Justin Fay - Publications

Genetics/Center for Genome Sciences Washington University, Saint Louis, St. Louis, MO 
Population genetics, Quantitative genetics

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Fasanello VJ, Liu P, Botero CA, Fay JC. High-throughput analysis of adaptation using barcoded strains of . Peerj. 8: e10118. PMID 33088623 DOI: 10.7717/peerj.10118  0.44
2019 Fay JC, Liu P, Ong GT, Dunham MJ, Cromie GA, Jeffery EW, Ludlow CL, Dudley AM. A polyploid admixed origin of beer yeasts derived from European and Asian wine populations. Plos Biology. 17: e3000147. PMID 30835725 DOI: 10.1371/Journal.Pbio.3000147  0.44
2018 Riles L, Fay JC. Genetic Basis of Variation in Heat and Ethanol Tolerance in . G3 (Bethesda, Md.). PMID 30459179 DOI: 10.1534/g3.118.200566  0.64
2017 Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, ... ... Fay JC, et al. Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnology For Biofuels. 10: 78. PMID 28360936 DOI: 10.1186/S13068-017-0763-7  0.88
2016 Ludlow CL, Cromie GA, Garmendia-Torres C, Sirr A, Hays M, Field C, Jeffery EW, Fay JC, Dudley AM. Independent Origins of Yeast Associated with Coffee and Cacao Fermentation. Current Biology : Cb. 26: 965-971. PMID 27020745 DOI: 10.1016/j.cub.2016.02.012  0.68
2016 Dashko S, Liu P, Volk H, Butinar L, Piškur J, Fay JC. Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations. Frontiers in Microbiology. 7: 215. PMID 26941733 DOI: 10.3389/fmicb.2016.00215  0.44
2015 Williams KM, Liu P, Fay JC. Evolution of ecological dominance of yeast species in high-sugar environments. Evolution; International Journal of Organic Evolution. PMID 26087012 DOI: 10.1111/Evo.12707  0.68
2015 Nikolskiy I, Conrad DF, Chun S, Fay JC, Cheverud JM, Lawson HA. Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides. Bmc Genomics. 16: 415. PMID 26016481 DOI: 10.1186/S12864-015-1592-3  0.68
2014 Swain Lenz D, Riles L, Fay JC. Heterochronic meiotic misexpression in an interspecific yeast hybrid. Molecular Biology and Evolution. 31: 1333-42. PMID 24608322 DOI: 10.1093/molbev/msu098  0.88
2013 Chun S, Plunkett J, Teramo K, Muglia LJ, Fay JC. Fine-mapping an association of FSHR with preterm birth in a Finnish population. Plos One. 8: e78032. PMID 24205076 DOI: 10.1371/Journal.Pone.0078032  0.88
2013 Cromie GA, Hyma KE, Ludlow CL, Garmendia-Torres C, Gilbert TL, May P, Huang AA, Dudley AM, Fay JC. Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq. G3 (Bethesda, Md.). 3: 2163-71. PMID 24122055 DOI: 10.1534/G3.113.007492  0.88
2013 Xiong Y, Brunson M, Huh J, Huang A, Coster A, Wendt K, Fay J, Qin D. The role of surface chemistry on the toxicity of ag nanoparticles. Small (Weinheim An Der Bergstrasse, Germany). 9: 2628-38. PMID 23468386 DOI: 10.1002/Smll.201202476  0.68
2013 Hyma KE, Fay JC. Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards. Molecular Ecology. 22: 2917-30. PMID 23286354 DOI: 10.1111/Mec.12155  0.88
2012 Kim HS, Huh J, Riles L, Reyes A, Fay JC. A noncomplementation screen for quantitative trait alleles in saccharomyces cerevisiae. G3 (Bethesda, Md.). 2: 753-60. PMID 22870398 DOI: 10.1534/g3.112.002550  0.64
2011 Hyma KE, Saerens SM, Verstrepen KJ, Fay JC. Divergence in wine characteristics produced by wild and domesticated strains of Saccharomyces cerevisiae. Fems Yeast Research. 11: 540-51. PMID 22093681 DOI: 10.1111/J.1567-1364.2011.00746.X  0.88
2011 Chun S, Fay JC. Evidence for hitchhiking of deleterious mutations within the human genome. Plos Genetics. 7: e1002240. PMID 21901107 DOI: 10.1371/Journal.Pgen.1002240  0.88
2011 Plunkett J, Doniger S, Orabona G, Morgan T, Haataja R, Hallman M, Puttonen H, Menon R, Kuczynski E, Norwitz E, Snegovskikh V, Palotie A, Peltonen L, Fellman V, DeFranco EA, ... ... Fay J, et al. An evolutionary genomic approach to identify genes involved in human birth timing. Plos Genetics. 7: e1001365. PMID 21533219 DOI: 10.1371/Journal.Pgen.1001365  0.88
2010 Plunkett J, Doniger S, Morgan T, Haataja R, Hallman M, Puttonen H, Menon R, Kuczynski E, Norwitz E, Snegovskikh V, Palotie A, Peltonen L, Fellman V, DeFranco EA, Chaudhari BP, ... ... Fay JC, et al. Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth. Bmc Medical Genomics. 3: 62. PMID 21184677 DOI: 10.1186/1755-8794-3-62  0.88
2010 Venkataram S, Fay JC. Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? Genome Biology and Evolution. 2: 851-8. PMID 21068212 DOI: 10.1093/gbe/evq066  1
2010 Ratajczak CK, Fay JC, Muglia LJ. Preventing preterm birth: the past limitations and new potential of animal models. Disease Models & Mechanisms. 3: 407-14. PMID 20610693 DOI: 10.1242/Dmm.001701  0.68
2010 Will JL, Kim HS, Clarke J, Painter JC, Fay JC, Gasch AP. Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. Plos Genetics. 6: e1000893. PMID 20369021 DOI: 10.1371/Journal.Pgen.1000893  0.68
2009 Chun S, Fay JC. Identification of deleterious mutations within three human genomes. Genome Research. 19: 1553-61. PMID 19602639 DOI: 10.1101/Gr.092619.109  0.68
2009 Kim HS, Huh J, Fay JC. Dissecting the pleiotropic consequences of a quantitative trait nucleotide. Fems Yeast Research. 9: 713-22. PMID 19456872 DOI: 10.1111/j.1567-1364.2009.00516.x  0.32
2009 Druley TE, Vallania FL, Wegner DJ, Varley KE, Knowles OL, Bonds JA, Robison SW, Doniger SW, Hamvas A, Cole FS, Fay JC, Mitra RD. Quantification of rare allelic variants from pooled genomic DNA. Nature Methods. 6: 263-5. PMID 19252504 DOI: 10.1038/Nmeth.1307  0.68
2008 Doniger SW, Kim HS, Swain D, Corcuera D, Williams M, Yang SP, Fay JC. A catalog of neutral and deleterious polymorphism in yeast. Plos Genetics. 4: e1000183. PMID 18769710 DOI: 10.1371/Journal.Pgen.1000183  0.68
2008 Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M, MacArthur S, Fay JC, Eisen MB, Pirrotta V, Biggin MD, Dorsett D. Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome. Chromosoma. 117: 89-102. PMID 17965872 DOI: 10.1007/S00412-007-0129-1  0.68
2007 Doniger SW, Fay JC. Frequent gain and loss of functional transcription factor binding sites. Plos Computational Biology. 3: e99. PMID 17530920 DOI: 10.1371/Journal.Pcbi.0030099  0.68
2006 Gertz J, Fay JC, Cohen BA. Phylogeny based discovery of regulatory elements. Bmc Bioinformatics. 7: 266. PMID 16716228 DOI: 10.1186/1471-2105-7-266  0.68
2005 Fay JC, Benavides JA. Evidence for domesticated and wild populations of Saccharomyces cerevisiae. Plos Genetics. 1: 66-71. PMID 16103919 DOI: 10.1371/journal.pgen.0010005  0.88
2005 Fay JC, Benavides JA. Hypervariable noncoding sequences in Saccharomyces cerevisiae. Genetics. 170: 1575-87. PMID 15956668 DOI: 10.1534/genetics.105.042283  0.68
2005 Doniger SW, Huh J, Fay JC. Identification of functional transcription factor binding sites using closely related Saccharomyces species. Genome Research. 15: 701-9. PMID 15837806 DOI: 10.1101/Gr.3578205  0.68
2004 DuMont VB, Fay JC, Calabrese PP, Aquadro CF. DNA variability and divergence at the notch locus in Drosophila melanogaster and D. simulans: a case of accelerated synonymous site divergence. Genetics. 167: 171-85. PMID 15166145 DOI: 10.1534/Genetics.167.1.171  0.68
2004 Fay JC, McCullough HL, Sniegowski PD, Eisen MB. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biology. 5: R26. PMID 15059259 DOI: 10.1186/Gb-2004-5-4-R26  0.68
2003 Fay JC, Wu CI. Sequence divergence, functional constraint, and selection in protein evolution. Annual Review of Genomics and Human Genetics. 4: 213-35. PMID 14527302 DOI: 10.1146/annurev.genom.4.020303.162528  0.68
2002 Fay JC, Wyckoff GJ, Wu CI. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature. 415: 1024-6. PMID 11875569 DOI: 10.1038/4151024a  0.68
2001 Fay JC, Wu CI. The neutral theory in the genomic era Current Opinion in Genetics and Development. 11: 642-646. PMID 11682307 DOI: 10.1016/S0959-437X(00)00247-1  0.68
1999 Fay JC, Wu CI. A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation [1] Molecular Biology and Evolution. 16: 1003-1005. PMID 10406117 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A026175  0.68
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