Valley J. Stewart - Publications

Affiliations: 
Biochemistry and Molecular Biology University of California, Davis, Davis, CA 
Area:
Microbiology Biology, Molecular Biology

72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Joe A, Stewart V, Ronald PC. The HrpX Protein Activates Synthesis of the RaxX Sulfopeptide, Required for Activation of XA21-Mediated Immunity to pv. . Molecular Plant-Microbe Interactions : Mpmi. MPMI05210124R. PMID 34731589 DOI: 10.1094/MPMI-05-21-0124-R  0.358
2019 Luu RA, Schomer RA, Brunton CN, Truong R, Ta AP, Tan WA, Parales JV, Wang YJ, Huo YW, Liu SJ, Ditty JL, Stewart V, Parales RE. Hybrid Two-Component Sensors for Identification of Bacterial Chemoreceptor Function. Applied and Environmental Microbiology. PMID 31492670 DOI: 10.1128/Aem.01626-19  0.331
2019 Luu DD, Joe A, Chen Y, Parys K, Bahar O, Pruitt R, Chan LJG, Petzold CJ, Long K, Adamchak C, Stewart V, Belkhadir Y, Ronald PC. Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor. Proceedings of the National Academy of Sciences of the United States of America. PMID 30948631 DOI: 10.1073/Pnas.1818275116  0.301
2019 Liu F, Mcdonald M, Schwessinger B, Joe A, Pruitt R, Erickson T, Zhao X, Stewart V, Ronald PC. Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity. Molecular Plant Pathology. PMID 30773771 DOI: 10.1111/Mpp.12783  0.35
2015 Huynh TN, Lin HY, Noriega CE, Lin AV, Stewart V. Cross Talk Inhibition Nullified by a Receiver Domain Missense Substitution. Journal of Bacteriology. 197: 3294-306. PMID 26260457 DOI: 10.1128/Jb.00436-15  0.593
2015 Huynh TN, Chen LL, Stewart V. Sensor-response regulator interactions in a cross-regulated signal transduction network. Microbiology (Reading, England). PMID 25873583 DOI: 10.1099/Mic.0.000092  0.427
2014 Stewart V. The HAMP signal-conversion domain: static two-state or dynamic three-state? Molecular Microbiology. 91: 853-857. PMID 24417364 DOI: 10.1111/Mmi.12516  0.339
2013 Huynh TN, Noriega CE, Stewart V. Missense substitutions reflecting regulatory control of transmitter phosphatase activity in two-component signalling. Molecular Microbiology. 88: 459-72. PMID 23517441 DOI: 10.1111/Mmi.12195  0.441
2012 Boudes M, Lazar N, Graille M, Durand D, Gaidenko TA, Stewart V, van Tilbeurgh H. The structure of the NasR transcription antiterminator reveals a one-component system with a NIT nitrate receptor coupled to an ANTAR RNA-binding effector. Molecular Microbiology. 85: 431-44. PMID 22690729 DOI: 10.1111/J.1365-2958.2012.08111.X  0.444
2012 Stewart V, Tilbeurgh Hv. Found: the elusive ANTAR transcription antiterminator. Plos Genetics. 8. PMID 22685424 DOI: 10.1371/Journal.Pgen.1002773  0.376
2011 Huynh TN, Stewart V. Negative control in two-component signal transduction by transmitter phosphatase activity. Molecular Microbiology. 82: 275-86. PMID 21895797 DOI: 10.1111/J.1365-2958.2011.07829.X  0.4
2011 Jones SA, Gibson T, Maltby RC, Chowdhury FZ, Stewart V, Cohen PS, Conway T. Anaerobic respiration of Escherichia coli in the mouse intestine. Infection and Immunity. 79: 4218-26. PMID 21825069 DOI: 10.1128/Iai.05395-11  0.387
2010 Huynh TN, Noriega CE, Stewart V. Conserved mechanism for sensor phosphatase control of two-component signaling revealed in the nitrate sensor NarX. Proceedings of the National Academy of Sciences of the United States of America. 107: 21140-5. PMID 21078995 DOI: 10.1073/Pnas.1013081107  0.415
2010 Lin AV, Stewart V. Functional roles for the GerE-family carboxyl-terminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12. Microbiology (Reading, England). 156: 2933-43. PMID 20634237 DOI: 10.1099/Mic.0.040469-0  0.44
2010 Noriega CE, Lin HY, Chen LL, Williams SB, Stewart V. Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12. Molecular Microbiology. 75: 394-412. PMID 19968795 DOI: 10.1111/J.1365-2958.2009.06987.X  0.62
2010 Stewart V, Chen LL. The S helix mediates signal transmission as a HAMP domain coiled-coil extension in the NarX nitrate sensor from Escherichia coli K-12. Journal of Bacteriology. 192: 734-45. PMID 19966007 DOI: 10.1128/Jb.00172-09  0.397
2009 Brody MS, Stewart V, Price CW. Bypass suppression analysis maps the signalling pathway within a multidomain protein: the RsbP energy stress phosphatase 2C from Bacillus subtilis. Molecular Microbiology. 72: 1221-34. PMID 19432806 DOI: 10.1111/J.1365-2958.2009.06722.X  0.359
2009 Pope SD, Chen LL, Stewart V. Purine utilization by Klebsiella oxytoca M5al: genes for ring-oxidizing and -opening enzymes. Journal of Bacteriology. 191: 1006-17. PMID 19060149 DOI: 10.1128/Jb.01281-08  0.349
2009 Stewart V, Bledsoe PJ, Chen LL, Cai A. Catabolite repression control of napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Journal of Bacteriology. 191: 996-1005. PMID 19060147 DOI: 10.1128/Jb.00873-08  0.44
2008 Stewart V. The Ribosome: a Metabolite-Responsive Transcription Regulator Journal of Bacteriology. 190: 4787-4790. PMID 18487319 DOI: 10.1128/Jb.00604-08  0.405
2008 Noriega CE, Schmidt R, Gray MJ, Chen LL, Stewart V. Autophosphorylation and dephosphorylation by soluble forms of the nitrate-responsive sensors NarX and NarQ from Escherichia coli K-12. Journal of Bacteriology. 190: 3869-76. PMID 18375557 DOI: 10.1128/Jb.00092-08  0.455
2008 Nozawa-Inoue M, Jien M, Hamilton NS, Stewart V, Scow KM, Hristova KR. Quantitative detection of perchlorate-reducing bacteria by real-time PCR targeting the perchlorate reductase gene. Applied and Environmental Microbiology. 74: 1941-4. PMID 18245250 DOI: 10.1128/Aem.01658-07  0.32
2008 Stewart V, Bledsoe PJ. Substitutions at Auxiliary Operator O3 Enhance Repression by Nitrate-Responsive Regulator NarL at Synthetic lac Control Regions in Escherichia coli K-12 Journal of Bacteriology. 190: 428-433. PMID 17965164 DOI: 10.1128/Jb.01431-07  0.344
2007 Lin HY, Bledsoe PJ, Stewart V. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen- responsive regulator Fnr in Escherichia coli K-12. Journal of Bacteriology. 189: 7539-48. PMID 17720788 DOI: 10.1128/Jb.00953-07  0.644
2007 Cruz-García C, Murray AE, Klappenbach JA, Stewart V, Tiedje JM. Respiratory nitrate ammonification by Shewanella oneidensis MR-1. Journal of Bacteriology. 189: 656-62. PMID 17098906 DOI: 10.1128/Jb.01194-06  0.359
2006 Guilhabert MR, Stewart VJ, Kirkpatrick BC. Characterization of putative rolling-circle plasmids from the Gram-negative bacterium Xylella fastidiosa and their use as shuttle vectors. Plasmid. 55: 70-80. PMID 16140377 DOI: 10.1016/J.Plasmid.2005.06.004  0.333
2005 Stewart V, Bledsoe PJ. Fnr-, NarP- and NarL-Dependent Regulation of Transcription Initiation from the Haemophilus influenzae Rd napF (Periplasmic Nitrate Reductase) Promoter in Escherichia coli K-12 Journal of Bacteriology. 187: 6928-6935. PMID 16199562 DOI: 10.1128/Jb.187.20.6928-6935.2005  0.483
2005 Goh EB, Bledsoe PJ, Chen LL, Gyaneshwar P, Stewart V, Igo MM. Hierarchical control of anaerobic gene expression in Escherichia coli K-12: the nitrate-responsive NarX-NarL regulatory system represses synthesis of the fumarate-responsive DcuS-DcuR regulatory system. Journal of Bacteriology. 187: 4890-9. PMID 15995204 DOI: 10.1128/Jb.187.14.4890-4899.2005  0.505
2004 Punginelli C, Ize B, Stanley NR, Stewart V, Sawers G, Berks BC, Palmer T. mRNA secondary structure modulates translation of Tat-dependent formate dehydrogenase N. Journal of Bacteriology. 186: 6311-5. PMID 15342602 DOI: 10.1128/Jb.186.18.6311-6315.2004  0.426
2003 Stewart V, Chen LL, Wu HC. Response to culture aeration mediated by the nitrate and nitrite sensor NarQ of Escherichia coli K-12. Molecular Microbiology. 50: 1391-9. PMID 14622424 DOI: 10.1046/J.1365-2958.2003.03776.X  0.502
2003 Stewart V, Bledsoe PJ, Williams SB. Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Journal of Bacteriology. 185: 5862-70. PMID 13129959 DOI: 10.1128/Jb.185.19.5862-5870.2003  0.487
2003 Soupene E, van Heeswijk WC, Plumbridge J, Stewart V, Bertenthal D, Lee H, Prasad G, Paliy O, Charernnoppakul P, Kustu S. Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression. Journal of Bacteriology. 185: 5611-26. PMID 12949114 DOI: 10.1128/Jb.185.18.5611-5626.2003  0.39
2003 Appleman JA, Chen LL, Stewart V. Probing conservation of HAMP linker structure and signal transduction mechanism through analysis of hybrid sensor kinases. Journal of Bacteriology. 185: 4872-82. PMID 12897007 DOI: 10.1128/Jb.185.16.4872-4882.2003  0.363
2003 Stewart V, Bledsoe PJ. Synthetic lac Operator Substitutions for Studying the Nitrate- and Nitrite-Responsive NarX-NarL and NarQ-NarP Two-Component Regulatory Systems of Escherichia coli K-12 Journal of Bacteriology. 185: 2104-2111. PMID 12644479 DOI: 10.1128/Jb.185.7.2104-2111.2003  0.492
2003 Appleman JA, Stewart V. Mutational Analysis of a Conserved Signal-Transducing Element: the HAMP Linker of the Escherichia coli Nitrate Sensor NarX Journal of Bacteriology. 185: 89-97. PMID 12486044 DOI: 10.1128/Jb.185.1.89-97.2003  0.436
2002 Stanley NR, Sargent F, Buchanan G, Shi J, Stewart V, Palmer T, Berks BC. Behaviour of topological marker proteins targeted to the Tat protein transport pathway. Molecular Microbiology. 43: 1005-21. PMID 11929547 DOI: 10.1046/J.1365-2958.2002.02797.X  0.379
2002 Stewart V, Lu Y, Darwin AJ. Periplasmic nitrate reductase (NapABC enzyme) supports anaerobic respiration by Escherichia coli K-12. Journal of Bacteriology. 184: 1314-23. PMID 11844760 DOI: 10.1128/Jb.184.5.1314-1323.2002  0.408
1999 Yan D, Cho HS, Hastings CA, Igo MM, Lee SY, Pelton JG, Stewart V, Wemmer DE, Kustu S. Beryllofluoride mimics phosphorylation of NtrC and other bacterial response regulators. Proceedings of the National Academy of Sciences of the United States of America. 96: 14789-94. PMID 10611291 DOI: 10.1073/Pnas.96.26.14789  0.452
1999 Wu SQ, Chai W, Lin JT, Stewart V. General Nitrogen Regulation of Nitrate Assimilation Regulatory Gene nasR Expression in Klebsiella oxytoca M5al Journal of Bacteriology. 181: 7274-7284. PMID 10572131 DOI: 10.1128/Jb.181.23.7274-7284.1999  0.492
1999 Williams SB, Stewart V. Functional similarities among two-component sensors and methyl-accepting chemotaxis proteins suggest a role for linker region amphipathic helices in transmembrane signal transduction. Molecular Microbiology. 33: 1093-102. PMID 10510225 DOI: 10.1046/J.1365-2958.1999.01562.X  0.415
1999 Chai W, Stewart V. RNA sequence requirements for NasR-mediated, nitrate-responsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader Journal of Molecular Biology. 292: 203-216. PMID 10493869 DOI: 10.1006/Jmbi.1999.3084  0.345
1998 Chai W, Stewart V. NasR, a novel RNA-binding protein, mediates nitrate-responsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader in vitro Journal of Molecular Biology. 283: 339-351. PMID 9769209 DOI: 10.1006/Jmbi.1998.2105  0.473
1998 Darwin AJ, Ziegelhoffer EC, Kiley PJ, Stewart V. Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro Journal of Bacteriology. 180: 4192-4198. PMID 9696769 DOI: 10.1128/Jb.180.16.4192-4198.1998  0.516
1998 Wu Q, Stewart V. NasFED Proteins Mediate Assimilatory Nitrate and Nitrite Transport in Klebsiella oxytoca(pneumoniae) M5al Journal of Bacteriology. 180: 1311-1322. PMID 9495773 DOI: 10.1128/Jb.180.5.1311-1322.1998  0.476
1998 Lin JT, Stewart V. Nitrate assimilation by bacteria Advances in Microbial Physiology. 39: 1-30. PMID 9328645 DOI: 10.1016/S0065-2911(08)60014-4  0.423
1997 Williams SB, Stewart V. Discrimination between structurally related ligands nitrate and nitrite controls autokinase activity of the NarX transmembrane signal transducer of Escherichia coli K-12. Molecular Microbiology. 26: 911-25. PMID 9426129 DOI: 10.1046/J.1365-2958.1997.6262002.X  0.517
1997 Darwin AJ, Tyson KL, Busby SJW, Stewart V. Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement Molecular Microbiology. 25: 583-595. PMID 9302020 DOI: 10.1046/J.1365-2958.1997.4971855.X  0.418
1997 Williams SB, Stewart V. Nitrate- and nitrite-sensing protein NarX of Escherichia coli K-12: mutational analysis of the amino-terminal tail and first transmembrane segment. Journal of Bacteriology. 179: 721-9. PMID 9006026 DOI: 10.1128/Jb.179.3.721-729.1997  0.535
1997 Darwin AJ, Li J, Stewart V. Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12. Molecular Microbiology. 20: 621-32. PMID 8736541 DOI: 10.1046/J.1365-2958.1996.5491074.X  0.464
1996 Lin JT, Stewart V. Nitrate and nitrite-mediated transcription antitermination control of nasF (Nitrate assimilation) operon expression in Klebsiella pneumoniae M5al Journal of Molecular Biology. 256: 423-435. PMID 8604128 DOI: 10.1006/Jmbi.1996.0098  0.513
1995 Darwin AJ, Stewart V. Nitrate and nitrite regulation of the Fnr-dependent aeg-46.5 promoter of Escherichia coli K-12 is mediated by competition between homologous response regulators (NarL and NarP) for a common DNA-binding site. Journal of Molecular Biology. 251: 15-29. PMID 7643383 DOI: 10.1006/Jmbi.1995.0412  0.515
1995 Darwin AJ, Stewart V. Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: regulation of the regulators. Journal of Bacteriology. 177: 3865-9. PMID 7601854 DOI: 10.1128/Jb.177.13.3865-3869.1995  0.461
1994 Lin JT, Goldman BS, Stewart V. The nasFEDCBA operon for nitrate and nitrite assimilation in Klebsiella pneumoniae M5al. Journal of Bacteriology. 176: 2551-2559. PMID 8169203 DOI: 10.1128/Jb.176.9.2551-2559.1994  0.455
1994 Goldman BS, Lin JT, Stewart V. Identification and structure of the nasR gene encoding a nitrate- and nitrite-responsive positive regulator of nasFEDCBA (nitrate assimilation) operon expression in Klebsiella pneumoniae M5al. Journal of Bacteriology. 176: 5077-5085. PMID 8051020 DOI: 10.1128/Jb.176.16.5077-5085.1994  0.495
1994 Stewart V. Regulation of nitrate and nitrite reductase synthesis in enterobacteria. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 66: 37-45. PMID 7747939 DOI: 10.1007/Bf00871631  0.459
1993 Rabin RS, Stewart V. Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12. Journal of Bacteriology. 175: 3259-3268. PMID 8501030 DOI: 10.1128/Jb.175.11.3259-3268.1993  0.526
1993 Lin JT, Goldman BS, Stewart V. Structures of genes nasA and nasB, encoding assimilatory nitrate and nitrite reductases in Klebsiella pneumoniae M5al. Journal of Bacteriology. 175: 2370-2378. PMID 8468296 DOI: 10.1128/Jb.175.8.2370-2378.1993  0.473
1993 Vander Horn PB, Backstrom AD, Stewart V, Begley TP. Structural genes for thiamine biosynthetic enzymes (thiCEFGH) in Escherichia coli K-12. Journal of Bacteriology. 175: 982-92. PMID 8432721 DOI: 10.1128/Jb.175.4.982-992.1993  0.399
1993 Stewart V. Nitrate regulation of anaerobic respiratory gene expression in Escherichia coli Molecular Microbiology. 9: 425-434. PMID 8412692 DOI: 10.1111/J.1365-2958.1993.Tb01704.X  0.522
1992 Li J, Stewart V. Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12. Journal of Bacteriology. 174: 4935-4942. PMID 1629153 DOI: 10.1128/Jb.174.15.4935-4942.1992  0.452
1992 Collins LA, Egan SM, Stewart V. Mutational analysis reveals functional similarity between NARX, a nitrate sensor in Escherichia coli K-12, and the methyl-accepting chemotaxis proteins. Journal of Bacteriology. 174: 3667-75. PMID 1592821 DOI: 10.1128/Jb.174.11.3667-3675.1992  0.504
1992 Rabin RS, Collins LA, Stewart V. In vivo requirement of integration host factor for nar (nitrate reductase) operon expression in Escherichia coli K-12. Proceedings of the National Academy of Sciences of the United States of America. 89: 8701-5. PMID 1528882 DOI: 10.1073/Pnas.89.18.8701  0.494
1992 Rabin RS, Stewart V. Either of two functionally redundant sensor proteins, NarX and NarQ, is sufficient for nitrate regulation in Escherichia coli K-12. Proceedings of the National Academy of Sciences of the United States of America. 89: 8419-8423. PMID 1528845 DOI: 10.1073/Pnas.89.18.8419  0.552
1992 Shanmugam KT, Stewart V, Gunsalus RP, Boxer DH, Cole JA, Chippaux M, DeMoss JA, Giordano G, Lin EC, Rajagopalan KV. Proposed nomenclature for the genes involved in molybdenum metabolism in Escherichia coli and Salmonella typhimurium. Molecular Microbiology. 6: 3452-4. PMID 1484496 DOI: 10.1111/J.1365-2958.1992.Tb02215.X  0.348
1991 Egan SM, Stewart V. Mutational analysis of nitrate regulatory gene narL in Escherichia coli K-12 Journal of Bacteriology. 173: 4424-4432. PMID 2066339 DOI: 10.1128/Jb.173.14.4424-4432.1991  0.494
1991 Stewart V, Lin JT, Berg BL. Genetic evidence that genes fdhD and fdhE do not control synthesis of formate dehydrogenase-N in Escherichia coli K-12. Journal of Bacteriology. 173: 4417-4423. PMID 1648557 DOI: 10.1128/Jb.173.14.4417-4423.1991  0.437
1990 Stewart V, Cali BM. Genetic evidence that NarL function is not required for nitrate regulation of nitrate assimilation in Klebsiella pneumoniae M5al. Journal of Bacteriology. 172: 4482-4488. PMID 2198261 DOI: 10.1128/Jb.172.8.4482-4488.1990  0.507
1990 Egan SM, Stewart V. Nitrate regulation of anaerobic respiratory gene expression in narX deletion mutants of Escherichia coli K-12 Journal of Bacteriology. 172: 5020-5029. PMID 2144276 DOI: 10.1128/Jb.172.9.5020-5029.1990  0.497
1989 Stewart V, Parales J, Merkel SM. Structure of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12. Journal of Bacteriology. 171: 2229-34. PMID 2649492 DOI: 10.1128/Jb.171.4.2229-2234.1989  0.463
1989 Cali BM, Micca JL, Stewart V. Genetic regulation of nitrate assimilation in Klebsiella pneumoniae M5al. Journal of Bacteriology. 171: 2666-2672. PMID 2540153 DOI: 10.1128/Jb.171.5.2666-2672.1989  0.37
1988 Stewart V, Berg BL. Influence of nar (nitrate reductase) genes on nitrate inhibition of formate-hydrogen lyase and fumarate reductase gene expression in Escherichia coli K-12. Journal of Bacteriology. 170: 4437-4444. PMID 3049531 DOI: 10.1128/Jb.170.10.4437-4444.1988  0.411
1988 Stewart V, Parales J. Identification and expression of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12. Journal of Bacteriology. 170: 1589-1597. PMID 2832370 DOI: 10.1128/Jb.170.4.1589-1597.1988  0.466
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