Vineeth Surendranath - Publications

MPI-CBG, Dresden, Dresden, Sachsen, Germany 
Evolution, Second Generation Sequencing, Bioinformatics

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. Elife. 4. PMID 25838129 DOI: 10.7554/eLife.05003  0.64
2014 Wagner I, Volkmer M, Sharan M, Villaveces JM, Oswald F, Surendranath V, Habermann BH. morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. Bmc Bioinformatics. 15: 263. PMID 25096057 DOI: 10.1186/1471-2105-15-263  0.64
2013 Karimova M, Abi-Ghanem J, Berger N, Surendranath V, Pisabarro MT, Buchholz F. Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system. Nucleic Acids Research. 41: e37. PMID 23143104 DOI: 10.1093/nar/gks1037  0.64
2013 Surendranath V, Theis M, Habermann BH, Buchholz F. Designing efficient and specific endoribonuclease-prepared siRNAs. Methods in Molecular Biology (Clifton, N.J.). 942: 193-204. PMID 23027053 DOI: 10.1007/978-1-62703-119-6_11  0.64
2012 Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F. Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nature Methods. 9: 360-2. PMID 22327834 DOI: 10.1038/nmeth.1894  0.64
2011 Lipinski KA, Puchta O, Surendranath V, Kudla M, Golik P. Revisiting the yeast PPR proteins--application of an Iterative Hidden Markov Model algorithm reveals new members of the rapidly evolving family. Molecular Biology and Evolution. 28: 2935-48. PMID 21546354 DOI: 10.1093/molbev/msr120  0.64
2011 Bradshaw CR, Surendranath V, Henschel R, Mueller MS, Habermann BH. HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition. Plos One. 6: e17568. PMID 21423752 DOI: 10.1371/journal.pone.0017568  0.64
2010 Surendranath V, Chusainow J, Hauber J, Buchholz F, Habermann BH. SeLOX--a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems. Nucleic Acids Research. 38: W293-8. PMID 20529878 DOI: 10.1093/nar/gkq523  0.64
2008 Junqueira M, Spirin V, Santana Balbuena T, Waridel P, Surendranath V, Kryukov G, Adzhubei I, Thomas H, Sunyaev S, Shevchenko A. Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification. Journal of Proteome Research. 7: 3382-95. PMID 18558732 DOI: 10.1021/pr800140v  0.64
2007 Kittler R, Pelletier L, Heninger AK, Slabicki M, Theis M, Miroslaw L, Poser I, Lawo S, Grabner H, Kozak K, Wagner J, Surendranath V, Richter C, Bowen W, Jackson AL, et al. Genome-scale RNAi profiling of cell division in human tissue culture cells. Nature Cell Biology. 9: 1401-12. PMID 17994010 DOI: 10.1038/ncb1659  0.64
2007 Waridel P, Frank A, Thomas H, Surendranath V, Sunyaev S, Pevzner P, Shevchenko A. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. Proteomics. 7: 2318-29. PMID 17623296 DOI: 10.1002/pmic.200700003  0.64
2007 Schwudke D, Hannich JT, Surendranath V, Grimard V, Moehring T, Burton L, Kurzchalia T, Shevchenko A. Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra. Analytical Chemistry. 79: 4083-93. PMID 17474710 DOI: 10.1021/ac062455y  0.64
2007 Kittler R, Surendranath V, Heninger AK, Slabicki M, Theis M, Putz G, Franke K, Caldarelli A, Grabner H, Kozak K, Wagner J, Rees E, Korn B, Frenzel C, Sachse C, et al. Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies. Nature Methods. 4: 337-44. PMID 17351622 DOI: 10.1038/nmeth1025  0.64
2006 Bradshaw CR, Surendranath V, Habermann B. ProFAT: a web-based tool for the functional annotation of protein sequences. Bmc Bioinformatics. 7: 466. PMID 17059594 DOI: 10.1186/1471-2105-7-466  0.64
2006 Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A. Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. Journal of Proteome Research. 5: 2448-56. PMID 16944958 DOI: 10.1021/pr060200v  0.64
2004 Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A. BioBuilder as a database development and functional annotation platform for proteins. Bmc Bioinformatics. 5: 43. PMID 15099404 DOI: 10.1186/1471-2105-5-43  0.64
2004 Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Research. 32: D497-501. PMID 14681466 DOI: 10.1093/nar/gkh070  0.64
2003 Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research. 13: 2363-71. PMID 14525934 DOI: 10.1101/gr.1680803  0.64
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