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Carol A. Rohl - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2010 Castle JC, Biery M, Bouzek H, Xie T, Chen R, Misura K, Jackson S, Armour CD, Johnson JM, Rohl CA, Raymond CK. DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing. Bmc Genomics. 11: 244. PMID 20398377 DOI: 10.1186/1471-2164-11-244  0.7
2009 Bankhead A, Sach I, Ni C, LeMeur N, Kruger M, Ferrer M, Gentleman R, Rohl C. Knowledge based identification of essential signaling from genome-scale siRNA experiments Bmc Systems Biology. 3. PMID 19653913 DOI: 10.1186/1752-0509-3-80  0.355
2009 Khatib F, Rohl CA, Karplus K. Pokefind: a novel topological filter for use with protein structure prediction. Bioinformatics (Oxford, England). 25: i281-8. PMID 19478000 DOI: 10.1093/Bioinformatics/Btp198  0.768
2006 Rohl C, Price Y, Fischer TB, Paczkowski M, Zettel MF, Tsai J. Cataloging the relationships between proteins: a review of interaction databases. Molecular Biotechnology. 34: 69-93. PMID 16943573 DOI: 10.1385/Mb:34:1:69  0.532
2006 Khatib F, Weirauch MT, Rohl CA. Rapid knot detection and application to protein structure prediction. Bioinformatics (Oxford, England). 22: e252-9. PMID 16873480 DOI: 10.1093/Bioinformatics/Btl236  0.81
2006 Misura KM, Chivian D, Rohl CA, Kim DE, Baker D. Physically realistic homology models built with ROSETTA can be more accurate than their templates. Proceedings of the National Academy of Sciences of the United States of America. 103: 5361-6. PMID 16567638 DOI: 10.1073/Pnas.0509355103  0.786
2005 Chivian D, Kim DE, Malmström L, Schonbrun J, Rohl CA, Baker D. Prediction of CASP6 structures using automated Robetta protocols. Proteins. 61: 157-66. PMID 16187358 DOI: 10.1002/Prot.20733  0.803
2005 Rohl CA. Protein structure estimation from minimal restraints using Rosetta. Methods in Enzymology. 394: 244-60. PMID 15808223 DOI: 10.1016/S0076-6879(05)94009-3  0.613
2004 Rohl CA, Strauss CE, Chivian D, Baker D. Modeling structurally variable regions in homologous proteins with rosetta. Proteins. 55: 656-77. PMID 15103629 DOI: 10.1002/Prot.10629  0.829
2004 Rohl CA, Strauss CE, Misura KM, Baker D. Protein structure prediction using Rosetta. Methods in Enzymology. 383: 66-93. PMID 15063647 DOI: 10.1016/S0076-6879(04)83004-0  0.836
2003 Chivian D, Kim DE, Malmström L, Bradley P, Robertson T, Murphy P, Strauss CE, Bonneau R, Rohl CA, Baker D. Automated prediction of CASP-5 structures using the Robetta server. Proteins. 53: 524-33. PMID 14579342 DOI: 10.1002/Prot.10529  0.808
2003 Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, Strauss CE, Baker D. Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. Proteins. 53: 457-68. PMID 14579334 DOI: 10.1002/Prot.10552  0.731
2003 Tsai J, Bonneau R, Morozov AV, Kuhlman B, Rohl CA, Baker D. An improved protein decoy set for testing energy functions for protein structure prediction. Proteins. 53: 76-87. PMID 12945051 DOI: 10.1002/Prot.10454  0.807
2003 Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. Journal of Molecular Biology. 331: 281-99. PMID 12875852 DOI: 10.1016/S0022-2836(03)00670-3  0.814
2002 Chin DH, Woody RW, Rohl CA, Baldwin RL. Circular dichroism spectra of short, fixed-nucleus alanine helices. Proceedings of the National Academy of Sciences of the United States of America. 99: 15416-21. PMID 12427967 DOI: 10.1073/Pnas.232591399  0.319
2002 Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. De novo prediction of three-dimensional structures for major protein families. Journal of Molecular Biology. 322: 65-78. PMID 12215415 DOI: 10.1016/S0022-2836(02)00698-8  0.836
2002 Rohl CA, Baker D. De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. Journal of the American Chemical Society. 124: 2723-9. PMID 11890823 DOI: 10.1021/Ja016880E  0.667
2002 Wedemeyer WJ, Rohl CA, Scherag HA. Exact solutions for chemical bond orientations from residual dipolar couplings. Journal of Biomolecular Nmr. 22: 137-51. PMID 11883775 DOI: 10.1023/A:1014206617752  0.697
2001 Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Rosetta in CASP4: progress in ab initio protein structure prediction. Proteins. 119-26. PMID 11835488 DOI: 10.1002/Prot.1170  0.838
1999 Rohl CA, Fiori W, Baldwin RL. Alanine is helix-stabilizing in both template-nucleated and standard peptide helices. Proceedings of the National Academy of Sciences of the United States of America. 96: 3682-7. PMID 10097097 DOI: 10.1073/Pnas.96.7.3682  0.34
1999 Rohl CA, Boeckman FA, Baker C, Scheuer T, Catterall WA, Klevit RE. Solution structure of the sodium channel inactivation gate. Biochemistry. 38: 855-61. PMID 9893979 DOI: 10.1021/Bi9823380  0.371
1997 Rohl CA, Baldwin RL. Comparison of NH exchange and circular dichroism as techniques for measuring the parameters of the helix-coil transition in peptides. Biochemistry. 36: 8435-42. PMID 9214287 DOI: 10.1021/Bi9706677  0.358
1996 Rohl CA, Doig AJ. Models for the 3(10)-helix/coil, pi-helix/coil, and alpha-helix/3(10)-helix/coil transitions in isolated peptides. Protein Science : a Publication of the Protein Society. 5: 1687-96. PMID 8844857 DOI: 10.1002/Pro.5560050822  0.342
1996 Loh SN, Rohl CA, Kiefhaber T, Baldwin RL. A general two-process model describes the hydrogen exchange behavior of RNase A in unfolding conditions. Proceedings of the National Academy of Sciences of the United States of America. 93: 1982-7. PMID 8700871 DOI: 10.1073/Pnas.93.5.1982  0.382
1995 Stapley BJ, Rohl CA, Doig AJ. Addition of side chain interactions to modified Lifson-Roig helix-coil theory: application to energetics of phenylalanine-methionine interactions. Protein Science : a Publication of the Protein Society. 4: 2383-91. PMID 8563636 DOI: 10.1002/Pro.5560041117  0.348
1994 Rohl CA, Baldwin RL. Exchange kinetics of individual amide protons in 15N-labeled helical peptides measured by isotope-edited NMR. Biochemistry. 33: 7760-7. PMID 8011641 DOI: 10.1021/Bi00191A003  0.302
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