tox.2014.08.008  1
2014 Kumar S, Ye J, Liu L. Reply to: "Proper reporting of predictor performance". Nature Methods. 11: 781-2. PMID 25075901 DOI: 10.1038/Nmeth.3039  1
2014 Kumar S, Kumar N, Alam N, Gourinath S. Crystal structure of serine acetyl transferase from Brucella abortus and its complex with coenzyme A. Biochimica Et Biophysica Acta. 1844: 1741-8. PMID 25058332 DOI: 10.1016/j.bbapap.2014.07.009  1
2014 Filipski A, Murillo O, Freydenzon A, Tamura K, Kumar S. Prospects for building large timetrees using molecular data with incomplete gene coverage among species. Molecular Biology and Evolution. 31: 2542-50. PMID 24974376 DOI: 10.1093/Molbev/Msu200  1
2014 Amaraneni SR, Kumar S, Gourinath S. Biophysical aspects of lysozyme adduct with monocrotophos. Analytical and Bioanalytical Chemistry. 406: 5477-85. PMID 24969463 DOI: 10.1007/s00216-014-7953-y  1
2014 Bhaker P, Mohan H, Handa U, Kumar S. Role of intraoperative pathology consultation in skeletal tumors and tumor-like lesions. Sarcoma. 2014: 902104. PMID 24955018 DOI: 10.1155/2014/902104  1
2014 Kumar S, Liu L. No positive selection for G allele in a p53 response element in Europeans. Cell. 157: 1497-9. PMID 24949959 DOI: 10.1016/J.Cell.2014.05.033  1
2014 Dhammi IK, Kumar S. Osteosarcoma: A journey from amputation to limb salvage. Indian Journal of Orthopaedics. 48: 233-4. PMID 24932025 DOI: 10.4103/0019-5413.132486  1
2014 Singh S, Singh H, Srivastava A, Tandon P, Sinha K, Bharti P, Kumar S, Kumar P, Maurya R. Study of conformational stability, structural, electronic and charge transfer properties of cladrin using vibrational spectroscopy and DFT calculations. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 132: 615-28. PMID 24892542 DOI: 10.1016/j.saa.2014.04.182  1
2014 Kumar S, Datta D, Sharma SD, Chourasiya G, Babu DA, Sharma DN. Estimation of distance error by fuzzy set theory required for strength determination of HDR (192)Ir brachytherapy sources. Journal of Medical Physics / Association of Medical Physicists of India. 39: 85-92. PMID 24872605 DOI: 10.4103/0971-6203.131281  1
2014 Singh AK, Joharapurkar AA, Khan MP, Mishra JS, Singh N, Yadav M, Hossain Z, Khan K, Kumar S, Dhanesha NA, Mishra DP, Maurya R, Sharma S, Jain MR, Trivedi AK, et al. Orally active osteoanabolic agent GTDF binds to adiponectin receptors, with a preference for AdipoR1, induces adiponectin-associated signaling, and improves metabolic health in a rodent model of diabetes. Diabetes. 63: 3530-44. PMID 24848063 DOI: 10.2337/db13-1619  1
2014 Akhtar MJ, Ahamed M, Alhadlaq HA, Alrokayan SA, Kumar S. Targeted anticancer therapy: overexpressed receptors and nanotechnology. Clinica Chimica Acta; International Journal of Clinical Chemistry. 436: 78-92. PMID 24836529 DOI: 10.1016/j.cca.2014.05.004  1
2014 Das J, Kumar S, Khanna S, Mehta Y. Are we causing the recurrence-impact of perioperative period on long-term cancer prognosis: Review of current evidence and practice. Journal of Anaesthesiology, Clinical Pharmacology. 30: 153-9. PMID 24803749 DOI: 10.4103/0970-9185.129996  1
2014 Kumar S, Kumar N. Unusual presentation of Wegener's granulomatosis as a gastric ulcer. The Journal of the Arkansas Medical Society. 110: 226-7. PMID 24783360  1
2014 Gray VE, Liu L, Nirankari R, Hornbeck PV, Kumar S. Signatures of natural selection on mutations of residues with multiple posttranslational modifications. Molecular Biology and Evolution. 31: 1641-5. PMID 24739307 DOI: 10.1093/Molbev/Msu137  1
2014 Pradhan JK, Kumar S. Informal e-waste recycling: environmental risk assessment of heavy metal contamination in Mandoli industrial area, Delhi, India. Environmental Science and Pollution Research International. 21: 7913-28. PMID 24652574 DOI: 10.1007/s11356-014-2713-2  0.01
2014 Adhikari A, Kettleson EM, Vesper S, Kumar S, Popham DL, Schaffer C, Indugula R, Chatterjee K, Allam KK, Grinshpun SA, Reponen T. Dustborne and airborne Gram-positive and Gram-negative bacteria in high versus low ERMI homes. The Science of the Total Environment. 482: 92-9. PMID 24642096 DOI: 10.1016/J.Scitotenv.2014.02.110  1
2014 Das J, Kumar S, Khanna S, Mehta Y. Re: Mani Menon, Akshay Sood, Mahendra Bhandari, et al. Robotic kidney transplantation with regional hypothermia: a step-by-step description of the vAttikuti Urology Institute-Medanta Technique (IDEAL Phase 2a). Eur Urol 2014;65:991-1000. European Urology. 65: e87. PMID 24589332 DOI: 10.1016/j.eururo.2014.02.037  1
2014 Kumar R, Dhanawat M, Kumar S, Singh BN, Pandit JK, Sinha VR. Carbon nanotubes: a potential concept for drug delivery applications. Recent Patents On Drug Delivery & Formulation. 8: 12-26. PMID 24456215 DOI: 10.2174/1872211308666140124095745  1
2014 Stecher G, Liu L, Sanderford M, Peterson D, Tamura K, Kumar S. MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation. Bioinformatics (Oxford, England). 30: 1305-7. PMID 24413669 DOI: 10.1093/bioinformatics/btu018  1
2014 Montiel I, Konikoff C, Braun B, Packard M, Gramates SL, Sun Q, Ye J, Kumar S. myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos. Bioinformatics (Oxford, England). 30: 1319-21. PMID 24413523 DOI: 10.1093/Bioinformatics/Btu007  1
2014 Ali D, Yadav PG, Kumar S, Ali H, Alarifi S, Harrath AH. Sensitivity of freshwater pulmonate snail Lymnaea luteola L., to silver nanoparticles. Chemosphere. 104: 134-40. PMID 24309155 DOI: 10.1016/j.chemosphere.2013.10.081  1
2014 Yuan L, Pan C, Ji S, McCutchan M, Zhou ZH, Newfeld SJ, Kumar S, Ye J. Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression. Bioinformatics (Oxford, England). 30: 266-73. PMID 24300439 DOI: 10.1093/Bioinformatics/Btt648  1
2014 Kumar S. Editor's message for 2014. Molecular Biology and Evolution. 31: 4-5. PMID 24273321 DOI: 10.1093/molbev/mst216  1
2014 Kumar S, Naqvi RA, Ali R, Rani R, Khanna N, Rao DN. FoxP3 provides competitive fitness to CD4⁺CD25⁺ T cells in leprosy patients via transcriptional regulation. European Journal of Immunology. 44: 431-9. PMID 24214631 DOI: 10.1002/eji.201343649  1
2014 Singh H, Singh S, Srivastava A, Tandon P, Bharti P, Kumar S, Maurya R. Conformational analysis and vibrational study of daidzein by using FT-IR and FT-Raman spectroscopies and DFT calculations. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 120: 405-15. PMID 24211623 DOI: 10.1016/j.saa.2013.10.045  1
2013 Dhammi IK, Kumar S. Process of peer review continues. Indian Journal of Orthopaedics. 47: 537-9. PMID 24379456 DOI: 10.4103/0019-5413.121568  1
2013 Zhang W, Feng D, Li R, Chernikov A, Chrisochoides N, Osgood C, Konikoff C, Newfeld S, Kumar S, Ji S. A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. Bmc Bioinformatics. 14: 372. PMID 24373308 DOI: 10.1186/1471-2105-14-372  1
2013 Akhtar MJ, Kumar S, Alhadlaq HA, Alrokayan SA, Abu-Salah KM, Ahamed M. Dose-dependent genotoxicity of copper oxide nanoparticles stimulated by reactive oxygen species in human lung epithelial cells. Toxicology and Industrial Health. PMID 24311626 DOI: 10.1177/0748233713511512  1
2013 Sun Q, Muckatira S, Yuan L, Ji S, Newfeld S, Kumar S, Ye J. Image-level and group-level models for Drosophila gene expression pattern annotation. Bmc Bioinformatics. 14: 350. PMID 24299119 DOI: 10.1186/1471-2105-14-350  1
2013 Jain AK, Kumar S. Bone and Joint day - India. Indian Journal of Orthopaedics. 47: 435-6. PMID 24133300 DOI: 10.4103/0019-5413.118196  1
2013 Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution. 30: 2725-9. PMID 24132122 DOI: 10.1093/Molbev/Mst197  1
2013 Kumar S, Reddy CR, Prabhakar S. Striatal toe. Annals of Indian Academy of Neurology. 16: 304-5. PMID 24101805 DOI: 10.4103/0972-2327.116898  1
2013 Kumar SC, Ramesh N, Sreevatsan S, Joseph B, Alle P, Belani KG, Osterholm MT. Knowledge, attitudes, and poultry-handling practices of poultry workers in relation to avian influenza in India. Indian Journal of Occupational and Environmental Medicine. 17: 16-21. PMID 24082643 DOI: 10.4103/0019-5278.116368  1
2013 Gilbert JDJ, Acquisti C, Martinson HM, Elser JJ, Kumar S, Fagan WF. GRASP [Genomic Resource Access for Stoichioproteomics]: Comparative explorations of the atomic content of 12 Drosophila proteomes Bmc Genomics. 14. PMID 24007337 DOI: 10.1186/1471-2164-14-599  1
2013 Rastogi G, Gurram RN, Bhalla A, Gonzalez R, Bischoff KM, Hughes SR, Kumar S, Sani RK. Presence of glucose, xylose, and glycerol fermenting bacteria in the deep biosphere of the former Homestake gold mine, South Dakota. Frontiers in Microbiology. 4: 18. PMID 23919089 DOI: 10.3389/Fmicb.2013.00018  1
2013 Kumar S, Naqvi RA, Ali R, Rani R, Khanna N, Rao DN. CD4+CD25+ T regs with acetylated FoxP3 are associated with immune suppression in human leprosy. Molecular Immunology. 56: 513-20. PMID 23911408 DOI: 10.1016/j.molimm.2013.04.015  1
2013 Kumar S, Naqvi RA, Bhat AA, Rani R, Ali R, Agnihotri A, Khanna N, Rao DN. IL-10 production from dendritic cells is associated with DC SIGN in human leprosy. Immunobiology. 218: 1488-96. PMID 23816300 DOI: 10.1016/j.imbio.2013.05.004  1
2013 Mishra K, Sharma RC, Kumar S. Contamination profile of DDT and HCH in surface sediments and their spatial distribution from North-East India. Ecotoxicology and Environmental Safety. 95: 113-22. PMID 23810211 DOI: 10.1016/j.ecoenv.2013.05.029  1
2013 Wellensiek BP, Larsen AC, Stephens B, Kukurba K, Waern K, Briones N, Liu L, Snyder M, Jacobs BL, Kumar S, Chaput JC. Genome-wide profiling of human cap-independent translation-enhancing elements. Nature Methods. 10: 747-50. PMID 23770754 DOI: 10.1038/Nmeth.2522  1
2013 Nevin Gerek Z, Kumar S, Banu Ozkan S. Structural dynamics flexibility informs function and evolution at a proteome scale. Evolutionary Applications. 6: 423-33. PMID 23745135 DOI: 10.1111/Eva.12052  1
2013 Kumar S. Venous thromboembolism in major lower limb orthopedic surgery. Indian Journal of Orthopaedics. 47: 115-6. PMID 23682171 DOI: 10.4103/0019-5413.108870  0.01
2013 Banerjee A, Dahiya M, Anand MT, Kumar S. Inhibition of proliferation of cervical and leukemic cancer cells by penicillin G. Asian Pacific Journal of Cancer Prevention : Apjcp. 14: 2127-30. PMID 23679330  0.01
2013 Dawar C, Jain S, Kumar S. Insight into the 3D structure of ADP-glucose pyrophosphorylase from rice (Oryza sativa L.). Journal of Molecular Modeling. 19: 3351-67. PMID 23674369 DOI: 10.1007/s00894-013-1851-7  0.01
2013 Fenwick JD, Kumar S, Scott AJ, Nahum AE. Using cavity theory to describe the dependence on detector density of dosimeter response in non-equilibrium small fields. Physics in Medicine and Biology. 58: 2901-23. PMID 23574749 DOI: 10.1088/0031-9155/58/9/2901  1
2013 Jain AK, Kumar S. Indian Journal of Orthopaedics: Journey continues. Indian Journal of Orthopaedics. 47: 1-5. PMID 23533296 DOI: 10.4103/0019-5413.106881  1
2013 Lavania S, Praharaj SK, Bains HS, Kumar S, Rathore DM, Mohanty S, Nayak M. Does tardive dysmentia really exist? The Journal of Neuropsychiatry and Clinical Neurosciences. 25: 58-62. PMID 23487194 DOI: 10.1176/appi.neuropsych.12020024  1
2013 Varghese GM, Mathew A, Kumar S, Abraham OC, Trowbridge P, Mathai E. Differential diagnosis of scrub typhus meningitis from bacterial meningitis using clinical and laboratory features. Neurology India. 61: 17-20. PMID 23466834 DOI: 10.4103/0028-3886.107919  1
2013 Ali R, Kumar S, Naqvi RA, Rao DN. B and T cell epitope mapping and study the humoral and cell mediated immune response to B-T constructs of YscF antigen of Yersinia pestis. Comparative Immunology, Microbiology and Infectious Diseases. 36: 365-78. PMID 23465748 DOI: 10.1016/j.cimid.2013.01.002  1
2013 Liu L, Kumar S. Evolutionary balancing is critical for correctly forecasting disease-associated amino acid variants. Molecular Biology and Evolution. 30: 1252-7. PMID 23462317 DOI: 10.1093/Molbev/Mst037  1
2012 Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. Estimating divergence times in large molecular phylogenies. Proceedings of the National Academy of Sciences of the United States of America. 109: 19333-8. PMID 23129628 DOI: 10.1073/Pnas.1213199109  1
2012 Konikoff CE, Karr TL, McCutchan M, Newfeld SJ, Kumar S. Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 241: 150-60. PMID 21960044 DOI: 10.1002/dvdy.22749  1
2012 Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K. Statistics and truth in phylogenomics. Molecular Biology and Evolution. 29: 457-72. PMID 21873298 DOI: 10.1093/molbev/msr202  1
2011 Kumar S, Konikoff C, Van Emden B, Busick C, Davis KT, Ji S, Wu LW, Ramos H, Brody T, Panchanathan S, Ye J, Karr TL, Gerold K, McCutchan M, Newfeld SJ. FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. Bioinformatics (Oxford, England). 27: 3319-20. PMID 21994220 DOI: 10.1093/Bioinformatics/Btr567  1
2011 Kumar S, Dudley JT, Filipski A, Liu L. Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations. Trends in Genetics : Tig. 27: 377-86. PMID 21764165 DOI: 10.1016/J.Tig.2011.06.004  1
2011 Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution. 28: 2731-9. PMID 21546353 DOI: 10.1093/Molbev/Msr121  1
2011 Battistuzzi FU, Billing-Ross P, Paliwal A, Kumar S. Fast and slow implementations of relaxed-clock methods show similar patterns of accuracy in estimating divergence times. Molecular Biology and Evolution. 28: 2439-42. PMID 21498604 DOI: 10.1093/molbev/msr100  1
2011 Pacheco MA, Battistuzzi FU, Lentino M, Aguilar RF, Kumar S, Escalante AA. Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Molecular Biology and Evolution. 28: 1927-42. PMID 21242529 DOI: 10.1093/Molbev/Msr014  1
2010 Stone AC, Battistuzzi FU, Kubatko LS, Perry GH, Trudeau E, Lin H, Kumar S. More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 3277-88. PMID 20855302 DOI: 10.1098/Rstb.2010.0096  1
2010 Battistuzzi FU, Filipski A, Hedges SB, Kumar S. Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals. Molecular Biology and Evolution. 27: 1289-300. PMID 20093431 DOI: 10.1093/Molbev/Msq014  1
2009 Marco A, Konikoff C, Karr TL, Kumar S. Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster. Bioinformatics (Oxford, England). 25: 2473-7. PMID 19633094 DOI: 10.1093/Bioinformatics/Btp462  1
2009 Kumar S, Suleski MP, Markov GJ, Lawrence S, Marco A, Filipski AJ. Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Research. 19: 1562-9. PMID 19546171 DOI: 10.1101/Gr.091991.109  1
2008 Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics. 9: 299-306. PMID 18417537 DOI: 10.1093/Bib/Bbn017  1
2007 Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 24: 1596-9. PMID 17488738 DOI: 10.1093/molbev/msm092  1
2007 Kumar S, Filipski A. Multiple sequence alignment: in pursuit of homologous DNA positions. Genome Research. 17: 127-35. PMID 17272647 DOI: 10.1101/Gr.5232407  1
2005 Kumar S, Filipski A, Swarna V, Walker A, Hedges SB. Placing confidence limits on the molecular age of the human-chimpanzee divergence. Proceedings of the National Academy of Sciences of the United States of America. 102: 18842-7. PMID 16365310 DOI: 10.1073/Pnas.0509585102  1
2005 Gadagkar SR, Kumar S. Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous Molecular Biology and Evolution. 22: 2139-2141. PMID 16014870 DOI: 10.1093/molbev/msi212  1
2005 Gadagkar SR, Rosenberg MS, Kumar S. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 64-74. PMID 15593277 DOI: 10.1002/Jez.B.21026  1
2004 Gurunathan R, Van Emden B, Panchanathan S, Kumar S. Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations. Bmc Bioinformatics. 5: 202. PMID 15603586 DOI: 10.1186/1471-2105-5-202  1
2004 Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics. 5: 150-63. PMID 15260895 DOI: 10.1093/Bib/5.2.150  1
2004 Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the United States of America. 101: 11030-5. PMID 15258291 DOI: 10.1073/pnas.0404206101  1
2003 Rosenberg MS, Subramanian S, Kumar S. Patterns of transitional mutation biases within and among mammalian genomes. Molecular Biology and Evolution. 20: 988-93. PMID 12716982 DOI: 10.1093/Molbev/Msg113  1
2003 Rosenberg MS, Kumar S. Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference. Molecular Biology and Evolution. 20: 610-21. PMID 12679548 DOI: 10.1093/Molbev/Msg067  1
2003 Rosenberg MS, Kumar S. Taxon sampling, bioinformatics, and phylogenomics. Systematic Biology. 52: 119-24. PMID 12554445 DOI: 10.1080/10635150390132894  1
2002 Kumar S, Jayaraman K, Panchanathan S, Gurunathan R, Marti-Subirana A, Newfeld SJ. BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development. Genetics. 162: 2037-47. PMID 12524369  1
2002 Jiang Z, Melville JS, Cao H, Kumar S, Filipski A, Gibbins AM. Measuring conservation of contiguous sets of autosomal markers on bovine and porcine genomes in relation to the map of the human genome. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 769-76. PMID 12175081 DOI: 10.1139/G02-038  1
2001 Rosenberg MS, Kumar S. Incomplete taxon sampling is not a problem for phylogenetic inference. Proceedings of the National Academy of Sciences of the United States of America. 98: 10751-6. PMID 11526218 DOI: 10.1073/Pnas.191248498  1
2001 Rosenberg MS, Kumar S. Traditional phylogenetic reconstruction methods reconstruct shallow and deep evolutionary relationships equally well. Molecular Biology and Evolution. 18: 1823-7. PMID 11504861 DOI: 10.1093/Oxfordjournals.Molbev.A003969  1
1998 Nei M, Kumar S, Takahashi K. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proceedings of the National Academy of Sciences of the United States of America. 95: 12390-7. PMID 9770497 DOI: 10.1073/pnas.95.21.12390  1
1998 Yeager M, Kumar S, Hughes AL. Sequence convergence in the peptide-binding region of primate and rodent MHC class Ib molecules. Molecular Biology and Evolution. 14: 1035-41. PMID 9335143 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A025709  0.32
1997 Zhang J, Kumar S, Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Molecular Biology and Evolution. 14: 1335-8. PMID 9402743 DOI: 10.1093/Oxfordjournals.Molbev.A025743  1
1997 Balczarek KA, Lai ZC, Kumar S. Evolution and functional diversification of the paired box (Pax) DNA- binding domains Molecular Biology and Evolution. 14: 829-842. PMID 9254921 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A025824  1
1997 Zhang J, Kumar S. Detection of convergent and parallel evolution at the amino acid sequence level. Molecular Biology and Evolution. 14: 527-36. PMID 9159930 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A025789  0.4
1995 Rzhetsky A, Kumar S, Nei M. Four-cluster analysis: a simple method to test phylogenetic hypotheses. Molecular Biology and Evolution. 12: 163-7. PMID 7877491 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040185  1
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