Yukiko Yamashita, Ph.D - Publications

Affiliations: 
2007-2020 University of Michigan, Ann Arbor, Ann Arbor, MI 
 2020- Biology Whitehead Institute (MIT), HHMI 
Area:
asymmetric stem cell division, satellite DNA
Website:
https://biology.mit.edu/profile/yukiko-yamashita/

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nelson JO, Kumon T, Yamashita YM. rDNA magnification is a unique feature of germline stem cells. Proceedings of the National Academy of Sciences of the United States of America. 120: e2314440120. PMID 37967216 DOI: 10.1073/pnas.2314440120  0.749
2023 Venkei ZG, Gainetdinov I, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, ... Yamashita YM, et al. A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila. Nature Cell Biology. PMID 37723298 DOI: 10.1038/s41556-023-01227-4  0.782
2023 Yamashita YM. Asymmetric Stem Cell Division and Germline Immortality. Annual Review of Genetics. PMID 37552892 DOI: 10.1146/annurev-genet-022123-040039  0.319
2023 Nelson JO, Slicko A, Yamashita YM. The retrotransposon R2 maintains ribosomal DNA repeats. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221613120. PMID 37252996 DOI: 10.1073/pnas.2221613120  0.642
2023 Fingerhut JM, Yamashita YM. Analysis of Gene Expression Patterns and RNA Localization by Fluorescence in Situ Hybridization in Whole Mount Drosophila Testes. Methods in Molecular Biology (Clifton, N.J.). 2666: 15-28. PMID 37166654 DOI: 10.1007/978-1-0716-3191-1_2  0.77
2023 Park JI, Bell GW, Yamashita YM. Derepression of Y-linked multicopy protamine-like genes interferes with sperm nuclear compaction in . Proceedings of the National Academy of Sciences of the United States of America. 120: e2220576120. PMID 37036962 DOI: 10.1073/pnas.2220576120  0.357
2023 Diegmiller R, Imran Alsous J, Li D, Yamashita YM, Shvartsman SY. Fusome topology and inheritance during insect gametogenesis. Plos Computational Biology. 19: e1010875. PMID 36821548 DOI: 10.1371/journal.pcbi.1010875  0.778
2023 Raz AA, Vida GS, Stern SR, Mahadevaraju S, Fingerhut JM, Viveiros JM, Pal S, Grey JR, Grace MR, Berry CW, Li H, Janssens J, Saelens W, Shao Z, Hu C, ... Yamashita YM, et al. Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of testes. Elife. 12. PMID 36795469 DOI: 10.7554/eLife.82201  0.801
2022 Li D, Gandhi D, Kumon T, Yamashita YM. ribosomal DNA instability as a potential cause of karyotype evolution. Molecular Biology and Evolution. PMID 36223491 DOI: 10.1093/molbev/msac221  0.783
2022 Watase GJ, Nelson JO, Yamashita YM. Nonrandom sister chromatid segregation mediates rDNA copy number maintenance in . Science Advances. 8: eabo4443. PMID 35895823 DOI: 10.1126/sciadv.abo4443  0.812
2022 Fingerhut JM, Yamashita YM. The regulation and potential functions of intronic satellite DNA. Seminars in Cell & Developmental Biology. PMID 35469677 DOI: 10.1016/j.semcdb.2022.04.010  0.793
2021 Raz AA, Yamashita YM. Stem cell niche signaling goes both ways. Developmental Cell. 56: 2267-2268. PMID 34428394 DOI: 10.1016/j.devcel.2021.08.003  0.35
2021 Jagannathan M, Yamashita YM. Defective satellite DNA clustering into chromocenters underlies hybrid incompatibility in Drosophila. Molecular Biology and Evolution. PMID 34302471 DOI: 10.1093/molbev/msab221  0.655
2021 Jensen L, Venkei ZG, Watase GJ, Bisai B, Pletcher S, Lee CY, Yamashita YM. me31B regulates stem cell homeostasis by preventing excess dedifferentiation in the Drosophila male germline. Journal of Cell Science. PMID 34164657 DOI: 10.1242/jcs.258757  0.796
2021 Chen C, Yamashita YM. Centrosome-centric view of asymmetric stem cell division. Open Biology. 11: 200314. PMID 33435817 DOI: 10.1098/rsob.200314  0.392
2020 Chen C, Yamashita YM. Alstrom syndrome gene is a stem cell-specific regulator of centriole duplication in the testis. Elife. 9. PMID 32965218 DOI: 10.7554/eLife.59368  0.394
2020 Fingerhut JM, Yamashita YM. mRNA localization mediates maturation of cytoplasmic cilia in Drosophila spermatogenesis. The Journal of Cell Biology. 219. PMID 32706373 DOI: 10.1083/Jcb.202003084  0.769
2020 Warsinger-Pepe N, Li D, Yamashita YM. Regulation of Nucleolar Dominance in . Genetics. PMID 32122935 DOI: 10.1534/Genetics.119.302471  0.762
2019 Nelson JO, Watase GJ, Warsinger-Pepe N, Yamashita YM. Mechanisms of rDNA Copy Number Maintenance. Trends in Genetics : Tig. PMID 31395390 DOI: 10.1016/J.Tig.2019.07.006  0.769
2019 Nelson JO, Chen C, Yamashita YM. Germline stem cell homeostasis. Current Topics in Developmental Biology. 135: 203-244. PMID 31155359 DOI: 10.1016/Bs.Ctdb.2019.04.006  0.702
2019 Fingerhut JM, Moran JV, Yamashita YM. Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis. Plos Genetics. 15: e1008028. PMID 31071079 DOI: 10.1371/Journal.Pgen.1008028  0.78
2019 Jagannathan M, Cummings R, Yamashita YM. The modular mechanism of chromocenter formation in . Elife. 8. PMID 30741633 DOI: 10.7554/Elife.43938  0.787
2018 Jagannathan M, Yamashita Y. Evolution Repeats Itself in Building a Species Barrier. Developmental Cell. 47: 527-528. PMID 30513292 DOI: 10.1016/J.Devcel.2018.11.025  0.656
2018 Yamashita YM. Cell biology of stem cells: studying stem cells at the level of cell biology and studying cell biology using stem cells. Molecular Biology of the Cell. 29: 2912. PMID 30475100 DOI: 10.1091/mbc.E18-09-0596  0.362
2018 Venkei ZG, Yamashita YM. Emerging mechanisms of asymmetric stem cell division. The Journal of Cell Biology. PMID 30232100 DOI: 10.1083/jcb.201807037  0.389
2018 Yamashita YM, Inaba M, Buszczak M. Specialized Intercellular Communications via Cytonemes and Nanotubes. Annual Review of Cell and Developmental Biology. PMID 30074816 DOI: 10.1146/Annurev-Cellbio-100617-062932  0.708
2018 Jagannathan M, Yamashita YM. Function of Junk: Pericentromeric Satellite DNA in Chromosome Maintenance. Cold Spring Harbor Symposia On Quantitative Biology. PMID 29610245 DOI: 10.1101/Sqb.2017.82.034504  0.651
2018 Chen C, Cummings R, Mordovanakis A, Hunt AJ, Mayer M, Sept D, Yamashita YM. Cytokine receptor-Eb1 interaction couples cell polarity and fate during asymmetric cell division. Elife. 7. PMID 29578412 DOI: 10.7554/Elife.33685  0.816
2018 Jagannathan M, Cummings R, Yamashita YM. A conserved function for pericentromeric satellite DNA. Elife. 7. PMID 29578410 DOI: 10.7554/Elife.34122  0.802
2018 Lu KL, Nelson JO, Watase GJ, Warsinger-Pepe N, Yamashita YM. Transgenerational dynamics of rDNA copy number inmale germline stem cells. Elife. 7. PMID 29436367 DOI: 10.7554/Elife.32421  0.772
2017 Lu K, Jensen L, Lei L, Yamashita YM. Stay Connected: A Germ Cell Strategy. Trends in Genetics : Tig. PMID 28947158 DOI: 10.1016/J.Tig.2017.09.001  0.787
2017 Inaba M, Sorenson DR, Kortus M, Salzmann V, Yamashita YM. Merlin is required for coordinating proliferation of two stem cell lineages in the Drosophila testis. Scientific Reports. 7: 2502. PMID 28566755 DOI: 10.1038/S41598-017-02768-Z  0.664
2017 Chiang AC, Yang H, Yamashita YM. spict, a cyst cell-specific gene, regulates starvation-induced spermatogonial cell death in the Drosophila testis. Scientific Reports. 7: 40245. PMID 28071722 DOI: 10.1038/srep40245  0.814
2017 Inaba M, Yamashita YM. Evaluation of the Asymmetric Division of Drosophila Male Germline Stem Cells. Methods in Molecular Biology (Clifton, N.J.). 1463: 49-62. PMID 27734346 DOI: 10.1007/978-1-4939-4017-2_3  0.663
2016 Jagannathan M, Warsinger-Pepe N, Watase GJ, Yamashita YM. Comparative Analysis of Satellite DNA in the Drosophila melanogaster Species Complex. G3 (Bethesda, Md.). PMID 28007840 DOI: 10.1534/G3.116.035352  0.742
2016 Chen C, Inaba M, Venkei ZG, Yamashita YM. Klp10A, a stem cell centrosome-enriched kinesin, balances asymmetries in Drosophila male germline stem cell division. Elife. 5. PMID 27885983 DOI: 10.7554/Elife.20977  0.67
2016 Inaba M, Yamashita YM, Buszczak M. Keeping stem cells under control: New insights into the mechanisms that limit niche-stem cell signaling within the reproductive system. Molecular Reproduction and Development. PMID 27434704 DOI: 10.1002/Mrd.22682  0.78
2016 Chen C, Fingerhut JM, Yamashita YM. The ins(ide) and outs(ide) of asymmetric stem cell division. Current Opinion in Cell Biology. 43: 1-6. PMID 27318429 DOI: 10.1016/J.Ceb.2016.06.001  0.818
2016 Buszczak M, Inaba M, Yamashita YM. Signaling by Cellular Protrusions: Keeping the Conversation Private. Trends in Cell Biology. PMID 27032616 DOI: 10.1016/J.Tcb.2016.03.003  0.76
2015 Artandi SE, Blau HM, de Haan G, Geiger H, Goodell MA, Jones L, Levine RL, Muñoz-Cánoves P, Rodewald HR, Wagers A, Wang ZQ, Yamashita Y. Stem Cells and Aging: What's Next? Cell Stem Cell. 16: 578-81. PMID 26247067 DOI: 10.1016/J.Stem.2015.05.005  0.592
2015 Inaba M, Buszczak M, Yamashita YM. Nanotubes mediate niche-stem-cell signalling in the Drosophila testis. Nature. 523: 329-32. PMID 26131929 DOI: 10.1038/Nature14602  0.777
2015 Inaba M, Venkei ZG, Yamashita YM. The polarity protein Baz forms a platform for the centrosome orientation during asymmetric stem cell division in the Drosophila male germline. Elife. 4. PMID 25793442 DOI: 10.7554/Elife.04960  0.616
2015 Venkei ZG, Yamashita YM. The centrosome orientation checkpoint is germline stem cell specific and operates prior to the spindle assembly checkpoint in Drosophila testis. Development (Cambridge, England). 142: 62-9. PMID 25480919 DOI: 10.1242/dev.117044  0.4
2014 Ma X, Wang S, Do T, Song X, Inaba M, Nishimoto Y, Liu LP, Gao Y, Mao Y, Li H, McDowell W, Park J, Malanowski K, Peak A, Perera A, ... ... Yamashita Y, et al. Piwi is required in multiple cell types to control germline stem cell lineage development in the Drosophila ovary. Plos One. 9: e90267. PMID 24658126 DOI: 10.1371/Journal.Pone.0090267  0.701
2014 Yamashita YM, Tumbar T. Stem cells and their niche in homeostasis/regeneration and disease. Molecular Biology of the Cell. 25: 736. PMID 24626849 DOI: 10.1091/Mbc.E13-11-0674  0.389
2014 Shields AR, Spence AC, Yamashita YM, Davies EL, Fuller MT. The actin-binding protein profilin is required for germline stem cell maintenance and germ cell enclosure by somatic cyst cells. Development (Cambridge, England). 141: 73-82. PMID 24346697 DOI: 10.1242/dev.101931  0.64
2014 Salzmann V, Chen C, Chiang CY, Tiyaboonchai A, Mayer M, Yamashita YM. Centrosome-dependent asymmetric inheritance of the midbody ring in Drosophila germline stem cell division. Molecular Biology of the Cell. 25: 267-75. PMID 24227883 DOI: 10.1091/Mbc.E13-09-0541  0.375
2013 Salzmann V, Inaba M, Cheng J, Yamashita YM. Lineage tracing quantification reveals symmetric stem cell division in Drosophila male germline stem cells. Cellular and Molecular Bioengineering. 6: 441-448. PMID 24465278 DOI: 10.1007/S12195-013-0295-6  0.666
2013 Yamashita YM. Nonrandom template segregation: a way to break the symmetry of stem cells. The Journal of Cell Biology. 203: 7-9. PMID 24127212 DOI: 10.1083/jcb.201308110  0.334
2013 Yadlapalli S, Yamashita YM. DNA asymmetry in stem cells - immortal or mortal? Journal of Cell Science. 126: 4069-76. PMID 23970416 DOI: 10.1242/Jcs.096024  0.778
2013 Yamashita YM. Biased DNA segregation in Drosophila male germline stem cells. Seminars in Cell & Developmental Biology. 24: 618-26. PMID 23707893 DOI: 10.1016/j.semcdb.2013.05.002  0.441
2013 Yamashita YM. Nonrandom sister chromatid segregation of sex chromosomes in Drosophila male germline stem cells. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 243-54. PMID 23681657 DOI: 10.1007/s10577-013-9353-0  0.445
2013 Yadlapalli S, Yamashita YM. Chromosome-specific nonrandom sister chromatid segregation during stem-cell division. Nature. 498: 251-4. PMID 23644460 DOI: 10.1038/Nature12106  0.779
2012 Yadlapalli S, Yamashita YM. Spindle positioning in the stem cell niche. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 215-30. PMID 23801437 DOI: 10.1002/Wdev.16  0.759
2012 Inaba M, Yamashita YM. Asymmetric stem cell division: precision for robustness. Cell Stem Cell. 11: 461-9. PMID 23040475 DOI: 10.1016/J.Stem.2012.09.003  0.658
2012 Roth TM, Chiang CY, Inaba M, Yuan H, Salzmann V, Roth CE, Yamashita YM. Centrosome misorientation mediates slowing of the cell cycle under limited nutrient conditions in Drosophila male germline stem cells. Molecular Biology of the Cell. 23: 1524-32. PMID 22357619 DOI: 10.1091/Mbc.E11-12-0999  0.667
2012 Yagi T, Ishikawa J, Aono N, Yamashita Y, Kusakabe S, Yoshinami T, Akazawa Y, Sakai D, Yamamoto S, Hamanaka Y, Masaie H, Sugimoto N, Yoshida H, Tomita Y, Imamura F. Epstein-Barr virus-associated post-transplant lymphoproliferative disorders after allogeneic peripheral blood stem cell transplantation for Hodgkin-like adult T-cell leukemia/lymphoma. International Journal of Hematology. 95: 214-6. PMID 22170229 DOI: 10.1007/S12185-011-0979-4  0.304
2011 Inaba M, Yuan H, Yamashita YM. String (Cdc25) regulates stem cell maintenance, proliferation and aging in Drosophila testis. Development (Cambridge, England). 138: 5079-86. PMID 22031544 DOI: 10.1242/Dev.072579  0.652
2011 Pereira G, Yamashita YM. Fly meets yeast: checking the correct orientation of cell division. Trends in Cell Biology. 21: 526-33. PMID 21705221 DOI: 10.1016/j.tcb.2011.05.004  0.413
2011 Yadlapalli S, Cheng J, Yamashita YM. Drosophila male germline stem cells do not asymmetrically segregate chromosome strands. Journal of Cell Science. 124: 933-9. PMID 21325028 DOI: 10.1242/Dev.066407  0.782
2011 Cheng J, Tiyaboonchai A, Yamashita YM, Hunt AJ. Asymmetric division of cyst stem cells in Drosophila testis is ensured by anaphase spindle repositioning. Development (Cambridge, England). 138: 831-7. PMID 21303845 DOI: 10.1242/Dev.057901  0.38
2011 Yadlapalli S, Cheng J, Yamashita YM. Reply to: Overlooked areas need attention for sound evaluation of DNA strand inheritance patterns in Drosophila male germline stem cells Journal of Cell Science. 124: 4138-4139. DOI: 10.1242/Jcs.097949  0.742
2010 Inaba M, Yuan H, Salzmann V, Fuller MT, Yamashita YM. E-cadherin is required for centrosome and spindle orientation in Drosophila male germline stem cells. Plos One. 5: e12473. PMID 20824213 DOI: 10.1371/Journal.Pone.0012473  0.731
2010 Yuan H, Yamashita YM. Germline stem cells: stems of the next generation. Current Opinion in Cell Biology. 22: 730-6. PMID 20817500 DOI: 10.1016/j.ceb.2010.08.013  0.375
2010 Yamashita YM. Cell adhesion in regulation of asymmetric stem cell division. Current Opinion in Cell Biology. 22: 605-10. PMID 20724132 DOI: 10.1016/j.ceb.2010.07.009  0.363
2010 Yamashita YM, Yuan H, Cheng J, Hunt AJ. Polarity in stem cell division: asymmetric stem cell division in tissue homeostasis. Cold Spring Harbor Perspectives in Biology. 2: a001313. PMID 20182603 DOI: 10.1101/Cshperspect.A001313  0.368
2010 Yamashita YM. A new member of the spindle orientation club: mammalian intestinal stem cells. Cell Stem Cell. 6: 91-2. PMID 20144779 DOI: 10.1016/j.stem.2010.01.009  0.348
2010 Yamashita YM, Yuan H, Yadlapalli S. Regulation of centrosome orientation in asymmetric division of the Drosophila male germ line stem cells Developmental Biology. 344: 416. DOI: 10.1016/J.Ydbio.2010.05.036  0.689
2009 Yamashita YM. The centrosome and asymmetric cell division. Prion. 3: 84-8. PMID 19458491  0.374
2009 Yamashita YM. Regulation of asymmetric stem cell division: spindle orientation and the centrosome. Frontiers in Bioscience (Landmark Edition). 14: 3003-11. PMID 19273252 DOI: 10.2735/3430  0.381
2009 Yamashita Y. Asymmetric stem cell division and pathology: Insights from drosophila stem cell systems Journal of Pathology. 217: 181-185. PMID 19040208 DOI: 10.1002/Path.2470  0.471
2009 Yamashita YM, Yuan H, Cheng J, Hunt AJ. Asymmetric stem cell division ensured by anaphase spindle repositioning Developmental Biology. 331: 385. DOI: 10.1016/J.Ydbio.2009.05.008  0.339
2008 Cheng J, Türkel N, Hemati N, Fuller MT, Hunt AJ, Yamashita YM. Centrosome misorientation reduces stem cell division during ageing. Nature. 456: 599-604. PMID 18923395 DOI: 10.1038/Nature07386  0.639
2008 Yamashita YM. Selfish stem cells compete with each other. Cell Stem Cell. 2: 3-4. PMID 18371411 DOI: 10.1016/j.stem.2007.12.008  0.347
2008 Yamashita YM, Fuller MT. Asymmetric centrosome behavior and the mechanisms of stem cell division. The Journal of Cell Biology. 180: 261-6. PMID 18209101 DOI: 10.1083/jcb.200707083  0.615
2007 Yamashita Y. [Mechanisms of asymmetric stem cell division in the Drosophila male germ line]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 52: 2130-5. PMID 21089283  0.339
2007 Yamashita YM, Mahowald AP, Perlin JR, Fuller MT. Asymmetric inheritance of mother versus daughter centrosome in stem cell division. Science (New York, N.Y.). 315: 518-21. PMID 17255513 DOI: 10.1126/science.1134910  0.63
2006 Yamashita Y. [Cellular mechanisms of asymmetric stem cell divisions in the stem cell niche]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 51: 2306-11. PMID 17154055  0.362
2006 Kubo N, Onoda N, Ishikawa T, Ogawa Y, Takashima T, Yamashita Y, Tahara H, Inaba M, Hirakawa K. Simultaneous bilateral laparoscopic adrenalectomy for adrenocorticotropic hormone-independent macronodular adrenal hyerplasia: report of a case. Surgery Today. 36: 642-6. PMID 16794802 DOI: 10.1007/s00595-006-3209-6  0.493
2005 Yamashita YM, Fuller MT. Asymmetric stem cell division and function of the niche in the Drosophila male germ line. International Journal of Hematology. 82: 377-80. PMID 16533738 DOI: 10.1532/IJH97.05097  0.636
2005 Yamashita YM, Fuller MT, Jones DL. Signaling in stem cell niches: lessons from the Drosophila germline. Journal of Cell Science. 118: 665-72. PMID 15701923 DOI: 10.1242/jcs.01680  0.63
2004 Schulz C, Kiger AA, Tazuke SI, Yamashita YM, Pantalena-Filho LC, Jones DL, Wood CG, Fuller MT. A misexpression screen reveals effects of bag-of-marbles and TGF beta class signaling on the Drosophila male germ-line stem cell lineage. Genetics. 167: 707-23. PMID 15238523 DOI: 10.1534/genetics.103.023184  0.747
2004 Jones DL, Yamashita YM, Schulz C, Fuller MT. Regulation of Stem Cell Self-renewal Versus Differentiation by a Support Cell Niche: Lessons from the Drosophila Male Germ Line Handbook of Stem Cells. 1: 171-178. DOI: 10.1016/B978-012436643-5/50023-7  0.61
2003 Yamashita YM, Jones DL, Fuller MT. Orientation of asymmetric stem cell division by the APC tumor suppressor and centrosome. Science (New York, N.Y.). 301: 1547-50. PMID 12970569 DOI: 10.1126/science.1087795  0.618
2001 Sonoda E, Takata M, Yamashita YM, Morrison C, Takeda S. Homologous DNA recombination in vertebrate cells Proceedings of the National Academy of Sciences of the United States of America. 98: 8388-8394. PMID 11459980 DOI: 10.1073/pnas.111006398  0.304
2001 Sonoda E, Takata M, Yamashita YM, Takeda S. Homologous DNA recombination is essential for the proliferation of vertebrate cells Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 46: 1046-1054. PMID 11436292  0.301
1999 Yamaguchi-Iwai Y, Sonoda E, Sasaki MS, Morrison C, Haraguchi T, Hiraoka Y, Yamashita YM, Yagi T, Takata M, Price C, Kakazu N, Takeda S. Mre11 is essential for the maintenance of chromosomal DNA in vertebrate cells Embo Journal. 18: 6619-6629. PMID 10581236 DOI: 10.1093/Emboj/18.23.6619  0.305
1996 Saitoh S, Takahashi K, Nabeshima K, Yamashita Y, Nakaseko Y, Hirata A, Yanagida M. Aberrant mitosis in fission yeast mutants defective in fatty acid synthetase and acetyl CoA carboxylase. The Journal of Cell Biology. 134: 949-61. PMID 8769419 DOI: 10.1083/Jcb.134.4.949  0.3
1994 Saka Y, Sutani T, Yamashita Y, Saitoh S, Takeuchi M, Nakaseko Y, Yanagida M. Fission yeast cut3 and cut14, members of a ubiquitous protein family, are required for chromosome condensation and segregation in mitosis. The Embo Journal. 13: 4938-52. PMID 7957061 DOI: 10.1002/J.1460-2075.1994.Tb06821.X  0.376
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