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Christopher L. Dupont, Ph.D. - Publications

Affiliations: 
2008 Oceanography University of California, San Diego, La Jolla, CA 
Area:
Environmental Sciences, Oceanography Biology, Microbiology Biology
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84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Saito MA, Saunders JK, Chagnon M, Gaylord DA, Shepherd A, Held NA, Dupont C, Symmonds N, York A, Charron M, Kinkade DB. Development of an Ocean Protein Portal for Interactive Discovery and Education. Journal of Proteome Research. PMID 32897077 DOI: 10.1021/Acs.Jproteome.0C00382  0.315
2020 Stuart RK, Pederson ERA, Weyman PD, Weber PK, Rassmussen U, Dupont CL. Bidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism. The Isme Journal. PMID 32814866 DOI: 10.1038/S41396-020-00738-4  0.574
2020 Rathour R, Gupta J, Mishra A, Rajeev AC, Dupont CL, Thakur IS. A comparative metagenomic study reveals microbial diversity and their role in the biogeochemical cycling of Pangong lake. The Science of the Total Environment. 731: 139074. PMID 32417476 DOI: 10.1016/J.Scitotenv.2020.139074  0.381
2020 Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, ... ... Dupont CL, et al. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32251396 DOI: 10.1038/S41592-020-0796-X  0.329
2020 O'Rourke A, Lee MD, Nierman WC, Everroad RC, Dupont CL. Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station. Plos One. 15: e0227152. PMID 32074104 DOI: 10.1371/Journal.Pone.0227152  0.374
2020 Okie JG, Poret-Peterson AT, Lee ZM, Richter A, Alcaraz LD, Eguiarte LE, Siefert JL, Souza V, Dupont CL, Elser JJ. Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment. Elife. 9. PMID 31989922 DOI: 10.7554/Elife.49816  0.396
2020 Saito MA, McIlvin MR, Moran DM, Santoro AE, Dupont CL, Rafter PA, Saunders JK, Kaul D, Lamborg CH, Westley M, Valois F, Waterbury JB. Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean Nature Geoscience. 13: 355-362. DOI: 10.1038/S41561-020-0565-6  0.346
2020 Bowman KL, Collins RE, Agather AM, Lamborg CH, Hammerschmidt CR, Kaul D, Dupont CL, Christensen GA, Elias DA. Distribution of mercury‐cycling genes in the Arctic and equatorial Pacific Oceans and their relationship to mercury speciation Limnology and Oceanography. 65. DOI: 10.1002/Lno.11310  0.327
2019 Hoarfrost A, Nayfach S, Ladau J, Yooseph S, Arnosti C, Dupont CL, Pollard KS. Global ecotypes in the ubiquitous marine clade SAR86. The Isme Journal. PMID 31611653 DOI: 10.1038/S41396-019-0516-7  0.368
2019 Smith SR, Dupont CL, McCarthy JK, Broddrick JT, Oborník M, Horák A, Füssy Z, Cihlář J, Kleessen S, Zheng H, McCrow JP, Hixson KK, Araújo WL, Nunes-Nesi A, Fernie A, et al. Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nature Communications. 10: 4552. PMID 31591397 DOI: 10.1038/S41467-019-12407-Y  0.384
2019 Broddrick JT, Du N, Smith SR, Tsuji Y, Jallet D, Ware MA, Peers G, Matsuda Y, Dupont CL, Mitchell BG, Palsson BO, Allen AE. Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum. The New Phytologist. PMID 30636322 DOI: 10.1111/Nph.15685  0.333
2019 Okie JG, Poret-Peterson AT, Lee ZM, Richter A, Alcaraz LD, Eguiarte LE, Siefert JL, Souza V, Dupont CL, Elser JJ. Author response: Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment Elife. DOI: 10.7554/Elife.49816.Sa2  0.334
2018 Jaffe AL, Castelle CJ, Dupont CL, Banfield JF. Lateral gene transfer shapes the distribution of RuBisCO among Candidate Phyla Radiation bacteria and DPANN archaea. Molecular Biology and Evolution. PMID 30544151 DOI: 10.1093/Molbev/Msy234  0.416
2018 Hogle SL, Dupont CL, Hopkinson BM, King AL, Buck KN, Roe KL, Stuart RK, Allen AE, Mann EL, Johnson ZI, Barbeau KA. Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. Proceedings of the National Academy of Sciences of the United States of America. PMID 30530699 DOI: 10.1073/Pnas.1813192115  0.578
2018 Espinoza JL, Harkins DM, Torralba M, Gomez A, Highlander SK, Jones MB, Leong P, Saffery R, Bockmann M, Kuelbs C, Inman JM, Hughes T, Craig JM, Nelson KE, Dupont CL. Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease. Mbio. 9. PMID 30482830 DOI: 10.1128/Mbio.01631-18  0.38
2018 Santoro AE, Richter RA, Dupont CL. Planktonic Marine Archaea. Annual Review of Marine Science. PMID 30212260 DOI: 10.1146/Annurev-Marine-121916-063141  0.348
2018 Weiss H, Hertzberg VS, Dupont C, Espinoza JL, Levy S, Nelson K, Norris S. The Airplane Cabin Microbiome. Microbial Ecology. PMID 29876609 DOI: 10.1007/S00248-018-1191-3  0.324
2018 Isson TT, Love GD, Dupont CL, Reinhard CT, Zumberge AJ, Asael D, Gueguen B, McCrow J, Gill BC, Owens J, Rainbird RH, Rooney AD, Zhao MY, Stueeken EE, Konhauser KO, et al. Tracking the rise of eukaryotes to ecological dominance with zinc isotopes. Geobiology. 16: 341-352. PMID 29869832 DOI: 10.1111/Gbi.12289  0.356
2018 Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA. Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm. Nature Communications. 9: 2017. PMID 29789621 DOI: 10.1038/S41467-018-04409-Z  0.359
2018 Carini P, Dupont CL, Santoro AE. Patterns of thaumarchaeal gene expression in culture and diverse marine environments. Environmental Microbiology. PMID 29626379 DOI: 10.1111/1462-2920.14107  0.386
2018 Warshan D, Liaimer A, Pederson E, Kim SY, Shapiro N, Woyke T, Altermark B, Pawlowski K, Weyman PD, Dupont CL, Rasmussen U. Genomic changes associated with the evolutionary transitions of Nostoc to a plant symbiont. Molecular Biology and Evolution. PMID 29554291 DOI: 10.1093/Molbev/Msy029  0.371
2018 Berg C, Dupont CL, Asplund-Samuelsson J, Celepli NA, Eiler A, Allen AE, Ekman M, Bergman B, Ininbergs K. Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00055  0.399
2017 Warshan D, Espinoza JL, Stuart RK, Richter RA, Kim SY, Shapiro N, Woyke T, C Kyrpides N, Barry K, Singan V, Lindquist E, Ansong C, Purvine SO, M Brewer H, Weyman PD, ... Dupont CL, et al. Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis. The Isme Journal. PMID 28800136 DOI: 10.1038/Ismej.2017.134  0.621
2017 Fridman S, Flores-Uribe J, Larom S, Alalouf O, Liran O, Yacoby I, Salama F, Bailleul B, Rappaport F, Ziv T, Sharon I, Cornejo-Castillo FM, Philosof A, Dupont CL, Sánchez P, et al. A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells. Nature Microbiology. PMID 28785078 DOI: 10.1038/S41564-017-0002-9  0.353
2017 Matsuda Y, Hopkinson BM, Nakajima K, Dupont CL, Tsuji Y. Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms: a gateway to carbon metabolism. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28717013 DOI: 10.1098/Rstb.2016.0403  0.305
2017 Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD. Diatom centromeres suggest a mechanism for nuclear DNA acquisition. Proceedings of the National Academy of Sciences of the United States of America. PMID 28673987 DOI: 10.1073/Pnas.1700764114  0.334
2017 Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ. Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond. Frontiers in Microbiology. 8: 949. PMID 28611750 DOI: 10.3389/Fmicb.2017.00949  0.363
2017 Shen C, Dupont CL, Hopkinson BM. The diversity of carbon dioxide-concentrating mechanisms in marine diatoms as inferred from their genetic content. Journal of Experimental Botany. PMID 28510761 DOI: 10.1093/Jxb/Erx163  0.431
2017 Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 1-5. PMID 28092920 DOI: 10.1038/Nature20803  0.404
2017 Celepli N, Sundh J, Ekman M, Dupont CL, Yooseph S, Bergman B, Ininbergs K. Meta-omic analyses of Baltic Sea cyanobacteria: diversity, community structure and salt acclimation. Environmental Microbiology. 19: 673-686. PMID 27871145 DOI: 10.1111/1462-2920.13592  0.354
2017 Santoro AE, Saito MA, Goepfert TJ, Lamborg CH, Dupont CL, DiTullio GR. Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation Limnology and Oceanography. 62: 1984-2003. DOI: 10.1002/Lno.10547  0.373
2016 Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. Plos Genetics. 12: e1006490. PMID 27973599 DOI: 10.1371/Journal.Pgen.1006490  0.35
2016 Diner RE, Bielinski VA, Dupont CL, Allen AE, Weyman PD. Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods. Frontiers in Bioengineering and Biotechnology. 4: 65. PMID 27551676 DOI: 10.3389/Fbioe.2016.00065  0.339
2016 Asplund-Samuelsson J, Sundh J, Dupont CL, Allen AE, McCrow JP, Celepli NA, Bergman B, Ininbergs K, Ekman M. Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem. Frontiers in Microbiology. 7: 1043. PMID 27458440 DOI: 10.3389/Fmicb.2016.01043  0.423
2016 Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO. Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly. The Isme Journal. PMID 27392085 DOI: 10.1038/Ismej.2016.93  0.41
2016 Brindefalk B, Ekman M, Ininbergs K, Dupont CL, Yooseph S, Pinhassi J, Bergman B. Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters. Environmental Microbiology. PMID 27306515 DOI: 10.1111/1462-2920.13407  0.388
2016 Díez B, Nylander JA, Ininbergs K, Dupont CL, Allen AE, Yooseph S, Rusch DB, Bergman B. Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution. Plos One. 11: e0155757. PMID 27196065 DOI: 10.1371/Journal.Pone.0155757  0.416
2016 Levering J, Broddrick J, Dupont CL, Peers G, Beeri K, Mayers J, Gallina AA, Allen AE, Palsson BO, Zengler K. Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom. Plos One. 11: e0155038. PMID 27152931 DOI: 10.1371/Journal.Pone.0155038  0.391
2016 Hopkinson BM, Dupont CL, Matsuda Y. The physiology and genetics of CO2 concentrating mechanisms in model diatoms. Current Opinion in Plant Biology. 31: 51-57. PMID 27055267 DOI: 10.1016/J.Pbi.2016.03.013  0.358
2016 Kent AG, Dupont CL, Yooseph S, Martiny AC. Global biogeography of Prochlorococcus genome diversity in the surface ocean. The Isme Journal. PMID 26836261 DOI: 10.1038/Ismej.2015.265  0.437
2016 Hogle SL, Cameron Thrash J, Dupont CL, Barbeau KA. Trace metal acquisition by marine heterotrophic bacterioplankton with contrasting trophic strategies. Applied and Environmental Microbiology. PMID 26729720 DOI: 10.1128/Aem.03128-15  0.37
2016 Robbins LJ, Lalonde SV, Planavsky NJ, Partin CA, Reinhard CT, Kendall B, Scott C, Hardisty DS, Gill BC, Alessi DS, Dupont CL, Saito MA, Crowe SA, Poulton SW, Bekker A, et al. Trace elements at the intersection of marine biological and geochemical evolution Earth-Science Reviews. 163: 323-348. DOI: 10.1016/J.Earscirev.2016.10.013  0.336
2016 Llorens-Marès T, Triadó-Margarit X, Borrego CM, Dupont CL, Casamayor EO. High Bacterial Diversity and Phylogenetic Novelty in Dark Euxinic Freshwaters Analyzed by 16S Tag Community Profiling Microbial Ecology. 71: 566-574. DOI: 10.1007/S00248-015-0696-2  0.393
2016 Glibert PM, Wilkerson FP, Dugdale RC, Raven JA, Dupont CL, Leavitt PR, Parker AE, Burkholder JM, Kana TM. Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen-enriched conditions Limnology and Oceanography. 61: 165-197. DOI: 10.1002/Lno.10203  0.339
2015 Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza JC, Sullivan MB, Cornejo-Castillo FM, Sánchez P, Acinas SG, Dupont CL, Béjà O. Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environmental Microbiology. PMID 26310718 DOI: 10.1111/1462-2920.13036  0.378
2015 Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, ... ... Dupont CL, et al. Designer diatom episomes delivered by bacterial conjugation. Nature Communications. 6: 6925. PMID 25897682 DOI: 10.1038/Ncomms7925  0.376
2015 Santoro AE, Dupont CL, Richter RA, Craig MT, Carini P, McIlvin MR, Yang Y, Orsi WD, Moran DM, Saito MA. Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean. Proceedings of the National Academy of Sciences of the United States of America. 112: 1173-8. PMID 25587132 DOI: 10.1073/Pnas.1416223112  0.419
2015 Llorens-Marès T, Yooseph S, Goll J, Hoffman J, Vila-Costa M, Borrego CM, Dupont CL, Casamayor EO. Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics. The Isme Journal. 9: 1648-61. PMID 25575307 DOI: 10.1038/Ismej.2014.254  0.41
2015 Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE. Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. The Isme Journal. 9: 1076-92. PMID 25333462 DOI: 10.1038/Ismej.2014.198  0.645
2015 Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL. Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis. Plant Biotechnology Journal. 13: 460-70. PMID 25302562 DOI: 10.1111/Pbi.12254  0.404
2014 Larsson J, Celepli N, Ininbergs K, Dupont CL, Yooseph S, Bergman B, Ekman M. Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea. The Isme Journal. 8: 1892-903. PMID 24621524 DOI: 10.1038/Ismej.2014.35  0.398
2014 Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, et al. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. Plos One. 9: e89549. PMID 24586863 DOI: 10.1371/Journal.Pone.0089549  0.394
2013 Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA, Smith HO, Venter JC, et al. Assembly of eukaryotic algal chromosomes in yeast. Journal of Biological Engineering. 7: 30. PMID 24325901 DOI: 10.1186/1754-1611-7-30  0.309
2013 Tetu SG, Johnson DA, Varkey D, Phillippy K, Stuart RK, Dupont CL, Hassan KA, Palenik B, Paulsen IT. Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species. Frontiers in Microbiology. 4: 232. PMID 23966990 DOI: 10.3389/Fmicb.2013.00232  0.709
2013 McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, et al. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proceedings of the National Academy of Sciences of the United States of America. 110: E2390-9. PMID 23754396 DOI: 10.1073/Pnas.1219809110  0.387
2013 Robbins LJ, Lalonde SV, Saito MA, Planavsky NJ, Mloszewska AM, Pecoits E, Scott C, Dupont CL, Kappler A, Konhauser KO. Authigenic iron oxide proxies for marine zinc over geological time and implications for eukaryotic metallome evolution. Geobiology. 11: 295-306. PMID 23601652 DOI: 10.1111/Gbi.12036  0.348
2013 Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE. Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. The New Phytologist. 198: 398-407. PMID 23488966 DOI: 10.1111/Nph.12160  0.351
2013 Rusch DB, Lombardo MJ, Yee-Greenbaum J, Novotny M, Brinkac LM, Lasken RS, Dupont CL. Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa. Genome Announcements. 1. PMID 23405308 DOI: 10.1128/Genomea.00030-12  0.359
2012 Tagwerker C, Dupont CL, Karas BJ, Ma L, Chuang RY, Benders GA, Ramon A, Novotny M, Montague MG, Venepally P, Brami D, Schwartz A, Andrews-Pfannkoch C, Gibson DG, Glass JI, et al. Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast. Nucleic Acids Research. 40: 10375-83. PMID 22941652 DOI: 10.1093/Nar/Gks823  0.395
2012 Dupont CL, Johnson DA, Phillippy K, Paulsen IT, Brahamsha B, Palenik B. Genetic identification of a high-affinity Ni transporter and the transcriptional response to Ni deprivation in Synechococcus sp. strain WH8102. Applied and Environmental Microbiology. 78: 7822-32. PMID 22904052 DOI: 10.1128/Aem.01739-12  0.631
2012 Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, DuPont CL, McMahon KD, Camacho A, Rodriguez-Valera F. Metagenomes of Mediterranean coastal lagoons. Scientific Reports. 2: 490. PMID 22778901 DOI: 10.1038/Srep00490  0.392
2012 Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA. Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein. Proceedings of the National Academy of Sciences of the United States of America. 109: E1762-71. PMID 22652568 DOI: 10.1073/Pnas.1201731109  0.401
2012 Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. The Isme Journal. 6: 1186-99. PMID 22170421 DOI: 10.1038/Ismej.2011.189  0.416
2011 Dupont CL, Grass G, Rensing C. Copper toxicity and the origin of bacterial resistance--new insights and applications. Metallomics : Integrated Biometal Science. 3: 1109-18. PMID 21984219 DOI: 10.1039/C1Mt00107H  0.31
2011 Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature Biotechnology. 29: 915-21. PMID 21926975 DOI: 10.1038/Nbt.1966  0.356
2011 Worden AZ, Dupont C, Allen AE. Genomes of uncultured eukaryotes: sorting FACS from fiction. Genome Biology. 12: 117. PMID 21722350 DOI: 10.1186/Gb-2011-12-6-117  0.37
2011 Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature. 473: 203-7. PMID 21562560 DOI: 10.1038/Nature10074  0.406
2011 Gilbert JA, Dupont CL. Microbial metagenomics: beyond the genome. Annual Review of Marine Science. 3: 347-71. PMID 21329209 DOI: 10.1146/Annurev-Marine-120709-142811  0.386
2011 Hopkinson BM, Dupont CL, Allen AE, Morel FM. Efficiency of the CO2-concentrating mechanism of diatoms. Proceedings of the National Academy of Sciences of the United States of America. 108: 3830-7. PMID 21321195 DOI: 10.1073/Pnas.1018062108  0.606
2011 Lucas AJ, Dupont CL, Tai V, Largier JL, Palenik B, Franks PJS. The green ribbon: Multiscale physical control of phytoplankton productivity and community structure over a narrow continental shelf Limnology and Oceanography. 56: 611-626. DOI: 10.4319/Lo.2011.56.2.0611  0.7
2011 Lucas AJ, Franks PJS, Dupont CL. Horizontal internal-tide fluxes support elevated phytoplankton productivity over the inner continental shelf Limnology and Oceanography: Fluids and Environments. 1: 56-74. DOI: 10.1215/21573698-1258185  0.334
2010 Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, et al. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 468: 60-6. PMID 21048761 DOI: 10.1038/Nature09530  0.413
2010 Rusch DB, Martiny AC, Dupont CL, Halpern AL, Venter JC. Characterization of Prochlorococcus clades from iron-depleted oceanic regions. Proceedings of the National Academy of Sciences of the United States of America. 107: 16184-9. PMID 20733077 DOI: 10.1073/Pnas.1009513107  0.37
2010 Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, et al. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America. 107: 14679-84. PMID 20668244 DOI: 10.1073/Pnas.1001665107  0.472
2010 Dupont CL, Butcher A, Valas RE, Bourne PE, Caetano-Anollés G. History of biological metal utilization inferred through phylogenomic analysis of protein structures. Proceedings of the National Academy of Sciences of the United States of America. 107: 10567-72. PMID 20498051 DOI: 10.1073/Pnas.0912491107  0.35
2010 Dupont CL, Caetano-Anollés G. Reply to Mulkidjanian and Galperin: Zn may have constrained evolution during the Proterozoic but not the Archean Proceedings of the National Academy of Sciences of the United States of America. 107: E138. DOI: 10.1073/Pnas.1009565107  0.325
2010 Dupont CL, Buck KN, Palenik B, Barbeau K. Nickel utilization in phytoplankton assemblages from contrasting oceanic regimes Deep-Sea Research Part I: Oceanographic Research Papers. 57: 553-566. DOI: 10.1016/J.Dsr.2009.12.014  0.62
2009 Stuart RK, Dupont CL, Johnson DA, Paulsen IT, Palenik B. Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains. Applied and Environmental Microbiology. 75: 5047-57. PMID 19502430 DOI: 10.1128/Aem.00271-09  0.701
2009 Todd JD, Curson AR, Dupont CL, Nicholson P, Johnston AW. The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethyl sulfide, is widespread in ocean metagenomes and marine bacteria and also occurs in some Ascomycete fungi. Environmental Microbiology. 11: 1376-85. PMID 19220400 DOI: 10.1111/J.1462-2920.2009.01864.X  0.389
2008 Dupont CL, Neupane K, Shearer J, Palenik B. Diversity, function and evolution of genes coding for putative Ni-containing superoxide dismutases. Environmental Microbiology. 10: 1831-43. PMID 18412551 DOI: 10.1111/J.1462-2920.2008.01604.X  0.644
2008 Dupont CL, Barbeau K, Palenik B. Ni uptake and limitation in marine Synechococcus strains. Applied and Environmental Microbiology. 74: 23-31. PMID 17951444 DOI: 10.1128/Aem.01007-07  0.635
2007 Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7705-10. PMID 17460045 DOI: 10.1073/Pnas.0611046104  0.714
2006 Dupont CL, Yang S, Palenik B, Bourne PE. Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry. Proceedings of the National Academy of Sciences of the United States of America. 103: 17822-7. PMID 17098870 DOI: 10.1073/Pnas.0605798103  0.623
2006 Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ, Durkin AS, Daugherty SC, Sullivan SA, Khouri H, Mohamoud Y, et al. Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences of the United States of America. 103: 13555-9. PMID 16938853 DOI: 10.1073/Pnas.0602963103  0.676
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